Gene detail

Detailed information of PFX24202.1 in Stylophora pistillata

Genomic Location: Spis.scaffold183:60227...65017
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis11198_mrna

AAAATCAATATGGCGAACGACTGGTTActttgatgatgatgttgaatAGTCAagaatttttctgtttaaaatatGATTAGAAAGGGATCGATGAGTCCTAAAAACATTTTGATGCTGAGTTTCGTGCTCTCTCTTCTTGGATTTTTATGGTTTACAAATCAATGCCTTGAAGAATCAGTTAGCTCAAGTGATATGGTAAGGATGAGCCACATGCttaaaaaactggaaaagaGAGAGCTCTcattaaaagaaagagaagaagagatCACGAAGAAACTAAAGATCCTAAGAATAAGCAAAATTGACAGTCTGTATCAAGAAGGCTTTGATGACATGCCAACTATTTATTTTATCACCCCTACTTATAAAAGACTTACACAAAAGGCTGACCTAACAAGACTGTCTCACACACTGTTACATGTCCCTAAACTTCACTGGATACTAGTTGAAGATTCTGACAAGAAAACAGATCTTGTTTCACGTTTCTTGAAATCTTGTGGTGTTAGTTATACACATCTTGCAGTAAGAACTCCAAAGCAGCTCATAACTAAAGAAGGAGACCCAAGGTGGTTAAAAGCCAGAGGTGTAGAACAGAGGAATTTAGGCCTTAGATGGATAAGGCAAAACTTTAAGGATGATATGAAAGGTGTTCTATATTTTGGAGATGATGACAACACCTATGATTTGAGAATATTTGAACAGATGCGATacacaaagaaaatatcagtttGGCCCGTAGGCCTGGTGGGTGGGTTAAAGTGGGAAGGACCAATCTGCAAAGATGGATCTGTTGTCAAATTTTACACAATGTGGGAACCAAGACGCCCAATGCCTGTTGACATGGCAGGGTTTGCTATTAACGTCCAACTGATTATAGACAATCCTGAAGTGGAAATGGACCCAATGGCCAAGAGGGGCTATTTGGAGTCTTCTGTTGTTGGTAGACTGGCAAAGAGGGAGGAGTTTGAGCCATTGGCTAATAATTGTAAACAGaTTCTCGTGTGGCACACGCAAACAGCCGagccaaaaatgaaacaagaagataaattgaaaagagTGGGACGTGAGTCTGATCCATCCATGGAAGTCTAAACATTGGTTACCCGCTAACTATGCTGGTTTTGTATCAAAGTTTTATTTAACTGCTTGTGGCAAATTAATGACCGGCGATATCTTTGTACTCCAAACTGACAATTTAACGAGTTCTTAgccaaattttaaactgaaatgaCAAGTTAagtattttgaattaaaatgagGCTATTTTGGAGGAAGATTATTAACAAATACATTTCACACACTAGTGGCGGATAAGTTGgagtttggttttgtttgagGGCGCGTTTCAAGTGTGAGTCAAGTTTCCGACTATGAGCAAGTGGCTGCACCTTCCGGTAATGACTATGGAGAAGGTCTCTTTTCCGCTCTAAGCGTTTGTGTTACTTTTCGTCGACGTATGCATTAGATCAGTGGTGCTGAATTGTGCTTTGAGTAACTAATACGGATATGTGCGTCTCTCATTTTGAAAACGACCTGGTGAAGCGCGAGGATTTTCGTGTAGGGCACGAGGCCACGCGACATTTCTTTATACTGTACAATCCATGCGCGGTTTGCCTACTTCAGTAACTCGGTGTTTTCATTACAAATAGCGATATACTTTTGCCCTGGATGAAGACTTTGGTCTCGCCTCTTCAACTGTTATAGTCGTAGAAGTTAAACGACATGAGTTTTGGAGCCTGTGCAGGCGCAATTCAGTATATGCTGGAAGGAGCTGAGGAAGAGCGCACGAATCCAACATTGATGGAAATTAAGAACATGACctagaaatataaagaaattctTTTGTAGAGAGATAAGGTGTTAATGTGCTAGCATCctctcaaatttgaaaataacccTCAGCAAACTCCCAGGAGTGCGCAATATTTGAGTTCTCCTAATAATTCACTGTCAGGCAGACAGACTGGAATATCGATCTATTTTGGCACTGGGTTCTCAGGAAAAGCCGATAAGGAAATTACGGGGATTAAACTctcagatcttggaagtaaaaAGGTTCAGTGTACGTTGAAGTGAGGGCTCACTGGAAAGGATACTGAGGACCGTTTTCGAAGCGAAAACAGGAAAGGATTTAAAAAGAGTCTTTAGGTATtataacttgttttt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03360 all species →	Glyco_transf_43	Glycosyltransferase family 43	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005027 all species →	Family	Glycosyl transferase, family 43	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10896 all species →	GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015018 all species →	Molecular Function	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0050650 all species →	Biological Process	chondroitin sulfate proteoglycan biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10158	B3GAT3; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3	EC:2.4.1.135	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.