Gene detail

Detailed information of PFX24213.1 in Stylophora pistillata

Genomic Location: Spis.scaffold183:469537...477378
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ZRANB1

ATGCCAAAGAAAGAAGAAAGCCTAAAATGGGCGTGCAAGTATTGCACCTACTTTAATTGGCCTTGTTCTGTAAAATGTACTTTGTGCCATGCACCAAGACCGCCTCAGGTTATCACGCAAGAAGCAAGCAGAACAGCAAATGTATCAGAGGATATTTACGAGGCTGCTAGCAGCGATAGGATTATCTCAACTGACCCGCTTATTTGTTCGTCGAGCGACAATAAAAGCTTGTCACCGCGAGTCGCCGAACAGACAGAAGACAACTCGAAATGGACCTGTGCTTGTTGTACCTACGAAAACTGGCCTCGCTCTTTGCACTGCGTTATGTGCCGAGCTTCAAAACAACAGTCAAGCAAGAACGGAAGGCATACAGAGTGTGGAAATGGAAACAGGGATGCTTCCTCTCGAAGTGTGTCTCCTAAATCACCTCGTTCTGTCAGCGGCAACGGTAGGTTAGACTCCAAAACAATCAACAATGACAAAAACCGCGCGCTTCTGAAAAATCACAAGTGGACTTGTCCGCAATGTACGTACGAAAACTGGCCAAAAACTACTAAGTGCGTCCTTTGCAAGTGTTTGAAGCCGGCCAAAATAAAACAAGAGGAACTCGCGAAGAACACTTCGCAAGACAATAACACAAAAAGACCATCCACGTCAAAGAGAAGATCGCCTTCTTCATCTGTCAGTGAAGCCACTTTAGAAATCCAGCCGAGTAGTCAGATTGGCGAAACGATAATTTATGACATTCCAGCCTCAGACGATGTCAATGATAATGAAGAAGTTCTTCAAATCCGAAATTGTTTAAAAGACTCTGACTGGTTGTGGTTGAGTGCTTGTATAGGAGTAGTTGAAGGTGATACGGCTTCTGTGGAGAGCTATTTAAACTCTGGTAATGATCTTTCCAGGCAATTGACAAGAGAAGATTGTTTGGTGCTTAACAGACCTGGAGTGTTTGAAGTGGGGCACACATTAGTACATTTGGCATTTAAATTTAAAAGAGAAGAGCTTATGACAATTTTGCTTACTCCAGAAGTGACAAGCCATCATTTAAGACGTGTTCCTTGCATAGCATGCCCAGAACTTGCTGCAGACATCAGAAAACAGATGGGTCACACCATGAGGCAACGTAAAGGAGACTGGCGTTGTTACTTCTTTACGGACCAGGTCACATTTGTTCTCCCAGCAGAGATTCAAGACTTTCCAGGAAGAGCACAGAGGCAAGTGTTTGATGACATCCTAGATAGGGAAGTTCAAAGAGTTCTAGAGATGGAGTCCCCTGTTATCAACTGGAGTGAAGAGATAACTGAACAGTTAGGAAGCAGGATCTACCCCTTGTGGAATCGTTCTGCGGGTGACTGCCTTCTGGACTCGATTCTTCAATCTTCATATGGTGTCTTTGACAGAGATAATACTCTAAGACGAGCACTTTATGACAGCTTAACAGAGGGAGGCTCAAGGTTTTTTAATAGGTACAAGGAGTGGGAATCTATGCAAGCAGAAACTCTCCAATATTCTCTAGATGAAGATCAATGGGAGCAAGACTGGGCCTCCATTCTTAGTCTTGCTGGTCAGCCAGGAACTTCCTTAGAGCAAACACATGTATTTGCTCTGGCGCACATTCTCCGTCGACCAGTCATCATTTATGGTGTGAAATATGTCAAAAGTTTTAGAGGAGAAGTGCTTGGGCTTGCTAGATTTCAAGGAGTTTATCTACCTGTTTTATGGGAACAGACTTTCTGTTGGAAGAATCCATTAGTATTAGGCTATACAAGGGGACATTTCTCTGCTTTAGTTGCAATGGAAACTGATAACTCTAATGAACTTGGTGCAGGAGCCAATGTGGATAGTATAGACAGTGTTCATGTGACCTATTTACCACTGGTTGACTACGAAGGCAAATTGCTACCTGTTCACTTTTTGTCTGCAGAGGAGAGGGGCAGTGAAGAGCGCTTGCTGCATGAGTGGCTAGATTGTTGTGTGACAGAAGGTGGGGTCCTAGTGGCAAAGCAGAAGCTAACACCAAGACCTGCGCTTGTCAACCAACTAATTGATGATTGGTTGGACCGCTACAGGAAACTAAACAAACCCAAATGA

Transcript

rna-Spis11220_mrna

ATgccaaagaaagaagaaagccTAAAATGGGCGTGCAAGTATTGCACCTACTTTAATTGGCCTTGTTCTGTAAAATGTACTTTGTGCCATGCACCAAGACCGCCTCAGGTTATCACGCAAGAAGCAAGCAGAACAGCAAATGTATCAGAGGATATTTACGAGGCTGCTAGCAGCGATAGGATTATCTCAACTGACCCGCTTATTTGTTCGTCGAGCGACAATAAAAGCTTGTCACCGCGAGTCGCCGAACAGACAGAAGACAACTCGAAATGGACCTGTGCTTGTTGTACCTACGAAAACTGGCCTCGCTCTTTGCACTGCGTTATGTGCCGAGCTTCAAAACAACAGTCAAGCAAGAACGGAAGGCATACAGAGTGTGGAAATGGAAACAGGGATGCTTCCTCTCGAAGTGTGTCTCCTAAATCACCTCGTTCTGTCAGCGGCAACGGTAGGTTAGACtccaaaacaatcaacaatgaCAAAAACCGCGCGCTTCTGAAAAATCACAAGTGGACTTGTCCGCAATGTACGTACGAAAACTGGCCAAAAACTACTAAGTGCGTCCTTTGCAAGTGTTTGAAGCCggccaaaataaaacaagaggAACTCGCGAAGAACACTTCGCAAGACAATAACACAAAAAGACCATCCACGTCAAAGAGAAGATCGCCTTCTTCATCTGTCAGTGAAGCCACTTTAGAAATCCAGCCGAGTAGTCAGATTGGCGAAACGATAATTTATGACATTCCAGCCTCAGACGATGTCAATGATAATGAAGAAGTTCTTCAAATCCGAAATTGTTTAAAAGACTCTGACTGGTTGTGGTTGAGTGCTTGTATAGGAGTAGTTGAAGGTGATACGGCTTCTGTGGAGAGCTATTTAAACTCTGGTAATGATCTTTCCAGGCAATTGACAAGAGAAGATTGTTTGGTGCTTAACAGACCTGGAGTGTTTGAAGTGGGGCACACATTAGTACATTTggcatttaaatttaaaagagaaGAGCTTATGACAATTTTGCTTACTCCAGAAGTGACAAGCCATCATTTAAGACGTGTTCCTTGCATAGCATGCCCAGAACTTGCTGCAGACATCAGAAAACAGATGGGTCACACCATGAGGCAACGTAAAGGAGACTGGCGTTGTTACTTCTTTACGGACCAGGTCACATTTGTTCTCCCAGCAGagATTCAAGACTTTCCAGGAAGAGCACAGAGGCAAGTGTTTGATGACATCCTAGATAGGGAAGTTCAAAGAGTTCTAGAGATGGAGTCCCCTGTTATCAACTGGAGTGAAGAGATAACTGAACAGTTAGGAAGCAGGATCTACCCCTTGTGGAATCGTTCTGCGGGTGACTGCCTTCTGGACTCGATTCTTCAATCTTCATATGGTGTCTTTGACAGAGATAATACTCTAAGACGAGCACTTTATGACAGCTTAACAGAGGGAGGCTCAAGGTTTTTTAATAGGTACAAGGAGTGGGAATCTATGCAAGCAGAAACTCTCCAATATTCTCTAGATGAAGATCAATGGGAGCAAGACTGGGCCTCCATTCTTAGTCTTGCTGGTCAGCCAGGAACTTCCTTAGAGCAAACACATGTATTTGCTCTGGCGCACATTCTCCGTCGACCAGTCATCATTTATGGTGTGAAATATGTCAAAAGTTTTAGAGGAGAAGTGCTTGGGCTTGCTAGATTTCAAGGAGTTTATCTACCTGTTTTATGGGAACAGACTTTCTGTTGGAAGAATCCATTAGTATTAGGCTATACAAGGGGACATTTCTCTGCTTTAGTTGCAATGGAAACTGATAACTCTAATGAACTTGGTGCAGGAGCCAATGTGGATAGTATAGACAGTGTTCATGTGACCTATTTACCACTGGTTGACTACGAAGGCAAATTGCTACCTGTTCACTTTTTGTCTGCAGAGGAGAGGGGCAGTGAAGAGCGCTTGCTGCATGAGTGGCTAGATTGTTGTGTGACAGAAGGTGGGGTCCTAGTGGCAAAGCAGAAGCTAACACCAAGACCTGCGCTTGTCAACCAACTAATTGATGATTGGTTGGACCGCTACAGGAAACTAAACAAACCCAAATGA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|ZnF\|NZF · all ubiquitin genes in this species
Ubiquitin family	DUB\|OTU\|OTU · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02338 all species →	OTU	OTU-like cysteine protease	Family	Interproscan
PF18418 all species →	AnkUBD	Ankyrin ubiquitin-binding domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR003323 all species →	Domain	OTU domain	Interproscan
IPR049768 all species →	Domain	Ubiquitin thioesterase ZRANB1, ovarian tumor domain	Interproscan
IPR041294 all species →	Domain	Ankyrin ubiquitin-binding domain	Interproscan
IPR051346 all species →	Family	OTU Domain-Containing Deubiquitinase	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13367 all species →	UBIQUITIN THIOESTERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0070530 all species →	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0071947 all species →	Biological Process	protein deubiquitination involved in ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11862	ZRANB1, TRABID; ubiquitin thioesterase ZRANB1	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.