Gene detail

Detailed information of PFX24220.1 in Stylophora pistillata

Genomic Location: Spis.scaffold182:11651...35551
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

smarcal1

ATGTCAGCGGGAGGATTAACAGAGGAACAAAGGAGGAGAATTGAAGAAAATCGTCGAAAAGCTCTCGAGAAACGAGCGGCTCTCCAGGATCAACGACAGCAGCAAGCGCCATTAGTAAAAGACAAAGCTGATGGTAATCGTAATGTTACAAACCTAAGAGGCTCTAACGTAAATTCACAGAAAATTCCAGCAGGCTCCTTGGCCTCTACATCTAAAACCTTCAACTCAGCAGGAACGATAAATTCCTTTCAAAGATCGATCTCCAAATTTTATTGTCCTCAGACTCCTTCATCCACGAGAAATTTTAAAGACACTAGTCCATGCAAATCGTCTGGTGGAACAGCAACTACAACTAAATCAACTTCTTCAAGAACAAGTCCAAGAGCAGGAACATCAAAGCCAAATACTGGTAACGTTTCGAATTTTAAGGGGAATTCAGAGAAGCAAGTGAAGGGGAACTGTACACTGATCAGCAGACACCGATTTACCGTAGTGGTTCCTTATCAAGCACAGCTCATAGGAATTTTCAAGACTTTGCCAAGCAGAAATTATGATGCAAAGACAAGGCAATGGGACTTTTCTTTGACAGATTATGATAAGCTCATGCAAACGGTTCACTCCCTATCCCCTGATATTACAGTGGAAGGATTACCTAAAGCAGTGAGATCAACATTTCTTAAGACTACTCCAGGCACTCTGGAGGAAATGCCGACCAGTGATATCAATTTAAACTCTGTGGATCACAAGCTTGTTAAAGCACTGATGCCATTTCAATTAGAAGGAGTTAGTTTTGGAATACGCCATGATGGAAGAGTGTTGATTGCTGATGACATGGGACTGGGAAAGACAATCCAAGCCATCTGCGTAGCAAGCTATTATCGCGTTGAGTGGCCCCTACTGGTTATCACACCATCCTCTCTCAGAATAGCTTGGCGAGAGGCCTTTATCAAATGGCTCCCCTCTGTTGACCCAGAAGACATTAATGTAGTCCTTACTGGAAAGGACAATCCAACTGCTGGGCTTATCAATGTAATAAGCTATGATCTTATGTCTAAATGTGTAGAGGAGTTGAAGAAGAAACGGTTTAGAGTCATTATAGTGTGGAACCTCGATTTAACGAAGGGCCAAGGGACTGGGGAAATTGGCAGCCACTCGTGTGATCCTGTTATCTGGAACCCCAGCTCTCTCGAGGCCGTTAGAGCTGTACACCCAGATCTGTGCCGTCCAGCCATTGTTATTTCCCATGTTTCATCTGTTTGGAATCCGCTACTGTGCCGGCCAACAGAATCGGTTTGGTTGGGATTTTTCAGGCGCATCCAACATGCAGGAGCTTCAACTACTGTTGGAGGAAAAGATGATGATCAGAAGTATAAGTTCATTCGTATCGATGGCAGCACACCAGCAGGAGTTCGGCAGAGTTTGTGTGATCAGTTTCAGCAAAACAAAGAGTGTTTAGTCGCTGTTTTGTCAATCACAGCCGCGAATACAGGTTTGACTCTTACCGAGGCCAGCGCGGTTGTGTTTGCTGAACTCTTCTGGAATCCTGGGGCTCTTGTCCAGGCAGAGGACCGTGTGCACAGAATCGGTCAGAAGAATACCGTAAATATTCACTACCTTGTTGCCAAAAAGACTGCTGATGATTACCTGTGGCCGCTGATTCAAAACAAATTGGAAGTTCTAGGTAAAGCAGGTCTTTCAGAAGACGTGTTAGAAGCTGACTGCACGTTCTTCAAGGATCCAAGACAACAGACGCTATTTTCTTTTGTGGAATCTTTCGTGGAAGATTACACGGCTGTCAGCCCCTCAAGTGAAGCTGAAACCACGACATCATTGAACAATAACTCAGACTTTGAAATCCATACGGAGTCTGTTGCTGTGGAAACAAGACAACCGAAAGATGGCGGAAGTGACGCAAGAAAACGGACGAAACCCAAAGAGAGTGTTTCAAAGACCGGAAGCAAGTTTGCAGATTTATTAGCTGACAAGTTTGACTGGTTTGACGACTTTGGAGATGCGGAAGAGACAAGTGATACCGCACTATTTGATATGATAGGAAGTAAAAACGCGCGGTGTGAATCGAAAGGATCAGCTCTAACAGAACCCTCTGCTAAGAGACAACGGCGTTGA

Transcript

rna-Spis11167_mrna

TCGAAGAGGGAAGTTGGATGCATACGAAATAAACTTATTCATTCTCCTAGCTTTTATTGACCCTTTTTAACAGAATAGATGTCAGCGGGAGGATTAACAGAGGAACAAAGGAggagaattgaagaaaatcGTCGAAAAGCTCTCGAGAAACGAGCGGCTCTCCAGGATCAACGACAGCAGCAAGCGCCATTAGTAAAAGACAAAGCTGATGGTAATCGTAATGTTACAAACCTAAGAGGCTCTAACGTAAATTCACAGAAAATTCCAGCAGGCTCCTTGGCCTCTACATCTAAAACCTTCAACTCAGCAGGAACGATaaattcctttcaaagatcGATCTCCAAATTTTATTGTCCTCAGACTCCTTCATCCACGAGAAATTTTAAAGACACTAGTCCATGCAAATCGTCTGGTGGAACAGCAACTACAACTAAATCAACTTCTTCAAGAACAAGTCCAAGAGCAGGAACATCAAAGCCAAATACTGGTAACGTTTCGAATTTTAAGGGGAATTCAGAGAAGCAAGTGAAGGGGAACTGTACACTGATCAGCAGACACCGATTTACCGTAGTGGTTCCTTATCAAGCACAGCTCATAGGAATTTTCAAGACTTTGCCAAGCAGAAATTATGATGCAAAGACAAGGCAATGGGACTTTTCTTTGACAGATTATGATAAGCTCATGCAAACGGTTCACTCCCTATCCCCTGATATTACAGTGGAAGGATTACCTAAAGCAGTGAGATCAACATTTCTTAAGACTACTCCAGGCACTCTGGAGGAAATGCCGACCAGTGATATCAATTTAAACTCTGTGGATCACAAGCTTGTTAAAGCACTGATGCCATTTCAATTAGAAGGAGTTAGTTTTGGAATACGCCATGATGGAAGAGTGTTGATTGCTGATGACATGGGACTGGGAAAGACAATCCAAGCCATCTGCGTAGCAAGCTATTATCGCGTTGAGTGGCCCCTACTGGTTATCACACCATCCTCTCTCAGAATAGCTTGGCGAGAgGCCTTTATCAAATGGCTCCCCTCTGTTGACCCAGAAGACATTAATGTAGTCCTTACTGGAAAGGACAATCCAACTGCTGGGCTTATCAATGTAATAAGCTATGATCTTATGTCTAAATGTGTAGAGGAGTTGAAGAAGAAACGGTTTAGAGTCATTATAGTGtggaacctcgatttaacgaagggccaagggactggggaaattgGCAGCCACTCGTGTGATCCTGTTATCTGGAACCCCAGCTCTCTCGAGGCCGTTAGAGCTGTACACCCAGATCTGTGCCGTCCAGCCATTGTTATTTCCCATGTTTCATCTGTTTGGAATCCGCTACTGTGCCGGCCAACAGaaTCGGTTTGGTTGGGATTTTTCAGGCGCATCCAACATGCAGGAGCTTCAACTACTGTTGGAGGAAAAGATGATGATCAGaaGTATAAGTTCATTCGTATCGATGGCAGCACACCAGCAGGAGTTCGGCAGAGTTTGTGTGATCAGTTTCAGCAAAACAAAGAGTGTTTAGTCGCTGTTTTGTCAATCACAGCCGCGAATACAGGTTTGACTCTTACCGAGGCCAGCGCGGTTGTGTTTGCTGAACTCTTCTGGAATCCTGGGGCTCTTGTCCAGGCAGAGGACCGTGTGCACAGAATCGGTCAGAAGAATACCGTAAATATTCACTACCTTGTTGCCAAAAAGACTGCTGATGATTACCTGTGgccgCTGATTCAAAACAAATTGGAAGTTCTAGGTAAAGCAGGTCTTTCAGAAGACGTGTTAGAAGCTGACTGCACGTTCTTCAAGGATCCAAGACAACAGACGCTATTTTCTTTTGTGGAATCTTTCGTGGAAGATTACACGGCTGTCAGCCCCTCAAGTGAAGCTGAAACCACGACATCATTGAACAATAACTCAGACTTTGAAATCCATACGGAGTCTGTTGCTGTGGAAACAAGACAACCGAAAGATGGCGGAAGTGACGCAAGAAAACGGACGAAACCCAAAGAGAGTGTTTCAAAGACCGGAAGCAAGTTTGCAGATTTATTAGCTGACAAGTTTGACTGGTTTGACGACTTTGGAGATGCGGAAGAGACAAGTGATACCGCACTATTTGATATGATAGGAAGTAAAAACGCGCGGTGTGAATCGAAAGGATCAGCTCTAACAGAACCCTCTGCTAAGAGACAACGGCGTTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF07443 all species →	HARP	HepA-related protein (HARP)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR010003 all species →	Domain	HARP domain	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45766 all species →	DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0031297 all species →	Biological Process	replication fork processing	Interproscan
GO:0048478 all species →	Biological Process	obsolete replication fork protection	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1	EC:5.6.2.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.