Gene detail

Detailed information of PFX24289.1 in Stylophora pistillata

Genomic Location: Spis.scaffold181:250043...257628
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis11138_mrna

AAATGGCTGACAATTACAAACAAGTGAAATCTGGCCGTTTAAAACTTAAAGGATTGGACGATGGCTCGcggaaaaagaagcaaaagaagaagaagcgggagagagaggaagaagagCCAACAGATGTTGATGTACTCCGTCATGGTGGTTGGAGAAAAGTGGAAAACTTTCATGAAGTTAGTGGTAACATTGCACTGCAAACTTTCCAGAAATCTTACATCGAGGCGCTTAACACCGGATTGTTTACAGTTGGTGAACTAAGAGATGATGGTGAAAACTCGCCGGCGCCTGTTGAAGTTTTTACTGCTGTTCCACTTTCCGAGAAAAAGATTGCTTTAAAATCGGGCTAtgGAAAATATATGGCGGTTGATATGATGGGAAATGTCACTGGAAGATCAGATGCAATTGGCCCTCAGGAACAGTTTGAGTGTTTATTTGAAGAGGACAAAGTTGCTTTTGAAACATACAATGGCTGTTATTTGTCCGTCAATGAAGATGGACAACTCTCTGCAAGCAGAAAAACTGTTGGTGAAAAGGAGACATTTCATGTGCGGACCAGTGTTCCAAAAGTTAAAGTGTGCACCAGCAGCCTACCTGAGGGGGGAAAAGATCTACGGAATCACGAAATAAGTTTTGTAAAGAAATTCCAAAGTTTTCAAGACAGGAATTTGCGTCTAAGTGAGGAAGAGAATAGCAGACTGAAAAGAGCAAGAAACGATGGTAAACTTCATGAAGAAATGTTAAACAGGAGAGAAAAGATGAAAGCAGATAGGTATTGTAAATAAATAGCCAAGGAACTGAAGAGTGAGTATAAGAGACACATTGATCTAATGTCACAGTGTGGGGAATACCTTGTAATTTGACACTTGATATCACAGAACATTATGTAGTCATCTTGCAACCCACTTTAGGCTGCATCATAACTTTTGCAAAATGCTTATGTCATTGATCTAGTGAATTTAGCTATAAAGAAGAGTCACATTTTTATGTAGTTTCATTGGAGCAGTCAAATAGTTAATCAGCCTTCAAAAATACTTGGAATCTGTCATTTTcccacttttttgttttgctattttaaTCTGCAAATCCACTTGGATTTTTGCCAGTCCTGACGTTGAGGACTGGCAGAAATCACTTTTCATGATCTAGTGGAATTTAAGTATATGTGTTATTCCTCTGATTGTGTtgaaaaattggcaaaatagGAATGAATTTTGTACAAAAGGCCCTCTAGAGCACTTAAATGACCAGATTATACATGTGAATGACAATTTGACCAACAGTCTTCAAATTCAGTGATCTTtatcactcccaagatctaataaCCAATgctccttactgtctgtcataaTATGTAGTATAATTTAACATTGAGAATTTTTTGTTAAGTAAAACGTTATCCCTATGTTGATACTCTCATCTGAATGACTTCTCTGTTTAAAAGTGTATAGTTATtgtaaggaaagaaaacattcaGGTCACTCTTAGCAGTGGGCTGAAAATGGAACAGCTTCTCAAGGGTTTTTAAGGTATAAATGACATTTGTGTTGATTTAGTGACACACCTGGTGTGAAAATACATGACTGTATATTTTCTCAGGTTTTATGTTTAACATGTGTCGCATGCTGACGTGGTTAAGACTTGACATTCTTTTTGGTGGTATATTTTTATGGCCCTCTTCATCCTGAGTTCCAAAATTTACGTCTCCCCCCTGTTCActttatattcaattttttgaaTGTCATTTCCAAAAACtgagaaacattttttcaagatCTTGCAGAACTGGACACTTTTAACTGGTTAAGTCTGTCAGGGTTTTACTGCTTTTGTTGTTTAGAGAATGTGCTAAATTCTGGGTCTAGCCCtgttgaagaaatgaaatgcCTTTATTATTCTGTTTGAGAGGTGTCCTTGTTCCAAAATAGACTATTTTCTTGTTGGTataaacaattttccttttagAACGAATTATATTCCCCTTAATCAGATccacaaagagaaagaaaagaaaaggtgtggTAAATGgcatcaaattttttaattcaattcttagaaaattaattttttccaaaatagttTTCAGCATCacacacaattaaaaaaatttaaaatcttctTACAAAATGATTGTCTTTGTAAAGCTACTCTTAATCTGTCCTTGCAAAGTCAGACATTGACCTTAATTATCATCTTTCAGAACCAACCCATTACCCTATCCCTCATCTCTTTATCCATCCTTGAAAAGATCACTGTTCAGTGCTTTAACATTACATTCATTATGGTTAATTAATGCTTACGATAACACCATATGCTAATTGCCCATTAGAGATCACCCAAAATCCTCAGAAGGCTTGGTGCTTTGTTTTAGGGATATCAAAGGTGCAAACAAgtctgaaaatgaaacaattttaggtATGAAAGTTCCTTGGGTATTGTCACGCGATCAGTAATGGGACAGGAAAACAACAGGGGAAAAAATACTCTTCTTTCACACCGCACGAATGGTGGGTCCCATAAGTATTACACCTTGTGAGCAGTAATTTGTTAAGTGAGGATTTTAAGGGATAAGTCTTGCTAACAATGTATTAAGAGCCCAGGCTCTTTTCTTAACTCTCATTCTTTTCAACAACAGTGAAGCGTTGATGGCTTTACACCTGTTTCCCTTTAGGTTGGCAAATAGTCAGTAATAATATTAATTGTACTTACATGTGCAACCTTCCTTTAGTTTGCATCATTTTCTCATGTTCTAAGTGCCTAAAATTCAGGCGATACACTATAAATAAAGTACTATCAAAATCCAGTTTTGAACTCTTCGATTCCTCAGCATCAATGAAAACTAGGTGACCAATGTCTTTTTGTTAGATCCCAAACTCTAGCTACATAGGTGTTGAGACACCCAAGACCGACCCTCGATCTTTTTTTGAGGCAAAACCAATTCGTTTTGACGCATCTGACTAATCACTGCGGTAAATGGTTTGACTGGACTACACTATTACATAAGTAATCGGTGTTACTATTTCTTACAGCCCCATCTTCTCAATGTATAGTCTTAATTGTCAGTGGTTGTGTTTCAAATGTCACACCCGTGCAAAATTATCGTTAACAAAGTCATTTATTTTCTGAACCAGTGACTCACAAATTTCTAATGCGTCTTGTGCTTGATCGCTCGTAAAAGCTTCTGCAGGAATCGTGTCGCCCCGATGAAAATGAGGATATCTAGTTTGCTCGTAGTAATTCTTGAGCTTAGCAGCCAGGAGGGCAATATCATCAGGAGATCCATCCAACTCAGTAATCTCATATGCAAGATTCAGTACATCGTGTGTTTCTAGTTGTTTCTCAGATATGCCGCAAGCTGCATACAAGGCacctttgaaaactttttccgtagcttgttgACATAAAAAGCAAACCAACGCAGGGAATTTCGTTTGTTGACTTTCTAGATGTTTTGCAGCGTTCAGGTCTTCTTTGGCTTGTTTCATCCACCGCTTGGCCTCGTTCTTCTGAGGGTTTGTAGACCTCTTGGAATAAGGAGTTCCTTGATGATTTTGTCGTTTAAACGTGTCATAAGTTTGCCTCTCTTGCCGAGCACGCTGGTTCCACTGGTTGAAGAAATCGTGAAAATTGCTTGCTCCATCTTGCGTTCCTTTCTCTTTGGCATCTCGCAGATTGTCTCTCCAATTCGAAGGAAATAGCTTTTCCATTCTCTCTATTTCGTTCAGCAGGAATTGCATCACATCATTGGCAATGTCAGAGCCTATATTTTTGTCCGGGTGCCATCGGAGAAACAAACGCTTAATGACTTTCCTTCTCTCATTTTCAGGTAGCTTCCAAGCCTCCCACAGGGTATCCTTGATTTCTTGTTTCGCCTTTTCAAGGCGTTCATTTCGACTCGCTGCCCGGCGCTCTGATTCCTTGGGGTCTCCGGTGAAAATTGATACTTCACGAGAATCCGAGAGCTCGGGTTCTGCATTTGGAACTTCAGCGTTAGATCGATCAAATTTGTAAAGATCAAGTACGCTTACTTCTACGAGGCGAGGCTCTCCAATATCAACGCGATATTTGGCCTTGAAGTCAAATCTGCTGGTTCCCATGGATCTTTTACGATTTGGCACTTTCCTCACCACCTTGGCGTACACGTAAAGAGGCTCAGAGTCATCAATTTGACCATCTTCAGTTCTACGTTCTTTCTCGTAGCCAACTATTTCACCTTGCCGAAAAAAGTATTCGATGTCTTGCCTGAGCAGGTAGTGATACATCACCGGAATCTCAGATCCTAGAACGGGCTCCGTAGTGCGCGCCTCACTTCCCATGAGATCTTGCGCTACACCGCATCTGTCGAGTGAAGGTAGGATCTCCTCTGGTACCCTACATGCAAGCATTGCCTGAAGATAGATCTCCTTCTCTATTTGATTATGTATCAAACGATTTACTTGAAAGCAAAGTTGGATGTGGAGGGGATTTTCGTCTGTGCCATGCCTAATGAACAATTCCCATTCGCCATTCTGTTCTTCTAAGAAACAGTCTTGGGTTTCTTGGCTGTGTTGTAATGGTTTGCCAGATTCCAGGTGAATCAGATGAGTGTCAAGTGATGCCATGCAAGTTACATTGAGCGAGCTACAAAGGACTTGTACTTGATCTTTGACATCTTGAGGCAAATTCGGTGTCTGTCTTTGATGACGGATCACACGTAAAATTCCGTTCACTAACTTCGGAGAGAGCAAAACGTTCCGATATCTGTTCACAAATGGACAGGGATCTGATCCAATAGTACTGTCTGCTATGCATTGCTTATCTCTACAGGTAGGATGTATCTCCTCCCGCAGTAAATTCTGAATAGTCTTTGCCCTAAGACGCAATGGCAGAAGACCGAGAAGGTAAGAGAGGCGGTCTGCAGTGAGTTCTCCTTCCCGACTGATGTCCACAAAGTCACCGGCAAAGTCTCGTGCACGACGTTCAAAGCTGGGACAATCGTGAAAGATCAGTTCATTTGATGGCTTGAGAAAACCTTCTTTGCTAGGTAAAAATAGTTGATTCAACGAAAAAAGGCATTTTGTTGCAGCCTCTTCGCTTTTTTCCTTCACTAACTGTGATAGGGTGGTGAAAAATCCACGTGTAGCTTCTCTAGCCACCTTTTTCTCATTGGGCTCCATATGCTTATCCTCACACACCTCCTTTAGTCTCCCGAGGACGTCTGCAAATTGCGATGGTGTTGGTTTTTCATTTGCTCCAAGTCTCTTAAGTACATGCTCAAAATGGCCGTACTCTCGCGGTACTTTATAAAAGTAAGGTGGCATCTCTGTTGTCGTCTCAAACGCCAATTGATTGCCTTCCACAAAAACGCGACCTTCCTCAACGGGTATGCAAGGTGTTTTCTTGAGAATGCTACCAATGGCTAGGCAAGACTTAGTACACTTGTCTGACAAAGTGTTACTGGGACAATTACAATCACCTTTCAAGAAAGTAAACGTCTCGTATATGACATCATGAAGAAGCTCCCTTTGGTCTTTTGGGGTGTCTTTATGGACATTTCCGCTGTGTGCTTTTGTTAGAAGAGTGATGTGATTGATAACTTTGTCCAGTGGGGGAAGAAGTGCGACTCCGAGGTCTTCCAAAACTTGTTTCTCGGCGGAATTAGGAGTGGCCCAGGCTGGAAGGAGGGCAATGGAGGTCCAGGAAATTTTCTGTTGTTCGCATGGTAAAGCTCCGTGGAACTCAGTAAAAGGAGGAATGTCTTCCTTACTTTTACACGCATATTGAGGCTGTAAGTTTGTTAGTTGTTTAGATGCAGTTTCTGCTGCGACAAACTTTATGCTGGATACGACATGTAGAAAGCTTGGGTCGTGCAGGTCATCCTGTTGAAACAGACACGTAACCAATGTTTTAGATACATCCCTCAACTGAGTATCTTGGAACCCAGTCATTGCATCAGAAGCTAGGGATTCTGCAAACTGGATAAATTGTTGTTGGGAAACACGGTACTTGAGTCCTACTTGACGAAGGAACGGGAGCCAACTTAGAAGGCTGTAATTTCCTGGTGGAAAATCACCGGGAGAGAGCAACTCTCTGAAGACTGGATTCTCAGGATCATAAAAATTGCTTACAGGGACAAGTGTGTCGCTTTTGTCTGGAAAAATACGTGCTTCACACAAAGCATCGATTAAAATGCTCCTCTCAGTGGAACTCTTTAAGGTAACGAAGAGAGTATCTTTGATGTAGAGCAGCACTTCCTGAAGGCCTCTCTCCGACATTGCATCAAAGTTTGGCAATATGTATTTGACGAATACGTCTACTTGTGACAGCTGGCTGATGTCAAGAGCCTTGTACAAAGGTTCTATTTCTTGAATCGCTTCTAATAGTACACAACTTTCGTTTTCAATGCGCGCTTCGATGTCAGCTAGGGATACACACTGAGGCAGATCGACAACATACGAGAAGGCATAAGAATCGAGACTCACAAACTTCCCAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06229 all species →	FRG1	FRG1-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010414 all species →	Family	Protein FRG1	Interproscan
IPR008999 all species →	Homologous_superfamily	Actin-crosslinking	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12928 all species →	FRG1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0055120 all species →	Cellular Component	striated muscle dense body	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13122	FRG1; protein FRG1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.