Gene detail

Detailed information of PFX24297.1 in Stylophora pistillata

Genomic Location: Spis.scaffold181:187035...192605
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis11132_mrna

aaaatggcggcggaAGATGCGTGCTTCGACGAAGAGCTTCTTTTTACCGAATTTGAggcagaaaaggaaacaaaaagaccATCAGAAGAGAGGAATGATTGCCCTGGTAAAACGCCTTGGAACACGTTACTACAAGAAAACATACGGTTGAAGAATGCTTTGAAATCTTTGATCGGTGTGTGGAAGTTGAACTGTGCCACTACAGCTGAACACCAAGATAGGTATTCTCCTTTATTTCAAGGGATTTTTTTCGATAACAAGTCTTCGATTAGATCCAGAGAAAAGGTCGAAGAATTCATTCAAACTATACTACGACGAACCGACGATTTTAATGAGGGAGAGTCGTTTGGAAGCCAAAATTTTCCAGCTTCCGTCTTTGATACAAATTATGAAGTGGGCAAGTTAGCTGAGGACAAGGGTTATAGCCAACCTTTTTCCATCATTAGTTCTTTGCAGTACTACGATGAATATTGTATAGACTGCAGTGGGCTGCCGTTAGTTGATCTAAATCCTCAGATCAGTGATGGTTGGACAATTCCTCAATACGAACAAGTTTATTTTCGAGTTTTGGCTCCAGATGAAACACCAAAATTGAAGCTGAAAAGTCGGAGTTGTTGTTTCAATTGTGGAAATCCTGGACATTCTCTCCAAGACTGCCCTGAGACACATGATTTGCAAAGAATCAATGCAAACAGGCGAGAATTCCACAATAAGTTTGCTTCACCAGTGAACTTAAGAACTAGATACCATCTTGATGATTCAGCAATGAAACGCTTTGGAAGGTTCAAACCAGGGTTGATTACTGATGAGCTAAGGGAAGCACTCGGAATCACAGAGCAAGATTTGCCACCATACATTTACCGAATGAGACATTTGGGTTATCCACCAGGGTATTTACCAAAGACTGTGAAACCAAGTTTGCTTATTTATGATGGAGATGGCAGCATAAATGATTACATTGAGGAGGAAGATGAACACGAGAATGAAGAACACTTTAGAAGTTCTTTCATTGAATACCCAGGATTCAATATTCCCTTACCAGAAGGTGTTAGAGACAGTTGTGCTGAGGTGGGAGCTCCTCCAATGCTGCCTCATCAGCAGATTGACAATTTAGTGGCCAAGTATGTGCACATGAGAGGAATGTCATCAAACTCTGCTGCTTTAGGCAGTGACAGGAAACGAAAAAGAGTGGAACTGGATCGGGAAGAGCAGGACATGGATGTTGAGGAAGATGGTGAAACAAATGCTTCCTTAGTGCTGGGCTCAACAGTCCTTCCACATAATCCTGCTGCCACCAAAAGAACAAAGTATGATGACATGCAAGAAGATGTTGTTGTTGACAGCAGTGGTGGCTACTCTCCCTCTCACCCTGGTGTTCAGTATGGAACACAAGAACAGGAACTTCTTCAGCAATACAGGAAACACTCTGCAAGCAAACCCACTCCTTCCACCTCAAAGGAACTACACCCAGAAGCAAGTAGTGCCACTAATAAAGCCAAACCTCAGAAAATAAGAAGGAAGGTCCGGAGGAGTGTGGAAGAAGGAGAGGTTGTCTCTGATGAGGAGGGGGAGCTTGAAGACGTGGACGAGAGTGAGATGGAGGAGACAGAAGAGGAAGTTGCAGATGATTACCCCTAGGTGACACCTGGCTGGTGGCTAAGAGAACCTTTAGATTCTGTGTTGGCAACAACACAGCCCAAGCTGTCTCCTCCCCCTAAACCATCTGTGCAGCTGCCTTTGGATGCACTTTCAAGATTTTACACCAACAGCACTGTGTTGCAGAAAATGAGTTTTGAGGACAGAGTAATGTGGCTGGATCCAATATATGGCAACCTTCAACCAGTATCAGGGCGATATGACAGACTCAGGAAACTTCTTGGAAAGACAAATACTGCAAAATAAATCTGTGAACAGACTTCATGCCAGGTATGGGAAGTAAGAGGCACTTTTTACTCACCAACGTTTTATAGACAGTCGTTATTATCTGGTGATTAAAAATTGACTTTCCTCTTGTTTGAGGAATTTTAAATTCTTAGCTCAATTTTAGTTCTAGGACTTTTTATATCCAGTGGAAttgaaatgtcaaaatattgtGGCACTTTAATGGTTTTCATTACCCAACCAGTTTTGAGAGCATGGGCTATTTTACTAATCTTGTAGTCAGCAGGCTGTCATGTATACGTCACGTCAAACTCCTTAGAACAGAAAGTCGTCCCTtgaagtttttaaattttactcagTGAAAGAGGAATTTGTATAACCAAACAAGTTGGGCTCTTAGATTAAACGGACAACAATctcatatttttatattaaattttaagtTTGTAGACTAGAAGTTACCCCAAGCACTTAGAACCGATAGCGACCAATAGGATGAAAGCGGGAGAAATCAATGAGCATATTAACTGACTTATTCAGCTTCGTTTGGAGCCACATCACAAATAATTCTCAATTGTAAACAATTCAAACCCTTTTTGTTATcgaggtgattcctcagaaaaaaatgttatcgaccaatctttttaaaactttccttaaatgttccctACCGATGcctgtttcgaaaaatacattgaaaacaaaagtcaccgtgcttgtttaagagaCTTGACGGGCCAAACTAACCCCATTGTTTACCTGTACTGGCATTAATCGCGCGCGTTATTTCATCGGTGTCACGGTACATTTTGCGGTAGCTGGAAGCTAGGGTTTctaaagtaacacttgaaagAAACTTAATAGATAGAAAGTCACGAGAGTATGGAACAATGTGATATATACTATGTGGAAAAATCACGCAATTTTAAACGACAAAGACTCAAAACGTTTCTCTagtcgttgctttcaaggtcataatTTGAATCCTCATCGGCTTCGTGCACACTTTTAGCTAgatctttttttcccttcgatgaatttttcatgaatttctGCAATTGAAAGGGGATAATATATACAGAAAAATTATGCACTAAAGAATTTTAGGCGACCGTGCTCGTTTGGTCCATTGATTGAAACGCTTGATTTTTTTGCGCAGTACAGGATGTGAATTGCATTACCGAGGAATCACCTtaacaggggtttcattaatgtttttgGCAGGAGGGCAACTGATTTTCACAGGTTGGCAAAAGCTTTtaaactgaacttctttataaggtaaactttcctccagatcgtcaaaccaggtgggcaaaaccgtgGTCACAACCGGTGaatttgcctggtgcccaggcccttaaCGAAACCCCTGAGGCTTAATGAGAGCAACAAGGCTGGTTTAGTTTTCTTGATCCCAAGTTTTAGTTTTTCCTCTGTATGTATTTCAGTTACTTGAAGACATGAAATTCTGTGGAAGGAGGGAATAAGATGTATTCTCTGTACTTACAACAGACTTCAGtaatcttgtaaaaaaaaaactgttactCTTTATTTAAAGAGATTGAAAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04046 all species →	PSP	PSP	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006568 all species →	Domain	PSP, proline-rich	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR052115 all species →	Family	Nuclear exosome targeting complex subunit ZCCHC8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13316 all species →	ZINC FINGER, CCHC DOMAIN CONTAINING 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0034470 all species →	Biological Process	obsolete ncRNA processing	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13128	ZCCHC8; zinc finger CCHC domain-containing protein 8	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.