Gene detail

Detailed information of PFX24534.1 in Stylophora pistillata

Genomic Location: Spis.scaffold174:356235...372234
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Pka-C1

ATGGTGAGATCTCTAGCCAACAAAATCAAGGGCTTAGATGCGAAAGATCCTTTCCGAGCTGAAGCCACGGAGCAGTTATTGGAGAAACTTTACTCACTTGGGTTGATCACGGCGAAAAAGAACTTATCTCTGTGTGAAAAGCTGAGTTCATCGGCTTTCTGTCGTCGAAGGCTTCCAGTTGTAATGGTGCGACTACGTATGGCTCAGGCCGTAAAGGATGCTGTGAAATATATCGAACAAGGGCATGTTCGAGTTGGACCAGAAGTTATTACAGATCCTGCTTTTCTTGTGACAAGGAACATGGAGGATTTTGTGACGTGGACAGACACGTCGAAGATAAGGAAACACATTATGGAATACAATGATCTTAGGGACGACTATGACTTTTCCGCGGTAATTGAATTACCCCTTCTGCTCAAGGAGAGGTGTCAAAAACTTTACCGAAGGTCGCTGTGCCGGAAAAAGGGATTTGGAGCAAAGCCCAAACATGAGAACCAGCTTGTGACTACCGGTAAAAAGATGGTGGTAAGAGGTGTTGTGGGTGGCTGTGGACTGCACAGTATTATCAAATCCAAGACATTGCTGTCGGGACCTTCGGGTTTCGGGAAAAAGGTGAATACGGCGAGTTTGGAGGACTTCGAGCGAGTGAAGACCTTGGGTACCGGATCATTTGGTCGGGTTATGCTCGTTCAACATAAGAGCAGCCACAAATTTTATGCCATGAAAATTCTAGATAAACAGAAGGTGGTGAAGCTGAAGCAAGTGGAACACACTTTAAATGAAAAAAGGATCCTGCAGGCAATAACTTTTCCATTCCTGGTGAACCTGGAATGGCATTTTAAGGATAATTCCAACTTGTACATGGTATTAGAATTTGTACTTGGAGAAACTATTGGGAATCTGGGCACGAACTTGACTCATAGGGTCGTCTGGGATCGTTTGGGTGGACATGCGAAACTTCAAAATGGCAGTAGCAAGGAAAGTTTTCACAAAACACTAAAGAAAAAAATGGTAAAGCATGCTAATTGTTGTGTTCCTGGATGTACAAATAATTACAGAACCAAGGATGGGCTTTCGTATTACCGAATTCCAAAGGACAAAAAATTACGAAGACAGTACAAAATTCTAATTCGTAATGCAACATTAAAAATCGACGCCGATAATACATGTATTTGTGGAGATCACTTTGAGGGTGGACATAAGCGCAGCAGGCTTCATTTACCTTCAATTTTTCCATGGTCTAAGCATGTGGAAACTCGACGTATCTTAAAGCGTGTTTCTTCTGAAAAAATTGTAAAGAAAGTCCATTCCGAAGACCCTTTGCCAGAAAGTGATCTCTGTCAGACAGAGGATGTGCTGGTCACAAGGGAGCAAGGTATGCAAACAGAACAAGTGTGCAACAAAGATGAATCTTTGCAAACTGAATGTTATGAAGAGAAAGCAAAAGCAACCTTAGAAACTACATACTTAGATGCAAGTGAAACACACTCAAGGTTTTATGCCTCGCAGATTGTGTTGGCTTTCGAGTACCTTCACTCATTAGACCTCATATACAGGGATCTAAAACCAGAGAATCTTCTCATTGACGAGAAAGGTTACTTAAAGGTAACAGATTTTGGTTTTGCAAAGAGAGTGAAGGGGAGAACTTGGACTCTGTGTGGAACACCAGAATACCTGGCACCTGAGATCATTCTTAGCAAGGGTTATAACAAAGCTGTGGATTGGTGGGCTTTAGGTGTTCTTATCTATGAAATGGCAGCTGGTTACCCTCCTTTCTTTGCCGATCAGCCAATTCAGATTTATGAAAAGATTGTCTCTGGCAAGGTACGATTCCCATCACATTTTACAGCTGATCTGAAAGACTTGCTTCGAAATCTATTACAAGTTGATCTGACAAAAAGATATGGAAATCTAAAGAATGGCGTGGGAGACATCCGAGGTCACAAGTGGTTTAGTTCCACAGACTGGATAGCTATCTATCAACGAAAAGTTGAAGCCCCCTTTATTCCCAAATGCAAAGGTCCAGGAGATCCAAGCAACTTTGACGATTATGAGGAGGAACCGCTGCGCATTTCTACCTCTGAGAAGTGTGCAAAAGAATTTGCTGATTTCTAA

Transcript

rna-Spis10868_mrna

ATGGTGAGATCTCTAGCCAACAAAATCAAGGGCTTAGATGCGAAAGATCCTTTCCGAGCTGAAGCCACGGAGCAGTTATTGGAGAAACTTTACTCACTTGGGTTGATCACGGCGAAAAAGAACTTATCTCTGTGTGAAAAGCTGAGTTCATCGGCTTTCTGTCGTCGAAGGCTTCCAGTTGTAATGGTGCGACTACGTATGGCTCAGGCCGTAAAGGATGCTGTGAAATATATCGAACAAGGGCATGTTCGAGTTGGACCAGAAGTTATTACAGATCCTGCTTTTCTTGTGACAAGGAACATGGAGGATTTTGTGACGTGGACAGACACGTCGAAGATAAGGAAACACATTATGGAATACAATGATCTTAGGGACGACTATGACTTTTCcgCGGTAATTGAATTACCCCTTCTGCTCAAGGAGAGGTGTCAAAAACTTTACCGAAGGTCGCTGTGCCGGAAAAAGGGATTTGGAGCAAAGCCCAAACATGAGAACCAGCTTGTGACTACCGGTAAAAAGATGGTGGTAAGAGGTGTTGTGGGTGGCTGTGGACTGCACAGtattaTCAAATCCAAGACATTGCTGTCGGGACCTTCGGGTTTCGGGAAAAAGGTGAATACGGCGAGTTTGGAGGACTTCGAGCGAGTGAAGACCTTGGGTACCGGATCATTTGGTCGGGTTATGCTCGTTCAACATAAGAGCAGCCACAAATTTTATGCCATGAAAATTCTAGATAAACAGAAGGTGGTGAAGCTGAAGCAAGTGGAACACactttaaatgaaaaaaggatCCTGCAGGCAATAACTTTTCCATTCCTGGTGAACCTGGAATGGCATTTTAAGGATAATTCCAACTTGTACATGGTATTAGAATTTGTACTTGGAGAAACTATTGGGAATCTGGGCACGAACTTGACTCATAGGGTCGTCTGGGATCGTTTGGGTGGACATGCGAAACTTCAAAATGGCAGTAGCAAGGAAAGTTTTCACAaaacactaaagaaaaaaatggtaaagCATGCTAATTGTTGTGTTCCTGGATGTACAAATAATTACAGAACCAAGGATGGGCTTTCGTATTACCGAATTCCAAAGGACAAAAAATTACGAAGACAGTACAAAATTCTAATTCGTAATGCAACATTAAAAATCGACGCCGATAATACATGTATTTGTGGAGATCACTTTGAGGGTGGACATAAGCGCAGCAGGCTTCATTtaccttcaatttttccatggTCTAAGCATGTGGAAACTCGACGTATCTTAAAGCGTGTTTCTtctgaaaaaattgtaaagaaagtCCATTCCGAAGACCCTTTGCCAGAAAGTGATCTCTGTCAGACAGAGGATGTGCTGGTCACAAGGGAGCAAGGTATGCAAACAGAACAAGTGTGCAACAAAGATGAATCTTTGCAAACTGAATGTTATGAAGagAAAGCAAAAGCAACCTTAGAAACTACATACTTAGATGCAAGTGAAACACACTCAAGGTTTTATGCCTCGCAGATTGTGTTGGCTTTCGAGTACCTTCACTCATTAGACCTCATATACAGGGATCTAAAACCAGAGAATCTTCTCATTGACGAGAAAGGTTACTTAAAGGTAACAGATTTTGGTTTTGCAAAGAGAGTGAAGGGGAGAACTTGGACTCTGTGTGGAACACCAGAATACCTGGCACCTGAGATCATTCTTAGCAAGgGTTATAACAAAGCTGTGGATTGGTGGGCTTTAGGTGTTCTTATCTATGAAATGGCAGCTGGTTACCCTCCTTTCTTTGCCGATCAGCCAATTCAGATTTATGAAAAGATTGTCTCTGGCAAGGTACGATTCCCATCACATTTTACAGCTGATCTGAAAGACTTGCTTCGAAATCTATTACAAGTTGATCTGACAAAAAGATATGGAAATCTAAAGAATGGCGTGGGAGACATCCGAGGTCACAAGTGGTTTAGTTCCACAGACTGGATAGCTATCTATCAACGAAAAGTTGAAGCCCCCTTTATTCCCAAATGCAAAGGTCCAGGAGATCCAAGCAACTTTGACGATTATGAGGAGGAACCGCTGCGCATTTCTACCTCTGAGAAGTGTGCAAAAGAATTTGCTGATTTCTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01479 all species →	S4	S4 domain	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF05485 all species →	THAP	THAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR000961 all species →	Domain	AGC-kinase, C-terminal	Interproscan
IPR002942 all species →	Domain	RNA-binding S4 domain	Interproscan
IPR006612 all species →	Domain	THAP-type zinc finger	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR036986 all species →	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24353 all species →	CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010737 all species →	Biological Process	protein kinase A signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX24534.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.