Gene detail

Detailed information of PFX24576.1 in Stylophora pistillata

Genomic Location: Spis.scaffold173:362591...380595
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

MAT1A

ATGATGAAGTTCACTGACCAGAGCAATCTCATTGCGGTATACCCTTATCTTGACAACATCACCATCTGCAGGAAAGACCAACAAGAGCATGAACCAAACATTGAAAAATTTCTTGCCGCGGCAAAAGAAAAGAACATCTGTTACAACGACTCAAAAAGCGTCTTATCGACCCGAAAACTTGCTATTCTTGGATATGCGGTTGAAGAAGGCATTATTTGTCCAGACCCAGAAAGGCTAAGCCCTCTACGCAACCTAACTGTGCCGTACGATTCCAAATCACTCAACAGGTGCCTCGGTTTGTTTTATTACTACTTAAAGTGGATACCAGAGTTTTCCAACCGCATGAAGCCACTTAGAAGCTCTAAGTCGTTCCCTCTGTCACCTGAAGCCCTTACCACGTTTGACAGCTTGAAGAAAGCTGTAGAAGAAGCCTTTGTTACCGCTATTGACGAAACTATACCATTTGAAGTTGAGACTGACGCATCTGATGTAGCACTAGCAGCCACACTCAGTCAAGACGGCAGGCCTGTCGCTTTCTTTTCACGCTCACCACATGGAAGCGAGCTTAAGCATGCTGCCATAGAAAAAGAAGCTCAAGCTATCATTGAAGCTATCAGGCACCGGAGACACTTCCTGACAGGACGACATTTCACTCTGAGAACCGACCAAAAATCGGTATCTTACATGTTCGATCAACGAAACCGAGCGATTCTCGAAACATGCAAGGTCGAACACATCGAATTCGAGATAGAAGAATTGTACGAAATTAACGAGAGAGCGTTGGAAACACGGCGAAGGATCACGGATGCGTTTGCCGCTGTCGAAATGAGCGCCGACAAGTTGAACATCACGAAAATTGGTGGAATTAAGGTGCCCTTGGCGTCCCTGGAGTCGCCTCCTATATCTGGAAATCTACACGCGAATGCAACGTTAAATTTGGATTCTGGAGTTCCTTCAGTTCAGGCGTCGGGGAGCTCGAATGCGAACACACTACACGCTGGAAACACGCAATCATCGGGGAGCACCGATCATGCAGGCGTGGACTTTGCAGGTCCTGTATACACGACAGATAAAGGTGGAACAAATACAGATGAAGCTGGGGCGTATGTTTGCCTGGTTACGTGCGCCTCCACTAGAGCTGTATACTTGGAGCTAACAAGAAGACTGAGTGCCGAAGCCTTTCTATTAGCCTTCCGCCGATTCACTAGTAGAAGAGGTTTGCCAGCCACATTACTATTGGACAATGCTAAGACGTTAAAGTTTGCTTCAGGGGAGGTGGACTCATTACCCAGCGGTAAAACCAAAATAAAGGAACCAGTAAGACTGAGAGCACTAGTCAACTGTCCACCAAAAAACTGGATTGTATCGAACTGTGGCATTCGAAGAGCTGTGGAATGTTGCAACGGAACTGAGACTACAAGTGGTCTTCAAGAACTTATTAATTTGCGAGCTTCATATGCTGTATTTGTATTGTCATTTCACAAGTACATCTGTATCACTAAGTTTGAACAGCCATATGAAGAACACAAGCATGGAATTCCTCTTCAGCACATTAGTTCCACTGTAGATCTCTTATCTCTATCAGATGGTCCTGTTACCAAATCAAATATCTGGTTGGATGATGAATCATGTACTTGTATCTCTCCTCACAGAGTACATTACCTGGATGATGATGAACTTAACTTTCTAATAGAATCGTATTCAACATTTCTAGAAGGAGTGGAATTCAGAAATGGAACTGTCATTTTTGACCGTTATGCCAGCTTGGAATTCTGCAGTGAGCGCTCTGAGTCGGTTGGCGAAGGGCATCCTGATAAACTCTGCGATCAGGTCTCAGATGCTATTCTCGATGCTCATCTCAAAGTTGATCCCAATGCTAAAGTCGCGTGTGAAACTGCAACTAAAACAGGCATGGTTCTTGTTTGCGGTGAAATTACATCAACGGCCGTTGTGGATTATCAGAATGTGATCCGTGACACAATAAAAAAGATTGGATACGATTCCTCTGATAAAGGATTCGACCACAAAACCTGCAGTGTCTTGATTGCCCTCCAACAGCAAAGCTCTGACATTGCGGGCGGTGTCCACAAAGATAGAAAAGAAGAAGATATCGGCGCCGGTGATCAGGGTCTCATGTTTGGCTATGCCACTGATGAGACGGAAGAACTCATGCCCCTAACAGTTGTTTTAGCCCACAATCTAAACAAGAAGCTTGCTGAAAAGAGACGAGATGGATCTATGCGCTGGCTGCGACCTGATTCCAAAACACAAGTTACCATCGAGTATGAAGGAAAATTGGGTGATGGTGAAATCAAACCTCTTCGAGTCCACACCATCGTGATTTCTGTTCAGCACAACCCTGACATCGAGTTACAAGAAATGAGGAGGCAATTGAAGGAGAAAATTATCAACGAAGTCGTCCCTGCCAAATATCTTGATGATAAAACAGTCTACCATCTCCAACCGTCTGGTGCATTTGTGATCGGAGGCCCCCAAGGTGACGCAGGTTTGACAGGAAGGAAGATTATTGTCGACACTTATGGTGGATGGGGAGCACATGGAGGAGGTGCCTTCTCTGGGAAGGACTTCTCTAAGGTGGACCGATCTGGTTGTTATGCTGCTAGGTGGATTGCTAAGTCTCTCGTGGCAGCCAAGTTGTGCCGCCGTGTCTTGATCCAAATCTCGTATGCCATCGGTATTGCCAGACCTCTTTCAATTACTGTGTTCTCTTACGGAACAAGCATTAAGTCTGATGAGGAGCTTTTGGAAATTATCAAGAAAAACTTTGATCTTCGCCCGGGCGTGATAGTCAGGGACCTTGACTTAAAGAAGCCCATATACCAGGAGGCGTGCGTGTACGGTCATTTCAAACCTGGTTTTACCTGGGAAGTACCCAAGAAGCTGATTTTTGACTGA

Transcript

rna-Spis10831_mrna

ATGATGAAGTTCACTGACCAGAGCAATCTCATTGCGGTATACCCTTATCTTGACAACATCACCATCTGCAGGAAAGACCAACAAGAGCATGAACCAAACATTGAAAAATTTCTTGCCGcggcaaaagaaaagaacatctGTTACAACGACTCAAAAAGCGTCTTATCGACCCGAAAACTTGCTATTCTTGGATATGCGGTTGAAGAAGGCATTATTTGTCCAGACCCAGAAAGGCTAAGCCCTCTACGCAACCTAACTGTGCCGTACGATTCCAAATCACTCAACAGGTGCCTCGGTTTGTTTTATTACTACTTAAAGTGGATACCAGAGTTTTCCAACCGCATGAAGCCACTTAGAAGCTCTAAGTCGTTCCCTCTGTCACCTGAAGCCCTTACCACGTTTGACAGCTTGAAGAAAGCTGTAGAAGAAGCCTTTGTTACCGCTATTGACGAAACTATACCATTTGAAGTTGAGACTGACGCATCTGATGTAGCACTAGCAGCCACACTCAGTCAAGACGGCAGGCCTGTCGCTTTCTTTTCACGCTCACCACATGGAAGCGAGCTTAAGCATGCTGCCATAGAAAAAGAAGCTCAAGCTATCATTGAAGCTATCAGGCACCGGAGACACTTCCTGACAGGACGACATTTCACTCTGAGAACCGACCAAAAATCGGTATCTTACATGTTCGATCAACGAAACCGAGCGATTCTCGAAACATGCAAGGTCGAACACATCGAATTCGAGATAGAAGAATTGTACGAAATTAACGAGAGAGCGTTGGAAACACGGCGAAGGATCACGGATGCGTTTGCCGCTGTCGAAATGAGCGCCGACAAGTTGAACATCACGAAAATTGGTGGAATTAAGGTGCCCTTGGCGTCCCTGGAGTCGCCTCCTATATCTGGAAATCTACACGCGAATGCAACGTTAAATTTGGATTCTGGAGTTCCTTCAGTTCAGGCGTCGGGGAGCTCGAATGCGAACACACTACACGCTGGAAACACGCAATCATCGGGGAGCACCGATCATGCAGGCGTGGACTTTGCAGGTCCTGTATACACGACAGATAAAGGTGGAACAAATACAGATGAAGCTGGGGCGTATGTTTGCCTGGTTACGTGCGCCTCCACTAGAGCTGTATACTTGGAGCTAACAAGAAGACTGAGTGCCGAAGCCTTTCTATTAGCCTTCCGCCGATTCACTAGTAGAAGAGGTTTGCCAGCCACATTACTATTGGACAATGCTAAGACGTTAAAGTTTGCTTCAGGGGAGGTGgactcattacccagcggtaaaaccaaaataaaggaaccagtaagactgagagCACTAGTCAACTGTCCAccaaaaaactggattgtatcgaACTGTGGCATTCGAAGAGCTGTGGAATGTTGCAACGGAACTGAGACTACAAGTGGTCTTCAAGAACTTATTAATTTGCGAGCTTCATATGCTGTATTTGTATTGTCATTTCACAAGTACATCTGTATCACTAAGTTTGAACAGCCATATGAAGAACACAAGCATGGAATTCCTCTTCAGCACATTAGTTCCACTGTAGATCTCTTATCTCTATCAGATGGTCCTGTTACCAAATCAAATATCTGGTTGGATGATGAATCATGTACTTGTATCTCTCCTCACAGAGTACATTACCTGGATGATGATGAACTTAACTTTCTAATAGAATCGTATTCAACATTTCTAGAAGGAGTGGAATTCAGAAATGGAACTGTCATTTTTGACCGTTATGCCAGCTTGGAATTCTGCAGTGAGCGCTCTGAGTCGGTTGGCGAAGGGCATCCTGATAAACTCTGCGATCAGGTCTCAGATGCTATTCTCGATGCTCATCTCAAAGTTGATCCCAATGCTAAAGTCGCGTGTGAAACTGCAACTAAAACAGGCATGGTTCTTGTTTGCGGTGAAATTACATCAACGGCCGTTGTGGATTATCAGAATGTGATCCGTGACACAATAAAAAAGATTGGATACGATTCCTCTGATAAAGGATTCGACCACAAAACCTGCAGTGTCTTGATTGCCCTCCAACAGCAAAGCTCTGACATTGCGGGCGGTGTCCACAAAGATAGAAAAGAAGAAGATATCGGCGCCGGTGATCAGGGTCTCATGTTTGGCTATGCCACTGATGAGACGGAAGAACTCATGCCCCTAACAGTTGTTTTAGCCCACAATCTAAACAAGAAGCTTGCTGAAAAGAGACGAGATGGATCTATGCGCTGGCTGCGACCTGATTCCAAAACACAAGTTACCATCGAGTATGAAGGAAAATTGGGTGATGGTGAAATCAAACCTCTTCGAGTCCACACCATCGTGATTTCTGTTCAGCACAACCCTGACATCGAGTTACAAGAAATGAGGAGGCAATTGAAGGAGAAAATTATCAACGAAGTCGTCCCTGCCAAATATCTTGATGATAAAACAGTCTACCATCTCCAACCGTCTGGTGCATTTGTGATCGGAGGCCCCCAAGGTGACGCAGGTTTGACAGGAAGGAAGATTATTGTCGACACTTATGGTGGATGGGGAGCACATGGAGGAGGTGCCTTCTCTGGGAAGGACTTCTCTAAGGTGGACCGATCTGGTTGTTATGCTGCTAGGTGGATTGCTAAGTCTCTCGTGGCAGCCAAGTTGTGCCGCCGTGTCTTGATCCAAATCTCGTATGCCATCGGTATTGCCAGACCTCTTTCAATTACTGTGTTCTCTTACGGAACAAGCATTAAGTCTGATGAGGAGCTTTTGGAAATTATCAAGAAAAACTTTGATCTTCGCCCGGGCGTGATAGTCAGGGACCTTGACTTAAAGAAGCCCATATACCAGGAGGCGTGCGTGTACGGTCATTTCAAACCTGGTTTTACCTGGGAAGTACCCAAGAAGCTGATTTTTGACTGAACTTACAGACCAAGAAACGCTAGATGAGAGTGGTCACTATAAAGCAAATAAGAATGACTCAACTGAGTAATACAATAGCAACCCAATTTAATGACAGTGCAGGACAAGAAAGAGCCCCGGAGCATACGAGATTGAAGCCATGTAAACCATATAGTTACTATCGATGCTCCTTTCAAACATCATAAAGTACTTTTTTCACTTAATAATTTGCATAAtaggaaatgaaataaacactTTCTTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00438 all species →	S-AdoMet_synt_N	S-adenosylmethionine synthetase, N-terminal domain	Domain	Interproscan
PF02773 all species →	S-AdoMet_synt_C	S-adenosylmethionine synthetase, C-terminal domain	Domain	Interproscan
PF02772 all species →	S-AdoMet_synt_M	S-adenosylmethionine synthetase, central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002133 all species →	Family	S-adenosylmethionine synthetase	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR022631 all species →	Conserved_site	S-adenosylmethionine synthetase, conserved site	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR022628 all species →	Domain	S-adenosylmethionine synthetase, N-terminal	Interproscan
IPR022630 all species →	Domain	S-adenosylmethionine synthetase, C-terminal	Interproscan
IPR022629 all species →	Domain	S-adenosylmethionine synthetase, central domain	Interproscan
IPR022636 all species →	Homologous_superfamily	S-adenosylmethionine synthetase superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11964 all species →	S-ADENOSYLMETHIONINE SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004478 all species →	Molecular Function	methionine adenosyltransferase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006556 all species →	Biological Process	S-adenosylmethionine biosynthetic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX24576.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.