Gene detail

Detailed information of PFX24798.1 in Stylophora pistillata

Genomic Location: Spis.scaffold167:194454...203586
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis10608_mrna

CTCAAAATGGCGGGCAAACCGTCGTTCAAGGCTGACTTGTTGGGAATTACCTCGGAATGGTTCCTAGATTATTGCGTTTATCAGCTTTGGAAGGAATTCAAAGAGAAACGCTCATTTTCTGACTTCTGGAGAAACGCTCTACAGGATTACTTGTTAAGCGGCCAACACCTTGAAGTACGAAGAGAACTTTCAGATAAGCTCAATTGTATTAGATTTATTATTGGATTGTGGGAACGTCAAGAAGATGATGTTGGTGGAAGTCAGGAAAATTCCCCCTCCGATGATGATGAACAAACCGACAAAAGGATGCTGGGACCGGATTGTctgaaattctttgaaaaagtaacAGGCATTTTTCCGTTTTCTCACGCGGAGAAGTCTCATATGAAAAGCAGTTTAAAGTTACAGGTCATCTTATCATTTTACAGATGTGGTGACATTCAAGGTGCTGAAACCTTGTATTGTAGGTTGTACAGTGAGAGTGGTTTTGATGAAgAGTATCAAGATGACCTCAGGGAATTGTTTCAATCTGAAAATGACACATTCAAGGAGACATTTTTGGGAAAACACAAATATGAAAAGTTTCTCGACCAAGTTCAGAAGTTTTTTACCCCAGCatggaaaaagtttgaaattccaGTTTTGGAAGAGGTACCTTTGTTGGAGAATACAACCAAGGAAAGGCCCAGGATAGATGCAAAAACTTTAAAAGCCCTTTACTTTGCTTGGGATACATCAGATGAAGCTgaagaaaactggaaaagtATAGTGGAAGGAACCCATCCTGATATTAgcaatttgaaagaaataatggGCAGAGAGAAGGGTTCTTCCaacagaaagacaaaaacagcaCCTTCAATTTTGCCTCAACAACAGGTTACGGAAAGCAAAGCAGAGGCAAGTAGCATATCTGCAGGAAGTAGTGTGTCAGAGAGGATTCAGCAATGTCAAGTAGTAATCAATAAGTTGAAACAATCATCTAAAAATCTTTTCTCCAGTAGAAGTAATCTAcacaaaagagagagaaaaccTTTAGAAAAACAGACAATAAAGAGAAGGTATAATGAAAACCAAAGTGATGCTGAAGAAATAGATTGGAGTTCAGATGATGACAATGAAACAGTGTTTAAGCACAAGACAATTAAACTTCCTACCCTAACTAAACGATGCCTTGATGTGAAGCTCCCTGTTGGTCCAGCAAAGAAGTTCTGGAGTGCTGAGGAAACAAGATGGTTAGAAGAAGGTGTGGAATTATATGGCATAGGGAACTGGGCAAAGATACTGAGAAAGTATAACTTTGCTGGGCGAACGTCAGTTAATCTTAAGGATAAGTGGCGTAATTTACAAAAGAACAATTGATAATGACCATGTGGACGATTGAGAGGGATTAGTTAGATATTTCTGTCTATGATGAATATAGAAatacttttgaatttttgtatCTCTAAGGCAATTCCCTGCGATTAATAGGTATTGATAAAACAAGAGAATCTAGATGTTTATATTTTATCAGACTATTTTGTTAAGTGTTTTAGTATGCTTAATTGAGACATAAATCTCCAGGCTTCTTCAAAGTCACCATGGAATAAATGTACATTTGAACTACCCCCATATATTTTTTATGTAGCAATTCTTTGAAATGTCGATTGAGTTGTTTCCTCTCATACTTTGATGAATGGCTGGTTTTAGTATCACATTTGTTTGCTGTTTACGCACTAGTAGATAATTCAGAGTAGAACCTCCCTTCTCTGGTCATGTttccggagattttgaatccaaaattttaaagttggaacATCAATGGGAACACTTTTGAATCTGGAAAGTTTATTTGTGTAAATGAGTTGAAGAACAAATCTGGGTACttttccacctgcaatctttaGAGTTGGTTATCCTTTCCCATGTGAACAGGCTAAGATCATGTGGTAACCCATCCTGTCATTTACACAaggtgacaattttttttccttctttgtatTTGCTTTTGATGCTCTCTCATTCTAAACCTTCGTAATCCTTTTAGGAGGAATATGCATTCATGAATCTGAGCAGAAGTTCAACTTTACTATCTGTCCAACTTAAATTTGCATCTTGATGAACTttagcccttttttttttggtggaatttttttgtcattgattgAGGCAAGAAACAGCCTTGTAAGCACTCAGTCAAGAATATTTGCTGACTTAAATTTGGCAGCATGTATTATTTGACTCAGGATGGTGGTTGTGTCTTAATGATATTCATCAACTACACTGAATATGAATAGAAGTAGTAATAAATCTTTTAGTGGTACAAAACTATAAATGACGTTTTAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR030657 all species →	Family	Telomeric repeat-binding factor 2	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR036507 all species →	Homologous_superfamily	Telomere repeat-binding factor, dimerisation domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46833 all species →	TELOMERIC REPEAT-BINDING FACTOR 2 TERF2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0000781 all species →	Cellular Component	chromosome, telomeric region	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0031848 all species →	Biological Process	protection from non-homologous end joining at telomere	Interproscan
GO:0042162 all species →	Molecular Function	telomeric DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11111	TERF2, TRF2; telomeric repeat-binding factor 2	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.