Gene detail

Detailed information of PFX24822.1 in Stylophora pistillata

Genomic Location: Spis.scaffold166:480061...484229
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis10584_mrna

CGTAAACATGGCGGACTGCGGCAGAATTTCCGCTGTGATATCTTTGACGTTGATGTGCGCTTGGGGTGTTCGTTCTACTGCAAAATCTTCTTTTCAAGACATTCCGTCCGAAGCTTGGAATTACGTGGAAGTACGAGAAAATGCGCACATGTTTTGGTGGCTCTACGGAGCACAGACTAGCAATCCTTCTGAACGGGCAAACAAGCCACTCATCATGTGGCTTCAAGGAGGACCTGGCGGTTCCTCGACAGGGTTTGGAAATTTCGCGGAGCTAGGTCCTCTCACGgtggagcttaaacctcgcaACACCACCTGGATTCAGGTAGCAAATGTTTTATTCGTTGATAATCCTGTTGGCTCAGGGTATAGTTATGTCACCGACCCAAGTGCTTACACTACGAATGTGACCGGTATTGCAAATGACCTTGTCACTCTTTTTAAAGCCTTCCTGGAAAAACAACCTGTTTTCCAGCAAATACCAGTTTACATCTTCTGTGAATCCTATGGAGGAAAGATGACCTCTGCATTTGGTGTGGCGCTGTACCAAGCTATTCAAAGTGGAAGCGTTAAATGTGACTTTAGAGGGGTTGCTCTGGGTGATTCTTGGATTTCACCTGTGGATTCTGTGTTGACCTGGGGGCCTTACCTGTATGCTGTGAACCTACTTGATGGAAAAGATCTGGCATCTGTTGATCAAGCTGCTCAGGCTACTGCTAAAGCTGTTGCTGATGGTAAATACTCAAAGGCCACTGAACTCTGGGACCAGACGGAACAAATCATTTCAGCAACAACAGATGATGTTGATGTTTACAATATCCTGATACACCATGCCCCACCTCCTTCAAAGTTTCAATCTCTCGGAAATGATTTCCTTGATCGCTTGTATGCTCAGCACGTGGGTCGTCTCTACACTGACCCTCTGACGGAGCTCATGAATGGCCCCATCAGGAAGAAGCTGGGTATAATACCATCCAACGTCACCTGGGGTGGACAGTCTGGTGAAGTCTTTGTGTACCAAACTGAAGATTTCATGAAACCAGTCATAGATGATGTTAGCAAACTTTTGAATTATGGCATAAAGGTTGTTGTTTATCAAGGCCAGTTAGACATGATCTGCGACACGCTTGGAGCAGAATTGTGGATTCAGAAGCTTGACTGGGATGATTTACAAGAGTTTCTGAACACCAATCGAGTACCACTTTATACACCCTCAGGTAAGGTGGACAGAGATACAGCAGCATTTTACAAAGCTTACAAGAACTTAGAGCTTTACTACATCATGAAAGCTGGTCACATGGTGCCATCAGATAGTGGAGAGATGGCTTTGGAAATGGTGAAGAGAGTCATTGATGAAGAACACTAATCAATTAAAATGCATTTGTTTAGTCGGGTTAAAAACATCACCTTAACTATCAATTTTAAGTCCAGCATTTTCAGctaattataaattaaagtaatagGTTTTTGCAAAATTGGGTAACAAATAAAAGAGACTTTAATAAGAATTGTAATCTAACTTTGAATCAGGGAGAAACTAGCGGAAATCAATACAGTAGATATTTCTTAAGCTTAGGGCTCCAAGCTCAACTTCTTTCAAAGTCTCCACTTGGTGACTTCAAATTATAGGTAGACACTCATGGCAATAATCATTAAATTTGTACTTAACTGTTGACCACACCACTTAGAATTGGCAGAATGGTTTAtagaagaaaacattgaaacatGAGGTTAATAATTCattcattaaaaatgattatcTCATaacaaagttgtaaaaatgtACAACTTGCTACATCACTGCCAATCAGAGCTTGCAAAATTGGTACCTTACACTGCCCAAAATTTATTTGTAGTTGCCGTGGCTGCTAATATGGCTGCAGCCTAGAGCACTATGATCTATGAGCAGGGGTAGATTACATGAGGAAGATTCAGGTGGGAAAAACAGGTTATTGTTGTTCATGACTGGATAACAATCATTTGGATTAAGGTGTCGAAATTGAGACCATCTTGCAATTCTTCACAGTAATAAGGGAATTCCCCAATTTCTTTACAAGATCCTGGCAATATCTCGTTCAATAACAAACTggtaattataaaataatttggatatacatatcatcaaagttgaaatggtaaattggcc

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002292 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00450 all species →	Peptidase_S10	Serine carboxypeptidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001563 all species →	Family	Peptidase S10, serine carboxypeptidase	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11802 all species →	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004185 all species →	Molecular Function	serine-type carboxypeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09646	SCPEP1; serine carboxypeptidase 1	EC:3.4.16.-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.