Gene detail

Detailed information of PFX24855.1 in Stylophora pistillata

Genomic Location: Spis.scaffold165:55969...68542
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis10502_mrna

atggcggctgtTGGGGATGGCAAGGTAACGGTGTGTTTTGACGTTGTGGCTGTGTTACCGGCGGGTGGATCAGGAGTGAGAATGAACTTGAGACTACCTAAACAGttttgtcaAGTAAAAGAAAGGCCACTGATCAGTTACACCTTGGCAGCATTTGAAAGTGTATCATGGATCAAGGAGGTTGTTGTACCCATCAATGTAAACTATATGGAGGAAGCACAGAAGATTTTGAAGGACTTTCGTCATGGTAAAGTCAGATTAGTTTATGGAGGGTCCACAAGACACAGATCATTATGGAATGGTATTCAAGCACTCACTGCAGATGGGAGAACTCCTCCAACAGTAgtAATTCTTCATGATGCTGTGCGGCCATTTGTTGATGAACAAACATTGAGGAGTGTGACAATGGCTGCTAAAAATAATGGGGCAGCTGGGATGATCAGACCACTTTCATCCACAGTTGTTGCTCAGTCATGTGACGGGTTCCTAGATCATTCACTTGACAGGTCAAAGTTCAGGGCAAGTGAAATGCCACAAGCTTTCAAGTATGAAGTCATTCAGAAAGCCTACATGAAGTGCACAGAATATGACTTTGATTGTGGCACAGAGTGTTTACACCTGGCTCAAAAGTATGCTGATACAAATGCTGTGTTGATTGATGGACCTGAATTTCTTTGGAAGGTTACCTACAGAAAGGATTTGTATTCTGCCGAAGGGGTCTTGAAAGAAAAGCAACAGCAAGTGCTGTTGGTGATAAATGGAACAGACTTCCCAGAGTTCACGGGAAAGCTGCATGAACATATACAGGAGAGAGATGAAATGGTCACGTATCTTCCTGACATATCTGGAGACGGACAACTATCACGAGATATGGCGCAGTGTTTGGCATCCCAGATCAACTTGAAGCTGGTGGCTCCCGGTTGCtgtgtttctgttgtttatgtAACGCAGGACACACACGCAGATGAACAAGTAGTTTGCAAGGGCCATAACACAGTAGGTATTCGGTTGTTTCTCAGATCATTCTGTGAGACGCTCGACTCCTGTTTGTTAAAAAGTGTGAGACTCGTTAATGTTGGATTTCGTCATAGCATTAAGGATTTCGATGCATTTAAGACAGCTGTGAAAGATCTCCAGTCCTGTTTACAGGAACAAGGCGTAAATTGCTTCGGTGTGTTTGTCCTCTCCAACAGTACAAACAAACCAGAgGATAAAGACGCTGTCACTAAGAGATTTGTGAGAGCCGCTGAGTTAACAGTTGGCGCATTATTAGATGCACCGTCAGTATTTAGTGGACAGGCCTTCGACGCGAACACGTGACTCCCCTGTGTAGAGTAATGACGCAGCGCCTGCTCTCGTTCAAAACAATGATGGATAGAGACACAATTCAGAGCCGTTGAGTTCAAGAGTTCAAAAGATCGTAGCGGTTAACACGTTGGAGTTACGAAGCCTTGAATGTCCTGAGGAACAAAAAAAGTCAGCTGTACACCTGACTCGTGGTAATGCTCAGAGGGCAAGAGGTCTGAGTCACGACATGAGACACCACATCCACTCAGAGATCGCCTCAAAAAACTATTGAATTGTGACTGGGACTACATAACTGATACTATGACTATATGCTATGACTCGATGCTTTTAGTGGGAGAAAAGAAGATGAAAGCTTTTCGTTTAGTAATCATAAGATACATTGACTAACTTATAGTTGCCTTCGTTGTCTGCGAATCAAAACTTTCCCACCGAGCTGTAGGTGGTCTGAGGTCGAGTTTGGTTTGCTGTGTACTAAATGTTCACATGTACCATAATGCTGTTGGACAGTTTTATCCGcgatcaacttaaaaaaaagggcaGATAGAGCTATTTTAAATGTAACATTAAAATGTTACGTGCTATAATGTTCAGAGAGAGGAAACAGAGCTGTAACCTCAGTGACACGTTTGAAAATAAGTGGCTTGTAACCGGTATAAAGCAACACACTGTTCATTGCGAAACCTTAAGAGATACTGCAAAGAAAAGATCATCTTATCCAGGGCCCCACTGAAGAGCACCTTTTGGGGAAGTGTGCTCCCAgctaaaatattattatttttttattattactattattgtatataaaaataatcctttattcaccataatcacaaaaattataacaagaattatgataaaatgcttgaaaatcgaaaaaagtgTGTTtaaatgtctaataaaaatgtaagaaaaattagAGGATACACGctatgataacgataattcactctaatcatcaaaaatatttacaaacaaattaagataaaatccttaaaaatcgaaaaatacatcAAAATGTCGACCaacaaattatctaaaaaaatagaaactaaCTAACAAATGGCAGACTCTGAACTTTGAATATCTAGGTCTACATTAGTAAAATCCAATTTGGGCCTTCTAACTGGTCTGGATCCTCTTAGGCAGATTAGGGCGGATCTTAATAATGCAAACGTTGCACTGTTCCAGGAAATTGTCTTTGAATAGtgttctcctttcttgtctgcAATGAGTTCTGCAAGGCGACTGTGATATCTCAAACATTGTTGGCCCATTCCACCAGTCGAAGTAAACACAAGAGGCGTAAATGAACCATGTTTGATGTCTAGAACACGTCTTGCGTGGGAACGTTTCTTCTCATTCTCATGCATGCGGTAAATCTGCTGCGGTTCCAGATTTCTGTATGATTCAGCGTTCGAGTGACAAACTCGAATATCGAAAAATGCAGATCGTTTGTATTCCCAGAAACCACGAGCATGAATGTCTAGCCTTGCATCTTGCACCATGTTGGAACCATTGTGTAATTGCTCTCCTATCGTGTCTTGGAGTTGGGGTTCGATTTCCACATCTTTGCAGACAATTTCTAAAAGCCCAGCTTCTAAGTCTCTAAGTTCGTTGAGGCGCTCTATAATAAAGCCACCTTTTTGCAGACCATT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01128 all species →	IspD	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034683 all species →	Family	Cytidylyltransferase IspD/TarI	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43015 all species →	D-RIBITOL-5-PHOSPHATE CYTIDYLYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0070567 all species →	Molecular Function	cytidylyltransferase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan
GO:0047349 all species →	Molecular Function	D-ribitol-5-phosphate cytidylyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21031	ISPD; D-ribitol-5-phosphate cytidylyltransferase	EC:2.7.7.40	Mannose type O-glycan biosynthesis	ko00515	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.