Gene detail

Detailed information of PFX25057.1 in Stylophora pistillata

Genomic Location: Spis.scaffold161:477418...488898
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis10343_mrna

tcgaacattttgtccaggatctactACCTTCTTACATTTGGTAACCAATCATACGAAATTACGTCAGAGGACTCTCTCGGACTCGACTTCCGTTGGGTCACTCGAGAGTGAAGACGTCTTTAGTTTGTTAGCTGATGCAATGTTGTAGGGAAAATGTCTCATCAAGAGTTGAAACGATCAAGTTCTGTCGGTGATAAACGGCAATGGGTTCGGCCCGATTTACCTTCGAAATGTACTTGGCACTTGGGAGTGAAAACTGAATCTCCACATCAACACGAAAAGACCGCGGTGACAGAGAACAAAGTAATTCCAAATATTCTTCATCGCATTGGAAATACCCCGCTAGTTCGAATAAACAAGATTGGAAAAAGCTGTGGCTTGAAATGTGAATTGTTGGCAAAGTGTGAGTATTTCAACGCAGGAGGTTCAGTGAAGGACAGGATAGGCCTTAGAATGATTGAAGATGCTGAGCGCCAAGGAAAACTCAAACCTGGAGACACTCTCATTGAACCCACATCGGGAAATACTGGAATTGGCCTTGCTTTAGCAGCAGCAGTGAAAGGTTATCGCTGCATTATAGTGATGCCTGAAAAGATGAGTAACGAAAAGGTAGATGTCCTTCGGGCCCTAGGTGCAGAAATAGTGCGTACACCAACAGAAGCCAAGTTTGACTCACCAGAATCACACATTGGTGTTGCTCAACGACTTAACTGTGAGATTCCAAATTCCATCATCTTGGATCAGtATCGAAATGCAAGCAACCCTTTGGCTCATTATGATGGAACAGGTGAAGAAATAGTCCAGCAGTGTGGTGGTAAGGTTGACATGGTGGTACTTGGAGCTGGTACTGGAGGTACAATCACAGGAgtagcaagaaaaataaaagaaaaatgcccTAACGTTAAGaTTGTTGGTGTTGATCCACATGGATCAATCTTAGCTGAACCAGAAGAACTTAATGACTGTGATGACCCAATATATAATGTTGAAGGTATTGGGTATGACTTTGTTCCTACTGTTCTGGACCGTTCAGTTGTTGACAAGTGGTACAAAGTTGGAGACAAAGAAGCATTCACTTTTGCAAGGAGACTCATAAAAGAAGAGGGATTGCTGTGTGGAGGTTCTTGTGGAAGTGCAATGGCAGCTGCAGTGCAGGCAGCCCAGACTCTGCAGGAGGGACAGAAGTGTGTTGTCCTTTTACCTGACTCTGTCAGGAACTACATGACAAAATTCTTAAGTGATGACTGGATGGAAGACAAAGGATTTCTTGAAAAAGAGAGGAATGAAGACCACAGTAAATTTTGGTGgtggacaaagaaaatttcctgtATCGACCTTCCAACTCCTTTGACTGTTTTGCCAACTGTCACCTGTCAACAGTCCATTGACATAATGGACAGAGAAGGTTTTGATCAACTTCCAGTTGTCAACGAATCGGGGTCCGTGATGGGAATGGTAACCCTTGGTAACATAATGTCCCAGATGCTTAGTGGACGAATCACACCTGAAAGCCCCATTATCCACTCtgtttacaaaaactttaaaaagGTTAAACTAGACACTACCCTGGGCCGTTTGTCCCGCATCTTGGATCATGATCACTATGCCGTCGTAGTTCACAGGCAACGACTCTATTCCAACAAAGGAAAACCGGATGAAAAAGAGATGATATTTGGAATTGTGACACGCATTGACTTGTTGAACTTCATTACTCTAAATCAAAATAAGAATGGAGTGAAAAACGGCGAGTTACATTAATTTGGAAGTGGAAGcatagaagaagaaaaaagtctctgattgttattgttaataGTAGTGATATTGTATGTGTGAGATCTCTTTTCTCCCTTCTCGTAGaagattactttaaaaaaaaggatcaagAACTAGACTACAATTTAAGTACTCCTGCTTAACATATCTATATATCAAATCGTTCTGTTTGGAAGGAGTTTAACATAACTCAGTGTAAGGAGCTATATAATGTAAAATTTCCGCACAAAAAGACATACATATGATAGCGAAATAAGGGCGTAATCGGTGAAGTCTAATTTGCTCTAAGTTGAGTATTTTGGTCGTTTGTCGCCCAGTTGAATTTTTCCTGATGTGACATGTTCTTTAACTCAAAGGTCAGTGTTTTGTTAAAACGAAAACTATGACGTTAGGCGTCTCAAAAAGTTTACCTTAATGATTTCTAAAATCTTTATAAAGTTCACACTAACAGCCCGAAAACTATTTAAAATCGAAGTGTCAGTTGACTATTTGAAAGGCGTATTTGTAGGTTTAGTAATATAGTTCAGTCGTTTGTAAATTAGTCTGAACCAAGATTTAAAGTTGCTTTAATTCAACGTAGAGCAATAGCTTTTGAACACAGAGCGAACGTATTTGTTCCTATGTAATAAAGTTAACATATTTATTGTTTGTGAGGGCACACTAAATTTATATTTCAAGCCGTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00291 all species →	PALP	Pyridoxal-phosphate dependent enzyme	Family	Interproscan
PF00571 all species →	CBS	CBS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036052 all species →	Homologous_superfamily	Tryptophan synthase beta chain-like, PALP domain superfamily	Interproscan
IPR001926 all species →	Domain	Tryptophan synthase beta chain-like, PALP domain	Interproscan
IPR046342 all species →	Homologous_superfamily	CBS domain superfamily	Interproscan
IPR005857 all species →	Family	Cystathionine beta-synthase	Interproscan
IPR000644 all species →	Domain	CBS domain	Interproscan
IPR050214 all species →	Family	Cysteine Synthase/Cystathionine Beta-Synthase	Interproscan
IPR046353 all species →	Domain	Cystathionine beta-synthase, C-terminal domain	Interproscan
IPR001216 all species →	Binding_site	Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10314 all species →	CYSTATHIONINE BETA-SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004122 all species →	Molecular Function	cystathionine beta-synthase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019343 all species →	Biological Process	cysteine biosynthetic process via cystathionine	Interproscan
GO:0006535 all species →	Biological Process	cysteine biosynthetic process from serine	Interproscan
GO:0019344 all species →	Biological Process	cysteine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01697	CBS; cystathionine beta-synthase	EC:4.2.1.22	Cysteine and methionine metabolism	ko00270	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.