Gene detail

Detailed information of PFX25118.1 in Stylophora pistillata

Genomic Location: Spis.scaffold159:542598...553757
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis10270_mrna

CGGCTCTTAGGAAATGAGTTTCTGATTAATTGTTTATGTATTTTCTTGGTGATCTCGCCGATATGTTGTCTTTTATGGAAAAGAGAAGATCCTCGGCCAAGTTAGCGGAATGGAGTCCATCAGATTGGCCAGAATCTCTTCTAGAAATGAGGACGATCGACAATCTGCTGCGATGTTCTATTTGCTACGAATTTTTTGACGTAGCTTTGATAATTCCAGAATGTTCCCATAACTATTGCTCACTTTGCATCCGGAGATCCCTCAGTTACGACCCAAAGTGCCCCACTTGTTCTTTGAAAGTCACTCCTctcagtttaaaaaataataggGTGTTGGATGAATTAGTCAAAAGTTTCATCAAAGTCAGAACAAAACTGTTGGAACTAACAACAAGCACTGTGCAAGTCACAAGTGTGCAGTCTGTAGACAAAAAAGGTGGCgagccaaaaaataaaaaaatcatcaacACCTCCCAGACAAACACAAAAAGGAGAAAGGCTCAGTCAAGCTCTCAAAACAGTGCCACCTTTTCAAGCCCAAATACAAAGAGACAGAAACTTGATACAGAGAATGAGCAAGGCTTCATTCCTGTTAAAGTAGCTGAAAATGATGAGGAAGAAAACTCCAGCAGAGAATCAACCCCCGAGGTTGTTGTCATTGAAATGGAAAAACAGGTGCAAGAACCACTGCCATCAGAACCACAGCCAGTGGTAATCAGTGAACACAGACCTGATGAAGGACAACCATCACAGCCACAAGATCCAGAGTTAGCTGAGTGTCCAGTTTGCGGCGACATGATCCAgcacagaaaaataaattctcATCTTGATGCCTGCCTTAAtagaacagaaaagaaaagttctttACGCACTTCAAGCAGGAAAGAATCTAGCAAACCCTCAACTAGTAAATCAAGTAAATGCAAGAGTCCAGTTGATGAAGAGTTTCAAGATTCATCTACTTCTTCAAGTAATGAACTGGGATCCTCTACAACGGAGCAAGAAGTTTCTTCCATTCCCACATCATCCAACGTGACAATTAAAGGCTCTAATGCTTTGATCCGATTGATACAGAAAAGAAAGCCTCTTCCAAAACTTGTGTACAATGTCATGTCAGATAAAGAATTACTAAGAAGATTAAAGGAATGGAATTTGTCAACTAAGGGAAATAGATCAACACTTATCAAAAGACATCAAGAATTTGTAATGCTTTATAATTCACAGTGCGATTCTGAGAGACCCATGACTGCTGCACAAATTGTTAGAGAGGTGGAGAAAAATGAGCTGACAAAGGAGAGAGAGGCAGCATCTGTTGCTGAAGCTTCAACATCtCATAGTattcattttacaaaaaatcaaagtgaaGGAGAGATGGATGAAATTCGACAGGAATACCTGAATCAacataaaaatgaatttgataaGCTAATAGCTGATGTGCAAAAgcgaaagaaagggaaaagtaATTTATCTGCAAAAAGGACTCCAGTCAGTGAAAGGTTGGATGTGTCAGAGACTAACCCCACTGATGAAGACTTGAACAAGAAAGACCAAGGTAACATCGACACAAATGAGCAGGAAATTAATGATAACTCATCAGAATCAAGTGATCAAACATACCCACCTTTCTTTAAGAAGAGCACTGCTCCTCCAGATTCATCAAAAGGCGTCAACAGTAGGACTTGTTCAGTCATTCCTGAGCCTCCATCCTCTCCAAGTCTGGTATCGTTTGAGGAGGATGAGGGTACACCATCACTAGGTTTGGAGGATAATGATTGGGAACTTAAAGATGGTGAGTCAGACGAGCCCCTGGTTATTCCAGAAAGCCCAGTGATAAAAGTTGGATCAAGAGCTACAGATGGAAGAACATACGAGGACACTGTATCAAGTGACAGTGAGGAAGAGTTTCAACAAACATTTGTTAAGAATAAAAAGGTCAAATCTAACCTGTTTTAATTAATGTAGGTTTTGCCTTTAgtgcaaaattttcaagttgaatAATAATTATCCCCGTCTTCTTTGATCAGAAAGGTAACTATCTCAACTGATATCATTGGCAAGTTAAGAGAGATTGATGTTACATGTGTACTCAAATGTTATTTTCTAGTTGATCATTTTTCTAATTCTCGTCACCCTTCTTTTGAAAATGCGTAATTGTAGGGAGAATTTATGCACAAATTAATCTACAGATAGTTTCAAGTATAAAACTCTAGAAATGAATTGTAGAAAATTTTGAAGTCTTTATCAATTCAATTGTGAGagtttctattttaaaattagacATGTCTTGAATACTCTCATCCAAAAGTTATATCCCTACATCTAAAAAATTACTCTAAACTTCCTTCCACTGCCATTTTGGCCATATCCCAACTTTATGATATAAATTTGCAAAAAGAAGTTGGTTCAAAAAGTTTAATTGGTTATTCAAACGTCATCCACTGATAATAAACCtcaaacgttttatttttttcaaagaagcaGTGAAAGTGGATCTCCATAAGCATGATGACATGGGTTGAACTAACAACGTGATTTAATGTAGAAAAATCTGTTTATATCTGATACATAGAGAAGTTGTGTTGCTTCACTCCCCAATCTTAGGTTTGCTTAGTCTGTAAATATCTGTAGAATTATATCCTtctatattatttttaataataatggtGTGATAAGTGAGGCACAGCTAACTATtagtaagaaattattttagtgTAAGGCACCAtcttatttttcattgaaagtaACAGGTTGAATAATTCTGACCCAATGTTTACAGTGATTTGAGTGAAAGAGccctaaaggaaaaaaaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR006642 all species →	Domain	Rad18, zinc finger UBZ4-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003034 all species →	Domain	SAP domain	Interproscan
IPR039577 all species →	Family	E3 ubiquitin-protein ligase Rad18	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14134 all species →	E3 UBIQUITIN-PROTEIN LIGASE RAD18	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006301 all species →	Biological Process	postreplication repair	Interproscan
GO:0006513 all species →	Biological Process	protein monoubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0097505 all species →	Cellular Component	Rad6-Rad18 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10627	RAD18; E3 ubiquitin-protein ligase RAD18	EC:2.3.2.27	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.