Gene detail

Detailed information of PFX25420.1 in Stylophora pistillata

Genomic Location: Spis.scaffold151:132044...161170
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ACTN1

ATGGCGGCTGATGAACCAGAAATTTATGGCTACTACTATGACAATGAAGAAGATAGAGGGTTGCTTGATCCTGCATGGGAGAGACAACAAAAAAAGACGTTTACAGCCTGGTGTAACTCTCATCTGCGAAAAATTAACGTCCAGATTGACGAAATTACCACAGACTTTAGCGACGGCTTGAAACTCATGGCTTTGCTGGAAGTAATATCAGGCGAAAGACTTCCTAAACCCGAGAAAGGACGGCTGCGATTTCATAAAATTTCCAACGTTAATAAAGCTCTAGACTTTGTGGCCAGCAAAGGAGTAAAACTTGTGTCGATTGGAGCTGAAGAAATTGTGGATGGTAACTTAAAGATGATTCTAGGAATGATCTGGACCATAATTCTTCGGTTTGCGATCCAAGACATAGCAGTAGAAGAATTGTCTGCGAAGGACGGCCTGCTGCTTTGGTGTCAGCGTAAAACTGCTCCATATAAAAATGTCAACGTGCAAAACTTTCACACAAGTTTTAAAGATGGCTTGGCTTTTTGTGCTCTTATTCATCGTCATCGGCCGGACCTTATCGACTATAACTCCCTAAGCAAGGAGACCCCTTTGGAAAACTTGAATTATGCCTTTGATGTTGCTGAGAAACATCTGGACATTCCCAAAATGCTTGACGCTGAAGACATGGTGAACACTGTAAAGCCTGATGAAAGAGCTGTGATGACTTATGTCTCATCCTACTACCATGCCTTTACCAGCTCACAAAAGGCTGACACAGCAGCCAAGCGTATTGGTAAGGTTCTCAACATCAACAGAGATAATGAGAAGATGATGGAGGACTATGAAAAAGTTGCCAGTGATCTTCTTGATTGGATCAATAAGACCCTACCCTGGCTTAATGACAGATCAAGTGATGGCACACTGAGTGATATGCAGAAAAAGCTTGATGCTCTTCGTGTGTACCGAAGAAGTGAAAAACCTCCTAGAGTAGAAGAAAAAGGGATGCTGGAGACAAATTTCAACACATTGCAGACCAAACTTCGCCTTGGAAATCGACCTGCATACCTCCCAACAGAAGGGAAAATGATCAGTGACATCAATCGTGCATGGGGAGACTTGGAAGGTTCTGAGAAAGATTTTGAAGACTGGTTGTTGAAGGAAATGAGAAGGATGGAACGACTCGATCACTTAGCCCAAAAGTTCAAACACAAATGCAATATTCATGAAGCTTGGACAAGTGGAAAAACTGACATGTTGAAGAAAAATGATTTTGAAAATGCCTCACTGGCTGAAATTTTGCAAATCTGTGATGAGTGCAAAGACCTTGGACAGTTAACAGAAGATCGACGGAAAAAACTTGAGGACCGTGAAGCAGTACTGGTACAACTGGACAACTTGCTGTTAGAGTTTGCCAAAAGAGCAGCGCCATTCAACAACTGGCTAGAAAGTGCACGCGAAGATTTAATGGACATGTTCAGTGTGCATACTGTGGAGGAGGTTGTGGAACTGCAAGATGCCCATAAGGTCTTCAAGGACAACATGCCAGCTGCAAGAGACGAGTATCATTCTATTATGAAGTTGAGTGACGTAATTGAGGAATTGAGTGATCTGGAAAACCCTTACACCAGCCTTACTAAACAGTCACAAGGTAACGAGAAACTTCGGGTGGAGTTCGCACAAAAGGCGAATCAAATTGGACCGTGGATCAGACGCAACGAAGAAGAGTTACGATCTATTACTTTGACATCCGTTGGACCTTTGGAGGAACAACTGCAAGCAATACAAGGACTTGAAAGAGATGTTACCAGTCACAAGCCTCAAATGGATGAGTTAGAATTGGTTAACCAGGACGTCCAAGAAGCTTTGATCTTTGAGAATCCCCATACAGAATACACCATGGAAGCTCTTCGAGTTAACTGGGAGCAGCTGCTAACTGCAATCGCTAGAAACATCAATGAAGTTGAAAATCAGATTCTAACAAGAGATTCCAAAGGTCTTTCAGAGGAACAGATGAAAGAATTCAGAACTTCATTCAACTTTTTCGACAAGGATGAAAACGCGCGACTTGAGCCGCATGAATTTAGACAGTGTTTGGTCAGTTTAGGACACTCGCTTCCCGAAGGAGATAAGGGTGACGTAGAGTTCAACCGACTCATGACTATTGTAGATCCAAACAACACGGGTTATGTGACTTTCCAAGCATTCCTTGACTTTATGACGCGTGAAGTGGCTGATACGGATACCGCTGAACAAGTCATGGAGTCATTTAGAATCCTTGCTGGGGACAAGCCGTTTATCACTACAGAAGAACTGAGACGTGAATTACCACCAGATCAAGCAGAGTATTGTATCGCTCGAATGGCTCCCTACGAGGGACCAGACGCAGTGCCTGGTGCTCTGGATTACATGTCCTTCTCCACTGCACTCTATGGCGAAAATATAGCAGCTGACTGGTCCGATCATGGTTTATGGTGGCCTCAAAAACGACAATGGCTTCTTAAACCTCGCTTGACTCTTGATACCATCGGAGTTCAGGGCGATGCGGTTCTTCAGTTTACTCCAACGCATAAAAAAGTTCGAGTTCAGTTACCTGACTTGCAGTACGTTGAAGTCTCCTTAGACTTTTCCAAGCCTATTTTTCACGCTGTGCAAGAACTTTGTGCCGAACTTGGAATCAGGCATCCCGAAGAACTCTCTTTGTTGAAACCGTACGAAGGTTTGAGAAAAGAGGGCCGGAGAAGCTTTCGTGGTAAATTAAAGAAAAGGCATTCGCAGTCTTCGCTTAGTTCGGACGACAATTTATCTACTAATAGCGACGACAAAACGAGAGGAAGCAAGGATAGTTTAACAGTTCCGAATTATAATTCGCTTCCCAGGCATGGCTACTCTTCACCGAATGGCACCCTTAGCCCGTCACCACCGGGGTCGGCTGGTTATTCAAGTTTTACGTCTGATGGGCCTTGTGCAACGATCGAATCAACATCTTTAGTTAACAGCCCAGTGTCTCCATCAATGGAAGCTATTGGAGCGTTATTCAAACCCAAAACGCTACAAGAAAAAGCAGTTGTCAACAAAGGATGGATGGACTCTTCACGATCTTTAATGGCACAGGATGTGGCAGAATTTTCCACCCTCCTGTTGAGATATAAGTACTATGCATTTTTTGACTTAAACCCAAAGGTTGATGAAGTGAGAATCAATCAACTGTATGAACAAGCCAAATGGTCAATCCTGACTGAGGAAGTAGAATGTACCGAGGAAGAGATGATGACGTTTGCTGCCATACAGTTTCAGGTGAAGTTAACCTCGACTTCACCACAGAACCAACCAACTAGTGATGATGACAATGATGACATAGATGCAGCACTCAATGATTTACAGGCAACCCTCGAAGGCTCATCTCTCACCACTCAAGGGCACCAAAAGCAGAGTCTGACATCAGTTCCAGAAATAAAAGATTATCTTCATTTGGTGAAACATAAAACATTTGGTTCAAAGAAAAAGAAGTACTGGTTTGTCTTCAAAGACACCATCTTGTCACTGTTTAAATCTCAAGAGGAAGCTTTTGGTCAACCATCTCAAAAATTTAACCTGAGAGGTTGTGAGATCACTCCAGATGTTAATGTTAACAAAGAGAAATTTAACATCAAAATTAAGCTCCAAGAATCAGACGATATTGAAATCTGCTGCTCGTGTGAATCCCAGTATTCCAAATGGATGGCAGCTTGTCGTCTGGCATCCAAGGGGAAGACTATGGCAGATGCTGGGTATGATGCAGAGGTCTCTGGTATCCAGGCCTTCCTCAGCATGCAGCATGAAAAGGGGGATGCCACACCCCTTAGTCCTGGACAAATCGCTGCTCGTATCCTTGAAGCGCATTCTTCTTTGAACAAAAGCTCTCTGGTTGAGTCTAAAATGCTGTATGTAAGACAATGGCAGGCATTGCCAGAATTTGGTCTCTCTCATTTTGTCGTTAAATTCCGCGGCTCAAAGAAAGAGGAAATCCTTGGAATCGCATTTAACAGAATTATGCGAATCGACCCGACGAGCCGTGAAGCGATAAAAACCTGGAGATACAGTGTGATGAAAGCTTGGAACGTGAACTGGGAAACCAGGGAAATGGTTGTTCAGTGTGAAGGGGAGACCATCACATTCGCTTGCACAAGTGCAGACATTAAAGTCATTCACGAATTTATTGGAGGTTACATCTTCATGTCAATGAGAAAAGATGTCAATCAGCCATCAAACGAGGAGCTGTTCTTTAAGCTGACCGGGGGTTGGGTCTAG

Transcript

rna-Spis9914_mrna

ATGGCGGCTGATGAACCAGAAATTTATGGCTACTACTATGACAATGAAGAAGATAGAGGGTTGCTTGATCCTGCATGGGAGAGACAACAAAAAAAGACGTTTACAGCCTGGTGTAACTCTCATCTGCGAAAAATTAACGTCCAGATTGACGAAATTACCACAGACTTTAGCGACGGCTTGAAACTCATGGCTTTGCTGGAAGTAATATCAGGCGAAAGACTTCCTAAACCCGAGAAAGGACGGCTGCGATTTCATAAAATTTCCAACGTTAATAAAGCTCTAGACTTTGTGGCCAGCAAAGGAGTAAAACTTGTGTCGATTGGAGCTGAAGaaattgtgGATGGTAACTTAAAGATGATTCTAGGAATGATCTGGACCATAATTCTTCGGTTTGCGATCCAAGACATAGCAGTAGAAGAATTGTCTGCGAAGGACGGCCTGCTGCTTTGGTGTCAGCGTAAAACTGCTCCATATAAAAATGTCAACGTGCAAAACTTTCACACAAGTTTTAAAGATGGCTTGGCTTTTTGTGCTCTTATTCATCGTCATCGGCCGGACCTTATCGACTATAACTCCCTAAGCAAGGAGACCCCTTTGGAAAACTTGAATTATGCCTTTGATGTTGCTGAGAAACATCTGGACATTCCCAAAATGCTTGACGCTGAAGACATGGTGAACACTGTAAAGCCTGATGAAAGAGCTGTGATGACTTATGTCTCATCCTACTACCATGCCTTTACCAGCTCACAAAAGGCTGACACAGCAGCCAAGCGTATTGGTAAGGTTCTCAACATCAACAGAGATAATGAGAAGATGATGGAGGACTATGAAAAAGTTGCCAGTGATCTTCTTGATTGGATCAATAAGACCCTACCCTGGCTTAATGACAGATCAAGTGATGGCACACTGAGTGATATGCAGaaaaagcTTGATGCTCTTCGTGTGTACCGAAGAAGTGAAAAACCTCCTAGAGTAGAAGAAAAAGGGATGCTGGAGACAAATTTCAACACATTGCAGACCAAACTTCGCCTTGGAAATCGACCTGCATACCTCCCAACAGAAGGGAAAATGATCAGTGACATCAATCGTGCATGGGGAGACTTGGAAGGTTCTGAGAAAGATTTTGAAGACTGGTTGTTGAAGGAAATGAGAAGgatGGAACGACTCGATCACTTAGCCCAAAAGTTCAAACACAAATGCAATATTCATGAAGCTTGGACAAGTGGAAAAACTGACatgttgaagaaaaatgattttgaaaatgcCTCACTGGCTGAAATTTTgCAAATCTGTGATGAGTGCAAAGACCTTGGACAGTTAACAGAAGATCGACGGAAAAAACTTGAGGACCGTGAAGCAGTACTGGTACAACTGGACAACTTGCTGTTAGAGTTTGCCAAAAGAGCAGCGCCATTCAACAACTGGCTAGAAAGTGCACGCGAAGATTTAATGGACATGTTCAGTGTGCATACTGTGGAGGAGGTTGTGGAACTGCAAGATGCCCATAAGGTCTTCAAGGACAACATGCCAGCTGCAAGAGACGAGTATCATTCTATTATGAAGTTGAGTGACGTAATTGAGGAATTGAGTGATCTGGAAAACCCTTACACCAGCCTTACTAAACAGTCACAAGGTAACGAGAAACTTCGGGTGGAGTTCGCACAAAAGGCGAATCAAATTGGACCGTGGATCAGACGCAACGAAGAAGAGTTACGATCTATTACTTTGACATCCGTTGGACCTTTGGAGGAACAACTGCAAGCAATACAAGGACTTGAAAGAGATGTTACCAGTCACAAGCCTCAAATGGATGAGTTAGAATTGGTTAACCAGGACGTCCAAGAAGCTTTGATCTTTGAGAATCCCCATACAGAATACACCATGGAAgcTCTTCGAGTTAACTGGGAGCAGCTGCTAACTGCAATCGCTAGAAACATCAATGAAGTTGAAAATCAGATTCTAACAAGAGATTCCAAAGGTCTTTCAGAGGAACAGATGAAAGAATTCAGAACTTCATTCAACTTTTTCGACAAGGATGAAAACGCGCGACTTGAGCCGCATGAATTTAGACAGTGTTTGGTCAGTTTAGGACACTCGCTTCCCGAAGGAGATAAGGGTGACGTAGAGTTCAACCGACTCATGACTATTGTAGATCCAAACAACACGGGTTATGTGACTTTCCAAGCATTCCTTGACTTTATGACGCGTGAAGTGGCTGATACGGATACCGCTGAACAAGTCATGGAGTCATTTAGAATCCTTGCTGGGGACAAGCCGTTTATCACTACAGAAGAACTGAGACGTGAATTACCACCAGATCAAGCAGAGTATTGTATCGCTCGAATGGCTCCCTACGAGGGACCAGACGCAGTGCCTGGTGCTCTGGATTACATGTCCTTCTCCACTGCACTCTATGGCGAAAATATAGCAGCTGACTGGTCCGATCATGGTTTATGGTGGCCTCAAAAACGACAATGGCTTCTTAAACCTCGCTTGACTCTTGATACCATCGGAGTTCAGGGCGATGCGGTTCTTCAGTTTACTCCAACGCATAAAAAAGTTCGAGTTCAGTTACCTGACTTGCAGTACGTTGAAGTCTCCTTAGACTTTTCCAAGCCTATTTTTCACGCTGTGCAAGAACTTTGTGCCGAACTTGGAATCAGGCATCCCGAAGAACTCTCTTTGTTGAAACCGTACGAAGGTTTGAGAAAAGAGGGCCGGAGAAGCTTTCGtggtaaattaaagaaaaggcATTCGCAGTCTTCGCTTAGTTCGGACGACAATTTATCTACTAATAGCGACGACAAAACGAGAGGAAGCAAGGATAGTTTAACAGTTCCGAATTATAATTCGCTTCCCAGGCATGGCTACTCTTCACCGAATGGCACCCTTAGCCCGTCACCACCGGGGTCGGCTGGTTATTCAAGTTTTACGTCTGATGGGCCTTGTGCAACGATCGAATCAACATCTTTAGTTAACAGCCCAGTGTCTCCATCAATGGAAGCTATTGGAGCGTTATTCAAACCCAAAACGCTACAAGAAAAAGCAGTTGTCAACAAAGGATGGATGGACTCTTCACGATCTTTAATGGCACAGgaTGTGGCAGAATTTTCCACCCTCCTGTTGAGATATAAGTACTATGCATTTTTTGACTTAAACCCAAAGGTTGATGAAGTGAGAATCAATCAACTGTATGAACAAGCCAAATGGTCAATCCTGACTGAGGAAGTAGAATGTACCGAGGAAGAGATGATGACGTTTGCTGCCATACAGTTTCAGGTGAAGTTAACCTCGACTTCACCACAGAACCAACCAACTagtgatgatgacaatgatgacaTAGATGCAGCACTCAATGATTTACAGgcAACCCTCGAAGGCTCATCTCTCACCACTCAAGGGCACCAAAAGCAGAGTCTGACATCAGTTCCAGAAATAAAAGATTATCTTCATTTGGTGAAaCATAAAACATttggttcaaagaaaaagaagtactGGTTTGTCTTCAAAGACACCATCTTGTCACTGTTTAAATCTCAAGAGGAAGCTTTTGGTCAACCATCTCAAAAATTTAACCTGAGAGGTTGTGAGATCACTCCAGATGTTAATGttaacaaagagaaatttaacATCAAAATTAAGCTCCAAGAATCAGACGATATTGAAATCTGCTGCTCGTGTGAATCCCAGTATTCCAAATGGATGGCAGCTTGTCGTCTGGCATCCAAGGGGAAGACTATGGCAGATGCTGGGTATGATGCAGAGGTCTCTGGTATCCAGGCCTTCCTCAGCATGCAGCATGAAAAGGGGGATGCCACACCCCTTAGTCCTGGACAAATCGCTGCTCGTATCCTTGAAGCGCATTCTTCTTTGAACAAAAGCTCTCTGGTTGAGTCTAAAATGCTGTATGTAAGACAATGGCAGGCATTGCCAGAATTTGGTCTCTCTCATTTTGTCGTTAAATTCCGCGGCTCAAAGAAAGAGGAAATCCTTGGAATCGCATTTAACAGAATTATGCGAATCGACCCGACGAGCCGTGAAGCGATAAAAACCTGGAGATACAGTGTGATGAAAGCTTGGAACGTGAACTGGGAAACCAGGGAAATGGTTGTTCAGTGTGAAGGGGAGACCATCACATTCGCTTGCACAAGTGCAGACATTAAAGTCATTCACGAATTTATTGGAGGTTACATCTTCATGTCAATGAGAAAAGATGTCAATCAGCCATCAAACGAGGAGCTGTTCTTTAAGCTGACCGGGGGTTGGGTCTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF18124 all species →	Kindlin_2_N	Kindlin-2 N-terminal domain	Domain	Interproscan
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan
PF08726 all species →	EFhand_Ca_insen	Ca2+ insensitive EF hand	Domain	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR040790 all species →	Domain	Kindlin-2, N-terminal	Interproscan
IPR037843 all species →	Family	Kindlin/fermitin	Interproscan
IPR018159 all species →	Repeat	Spectrin/alpha-actinin	Interproscan
IPR001589 all species →	Conserved_site	Actinin-type actin-binding domain, conserved site	Interproscan
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan
IPR014837 all species →	Domain	EF-hand, Ca insensitive	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16160 all species →	FERMITIN 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005178 all species →	Molecular Function	integrin binding	Interproscan
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0007229 all species →	Biological Process	integrin-mediated signaling pathway	Interproscan
GO:0030055 all species →	Cellular Component	cell-substrate junction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17083	FERMT2, KIND2; kindlin 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.