Gene detail

Detailed information of PFX25471.1 in Stylophora pistillata

Genomic Location: Spis.scaffold150:419975...427912
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10607 all species →	CTLH	CTLH/CRA C-terminal to LisH motif domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045098 all species →	Family	Fyv10 family	Interproscan
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR044063 all species →	Domain	Gid-type RING finger domain	Interproscan
IPR006595 all species →	Domain	CTLH, C-terminal LisH motif	Interproscan
IPR024964 all species →	Domain	CTLH/CRA C-terminal to LisH motif domain	Interproscan
IPR013144 all species →	Domain	CRA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12170 all species →	MACROPHAGE ERYTHROBLAST ATTACHER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0034657 all species →	Cellular Component	GID complex	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18624	MAEA, EMP; macrophage erythroblast attacher	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.