Gene detail

Detailed information of PFX25500.1 in Stylophora pistillata

Genomic Location: Spis.scaffold149:111447...128118
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis9837_mrna

ggaaatttctttttgttcgtGTCCGCTCTGGAAGTAATGTTTTGGTTGAGTTTTGGCTGAATATTTTCGCGGTGATCATGCCATCTCCAGAAGCCAGTGGTGATTTAAGCGATGTAGCTAGCCGGTACATTCATTTACTGCAGCCGATCCGTGATCTGACAAAGAACTGGGACATAGATGTTGCCGCTCAACTAGAGGAATACTTGGCTGAGATCGAAAAGATCAAAATATCTTTTGATGGAGGGAAGACCACCATGAATTTTGCTGAAGCAGCGCTTCTTATCCAAGGATCAGCTTGCATCTACAGCAGGAAGGTGGAATATTTGTACACACTGGTCTATCAAACTTTGGATCTAATAGCAAGTAAAAAGCGTCTGCAACAGGTATCAACAGATGATTCAGTTGAACAAGAGAAAAAGGGTACCAAGGGCCACACTAAAGAGtATCGCTCTTGGGATGACATAAAAGTATCAAAGAATATTGATTTGAAGGAagatgatgatagtgatgaaAGAAAGAGTTCTCTGATTGTGCCAAGGATTCCTTTAGCCCTAATACCTCTCCCAGAGGAAGAAAGGGGAGATGTGCTTCTAAGTCACAATGGTGAAGCCATTGGAAGAAAGAATGACTTTaagATGAACACATGTGTTGTCCATGGTCCAACTGGTACATTGCTTCTAGACTGGACGCATCTTTCACTGATAGATGACTCTTTTAAAGGACTGAAGCCTGCCACTCCATCAGTTATGACAGGTATGGAACCTAGAACTGATGAGCAATCAACTAACTATGGTATTGATGCAGCTGAAAATTATGAAGAATTAGGACTTCCTGATGCTGATGATAATTTTGATCCACCTGAACTGATGGATGATGATGCACTTGATAGCTGTAACAATGCTCCAAATAATTGCAATGAATTTGTTACTGAGGAGACCCAGAATGATCAGGAAGAAAGAAGAGAATTAAGAGCAAGACCTGAAACACAGCAAGTCAAACAAGCACAGCAACTGCCTTTCAAAGATCCCTGGAAAATGTTGGATCCTCACGACCCAGGCACTTCACAAGATAAACCATTTAAGAAAGGTAAACCCTTCAAGAAGCCCTCCTCTTTGGTATCACACcagcagaagaagaaaagaaaacataaagaagataaaaaacaaCCAACCCTTGTTCCCATCAATCAGTTTATATCCCAAGCTTTTTATTCACATGCATCAAAGATGTCCAAAAATAGTCTCAAAATTCCATCATTTCCAGAGTTTGAATACTTGTATTGGGTTGaatacagagaaaaacaaaaacttcaggCCAAGCTGAAGAAGGTTTTGTATCAGGTTGCAACAAAGGAGGAAATTGAGGAATTAAACTCAATAGTAGAAAATGCAGAAGAGAATGAAGATGGGCAAATATATGGTGATGATGGTAATGAAGCTGGATGTGATGCACCAGCTgaatatgatgatgatgatgatgatgatgattttggAGGAGGAGTAGATGAAGGGTTGGACTTTGGCAGTGCTGAAGTTCTGGAGCCGATTGCATTGGAGGAACCTGCAGATGGTGTAGTTATTTCAAGCTATGAAGAAATGGTTAGGAAATATGTGGACAGTTACCTTTTGGAGGCACGTCAACAGTATGCCCAGGAAACAGAGTTGAGTAGAAGAGTCAGAGAATGGGAAGAGAGAATTATGCCAGTATTATCAGAAGAGGAGACACATAGGCCATTCGATATTCACAAGTATGGAAAAGAAATTCTTGACTCATTTAAAGGCAATACTATTCAAGATTTTAGAGAGCTAGCCCATGAAAAGGAACCATTTGAAATATGTAGATTTTTTCTAGCAACATTGCAGCTGGCAAACAACTATAATGTAGAGATCACAGCTGACGGAGTTGGAGAAAGAGCAGTTGACACCATGAGACTTACACTTCTAAAAAGAACACCTGGAAATGTGGCCATAGCTACTTTTGGGGGACGAGCATCTACGTGATACATAATTATAGTTTTAAATTAATTCTTATTTTGTAGCTCTAGTTGAAGTTTAGAGGTGATTATGGAAAACCAGCATGGCTTTGAAATGCTGTTTTCACTAATGAACATAGAACTTGTGTTGTAGATCTGTCTTTATTTGGAATTTATACTTTTAAACATGTTTGAAACTAGTAAATTAGAAATTCATACATAagtgttgtttttaaaaactgttgCTTTGCTCattagttttaatttgttttagaaGCTTTTAATGTTATGTGAAAATAGTAAGATCCCCTCACCTTCTAAGTatgcataattataataacttATGAACAAAGAGAATGGTGGGTTATAGGACTTAACTTACATCAGAAGGCTTTGTCTTTGTGTTTGTCAGACTATGAGCTGTCCCTCTTTCTTGGCAAAGTTAGTCctccaagttaaaaaaaaaaatggtggaaaaATTGATGCAGGCACCCTGTGCAGAACTTTAGGAGCAAGGCACACAAAAAGTACACCaatcattttctacctttgTTGGAGCAACACAGATGTCGAACTCTCTGGTCTAGTCTGTAGTCCCTACTTTTTGTTGTGCATCTCAATCCCAGAGTTCCATGCATCTTGctaacatcaatcaatcaagggtctttgctgaaaaggagggactgcttgtgGTTGGTTGATTTTGAGAGGAGAGTTAAACCTGTCAGTAATCCTTTCATAATTCATATTGTGTATATGTGTACATTGTCTCAAAATTTGATGAGTAGGGTCCACAACAGCAAAAAGTTGTATCATCTAGCCCACACTCATACCATCCCAACGAAAGAATGAATAAACTTACTGTTTAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06278 all species →	CNDH2_N	Condensin II complex subunit CAP-H2 or CNDH2, N-terminal	Family	Interproscan
PF16858 all species →	CNDH2_C	Condensin II complex subunit CAP-H2 or CNDH2, C-terminal wHTH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031739 all species →	Family	Condensin-2 complex subunit H2	Interproscan
IPR009378 all species →	Domain	Condensin II complex subunit H2, N-terminal	Interproscan
IPR031737 all species →	Domain	Condensin-2 complex subunit H2, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14324 all species →	CONDENSIN-2 COMPLEX SUBUNIT H2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000796 all species →	Cellular Component	condensin complex	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010032 all species →	Biological Process	meiotic chromosome condensation	Interproscan
GO:0030261 all species →	Biological Process	chromosome condensation	Interproscan
GO:0051306 all species →	Biological Process	mitotic sister chromatid separation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11490	NCAPH2; condensin-2 complex subunit H2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.