Gene detail

Detailed information of PFX25555.1 in Stylophora pistillata

Genomic Location: Spis.scaffold148:429296...473083
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Lrpprc

ATGGCGGCCCTGTTACGACTCGGGGCTGGGAAAGCATGCCGACTTTTAGCAGCAAACGCTATACGTAACCCTTTGATCTACCAAAGAAGCTCGGAAATTTTACACAAAGAATGTATTCTAAGAGCATGTAGTACCAGATTTGACGCCTTGAGGTACCTAAGCAGTGAAACCACTGCTGGCGAAGCTGTTAAAGAACCGTCTGAGATCGAGAGTCAGCCTACGCGCGGTAAAAAACGATTCCGGTATGAAAAGGCACCGGAAACTAGATACGACCGCGATACAAGAATATTAGGAACGATCATCGTCAAGAAAATTCTACTGAGAACCTTTGAGAATATTCTGCTCAAAGAGGGCAAGCTGACACCGTTACAAGCTTACCAGGCGATACGAAATTGTGGAACGCAGTTATTGTATGAACGACCCGAAAAGAGAGTTGAAGTGGCGCATTACATATGGGACAAAATTATCGAGACAGACATTTCTCAGGATGGTGATAAAGAGAATTTGTTCAAGAGCTTCTTTAGTTGTAAAATGCTAGAGTACATCAAGGATTCCAAAATGCATGTTACAGAGGAAGTGTATTCTGCTCTTGTCACTGCATATGGCCGCACTAGAGACATGGAGAGTGCCAAAGGTGTATTTGACCTCATGAAAGAGAATAATTTGAAGCCAGACACTGACAATTACACTGCACTGCTTTTGGTTCATGCAGAAATTGGAGACGTGGAAGGCATAATGGAGCTTTTAGATACACCCCATATCTTGGATTTTGTTCAAAAAAACCTGAGGGATTTTTTGATAACAGTTTCAACACGAGGGGAGGTGAACACAGCCTTCCTTCTGCTGGGATATATGAAACAACCAACCAATGCCTTTGGTCTAACTACAGCTGAAAACAATGAACGTTTGTTTCTGAGGAACACAATCCTGTCGGGCCAGTCAATCGATACTATCATGATCACCATTCGTGAGCTGGAAAAACTTGGCCTTTTTGAACCAAAGAAACTGTATGAACTTGCTTTGGACAATAGCTACAATGCTAGAAACCCAGCGGCCCAGGATGTCTTTTCTCTGATGGCAAAGCATGGCTTTGAACTGGATGGCAGAGTTTTGAAGTACCTTTTAGATTCGTTCAGTGAATCCAGTGGGAATGACTTAGAGATGGTAGTTGCCTTTACAAAGGATATGCCCTTCACCAGCTATTCAATTACGGTCCTTGCTCAACTTTTCATGATGACTGGAAATTTGGACAAGCTGCAACAGACCATTGAATTAGCTAAGAAAGAGGGTGTCAAAGATAAAGCCCTAATTTGGGGTTTTGAAGAATATCTGCTTTCAAAAGAATTCAGTCCTAAACAAGCAGTGAAGATTGTGGAGGTTCTTGACAAACACATAAACTCTGCACATGAAGGTATTTTTACGAGATTACAGAATGTCGACCCTGATGCGATCAAGGAAAATGCAGAGTTTTTGAAACGTCTTATAGAAGCTGGCCTTTCACATCATCTGCAGCCTCAATGTTATACAGTTATGTTCAAGCAGTTGGTGAACTTCAGACTGTCACAGGACTTTTACGAATTTTTACGAGTGATGAAGGAGCATCAGGTACCACTTAGTTTTCATCAGTACAGGCCGATGTTACAGATGATGTCTATCGATGGTAAAGCAGAGGCGGCACAGTTTTGCTTTGACAAGATTAAGGAAGAAAATGAGCTGGTCGGTCTTGATTACTCTCGGTTGATTGAGGCTTATGGTAGATGTCCCATCAGTGGCATACGGAAAGGATTAGGAGACGAGAAAGGGATACAAAAGGTCAAGGAACTGTACAGTGAAATCTCTTTAAAAGGGATCACGATGACCAAGTTTGCCAGAGGTGTTGTTTACATTGCGTTCCTGAAATCTGGTGAAGTGGAGCAAGCAGAAGATATTAAATTCATTCATGGCGAAGGATTTCCTACATTCATTGTTATGAATGAATTTATGAGAGCATATTCACAACGCGGAGATGTGAAAAAAACGCTTGAGTACTTTGAAATGCTGAAGGAAATTCACGACGAAAGGGGGATGCCAGCATTTGTGTACAATGAACTCATCTTTTGTTACGGACGTCATGATGATGTGGTTTCTCAGATGAAGGTGCTGGCGGAAATGGACGAACTGGGATTAAAAACAGTTCAAAGAACCTTCTCCCCGATTGTACATTCATTTTGCAGGAGGGGTGATATTAAGTCTGCGTTAGAAATCTTCAGACGCGCCAAGGAAGATGGTCCTTTTCTTGGAAAGAGCAGTCTCATAGTGCTGTTAAACACTATGGTCAAATTGGGCCAAACTGAACACTTTGAAAGTGTTTTGGAAGACTGTCGTCACTTTTTTGCGAGAGTAGTTAGAGACCGCGATGATGCCCAAGAAACAATCAAGAAGCTGGTGTTCGCTTGTTTGCATGCCGAAAAGTACGATCTTGCTTTGAAACTCATGCTGGAAAATGACGTGAACCTGGATTCATTCACACTTTCAACTCCTGCAAGGAACGCGGGCTGGAAAGGAGAGGTCCAAGCTGTGTTGAACGCCATAAAATTCATGAAGGAAAATAACGTCGATCCTAAAATGTTGTACCGTGACCTGATCAGAGCCTATGACTTCCACCGTGACTTGGACGCTATCAAGGCAGTGTACAATATGATTGTTGAAGAAGGAATAGAAGTGGGTCCAGCTTTCCATGAGATATATAAGCGTACATTGATCAAATATTCGGAGCGATTATCTCCCGGTGAAGTTCGTCAAATAGCATCAGCCACGCAGGATGAAGTTGATTTGGATGACGAATCCGACTCGTCAAGTGATGAAGAAGTAGCCAACACTCAGGAGTTTGAGAGGGATTCTGTTACAGATGTTGACGAGGTGAAAGGCCCTAAGTGA

Transcript

rna-Spis9822_mrna

ATGGCGGCCCTGTTACGACTCGGGGCTGGGAAAGCATGCCGACTTTTAGCAGCAAACGCTATACGTAACCCTTTGATCTACCAAAGAAGCTCGGAAATTTTACACAAAGAATGTATTCTAAGAGCATGTAGTACCAGATTTGACGCCTTGAGGTACCTAAGCAGTGAAACCACTGCTGGCGAAGCTGTTAAAGAACCGTCTGAGATCGAGAGTCAGCCTACGCGCGGTAAAAAACGATTCCGGTATGAAAAGGCACCGGAAACTAGATACGACCGCGATACAAGAATATTAGGAACGATCATCGTCAAGAAAATTCTACTGAGAACCTTTGAGAATATTCTGCTCAAAGAGGGCAAGCTGACACCGTTACAAGCTTACCAGGCGATACGAAATTGTGGAACGCAGTTATTGTATGAACGACCCGAAAAGAGAGTTGAAGTGGCGCATTACATATGGGACAAAATTATCGAGACAGACATTTCTCAGGATGGtgataaagagaatttgttcaagagcttctttagttgtAAAATGCTAGAGTACATCAAGGATTCCAAAATGCATGTTACAGAGGAAGTGTATTCTGCTCTTGTCACTGCATATGGCCGCACTAGAGACATGGAGAGTGCCAAAGGTGTATTTGACCTCATGAAagAGAATAATTTGAAGCCAGACACTGACAATTACACTGCACTGCTTTTGGTTCATGCAGAAATTGGAGACGTGGAAGGCATAATGGAGCTTTTAGATACACCCCATATCTTGGATTTTGTTCAAAAAAACCTGAGGGATTTTTTGATAACAGTTTCAACACGAGGGGAGGTGAACACAGCCTTCCTTCTGCTGGGATATATGAAACAACCAACCAATGCCTTTGGTCTAACTACAGCTGAAAACAATGAACGTTTGTTTCTGAGGAACACAATCCTGTCGGGCCAGtcAATCGATACTATCATGATCACCATTCGTGAGCTGGAAAAACTTGGCCTTTTTGAACCAAAGAAACTGTATGAACTTGCTTTGGACAATAGCTACAATGCTAGAAACCCAGCGGCCCAGGATGTCTTTTCTCTGATGGCAAAGCATGGCTTTGAACTGGATGGCAGAGTTTTGAAGTACCTTTTAGATTCGTTCAGTGAATCCAGTGGGAATGACTTAGAGATGGTAGTTGCCTTTACAAAGGATATGCCCTTCACCAGCTATTCAATTACGGTCCTTGCTCAACTTTTCATGATGACTGGAAATTTGGACAAGCTGCAACAGACCATTGAATTAGCTAAGAAAGAGGGTGTCAAAGATAAAGCCCTAATTTGGGGTTTTGAAGAATATCTGCTTTCAAAAGAATTCAGTCCTAAACAAGCAGTGAAGATTGTGGAGGTTCTTGACAAACACATAAACTCTGCACATGAAGGTATTTTTACGAGATTACAGAATGTCGACCCTGATGCGATCAAGGAAAATGCAGAGTTTTTGAAACGTCTTATAGAAGCTGGCCTTTCACATCATCTGCAGCCTCAATGTTATACAGTTATGTTCAAGCAGTTGGTGAACTTCAGACTGTCACAGGACTTTTACGAATTTTTACGAGTGATGAAGGAGCATCAGGTACCACTTAGTTTTCATCAGTACAGGCCGATGTTACAGATGATGTCTATCGATGGTAAAGCAGAGGCGGCACAGTTTTGCTTTGACAAGATTAAGGAAGAAAATGAGCTGGTCGGTCTTGATTACTCTCGGTTGATTGAGGCTTATGGTAGATGTCCCATCAGTGGCATACGGAAAGGATTAGGAGACGAGAAAGGGATACAAAAGGTCAAGGAACTGTACAGTGAAATCTCTTTAAAAGGGATCACGATGACCAAGTTTGCCAGAGGTGTTGTTTACATTGCGTTCCTGAAATCTGGTGAAGTGGAGCAAGCAGAAGATATTAAATTCATTCATGGCGAAGGATTTCCTACATTCATTGTTATGAATGAATTTATGAGAGCATATTCACAACGCGGAGATGTGAAAAAAACGCTTGAGTACTTTGAAATGCTGAAGGAAATTCACGACGAAAGGGGGATGCCAGCATTTGTGTACAATGAACTCATCTTTTGTTACGGACGTCATGATGATGTGGTTTCTCAGATGAAGGTGCTGGCGGAAATGGACGAACTGGGATTAAAAACAGTTCAAAGAACCTTCTCCCCGATTGTACATTCATTTTGCAGGAGGGGTGATATTAAGTCTGCGTTAGAAATCTTCAGACGCGCCAAGGAAGATGGTCCTTTTCTTGGAAAGAGCAGTCTCATAGTGCTGTTAAACACTATGGTCAAATTGGGCCAAACTGAACACTTTGAAAGTGTTTTGGAAGACTGTCGTCACTTTTTTGCGAGAGTAGTTAGAGACCGCGATGATGCCCAAGAAACAATCAAGAAGCTGGTGTTCGCTTGTTTGCATGCCGAAAAGTACGATCTTGCTTTGAAACTCATGCTGGAAAATGACGTGAACCTGGATTCATTCACACTTTCAACTCCTGCAAGGAACGCGGGCTGGAAAGGAGAGGTCCAAGCTGTGTTGAACGCCATAAAATTCATGAAGGAAAATAACGTCGATCCTAAAATGTTGTACCGTGACCTGATCAGAGCCTATGACTTCCACCGTGACTTGGACGCTATCAAGGCAGTGTACAATATGATTGTTGAAGAAGGAATAGAAGTGGGTCCAGCTTTCCATGAGATATATAAGCGTACATTGATCAAATATTCGGAGCGATTATCTCCCGGTGAAGTTCGTCAAATAGCATCAGCCACGCAGGATGAAGTTGATTTGGATGACGAATCCGACTCGTCAAGTGATGAAGAAGTAGCCAACACTCAGGAGTTTGAGAGggattctGTTACAGATGTTGACGAGgtgaaagGCCCTAAGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01535 all species →	PPR	PPR repeat	Repeat	Interproscan
PF13812 all species →	PPR_3	Pentatricopeptide repeat domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan
IPR051114 all species →	Family	Mitochondrial RNA Processing CCM1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47934 all species →	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17964	LRPPRC; leucine-rich PPR motif-containing protein, mitochondrial	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.