Gene detail

Detailed information of PFX25598.1 in Stylophora pistillata

Genomic Location: Spis.scaffold147:59894...66750
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis9759_mrna

attttgggTTAGTAACATTATTTCGCTGTGTGGTGTAAAATTCTGCAGATCTAAAATGCATCCTGATCGGGCAAACGTCCCTCTGTacatttgttgttttattttgttactgAATCAAGTGCTCCCCTCGGAAATGGAAAACTCTGGAGCAAGTTTTTCTTGGGATCCTCGTGGTTACGTATTTTACTGTCCCTGTATGGGAAGATTTGGAAACCAGGCTGAACATTTTCTGGGAGCTTTAGCATTTGCAAAAGCCCTTGACAGAACGTTAATTCTTCCACCTTGGAGAACATACAAAAATGTACCTTTTTCTGACTTTTTCCAAGTGCAACCTCTTCAAACCTATCATAGGGTTATTTTAGCGGAGGATTTTATGAAGCATCTAGCTCCCACTCACTGGCCCAAAGGAATAAGGCGTGGTTACTGCTGGTTACCCCCTGGGTCTGATAGGAAATGTATTATGAAGGAGGGTAATCCATTCAAACCGTTCTGGGATGAACTGGAAGTGGACTTTGATGAGAAAATTGTCTACCATCTTGGAATTCATATACAAGATCCTTATGAGAGGGATCAATGGCAAAGGAAATTCCCATCATCAAGCCATCCAGTTCTTGCATTTAGAGGTGCCCCTGCTAGTTTTCCAGTTGAAGAACAGAATCGGCAGGCACACGCTTTTTTGAAGTGGTCACAGAAGATCAACAGTGAAGTGGATGAGTACATCAGCAACACTTTGCCTAAAGGGCCATTTGTTGGTATTCATCTGCGAAATGGAATTGACTGGAGAAATGCTTGTGATCATGCGGAAGGCATGCCTCAATACATGGCATCACCACAGTGTCTGGGGTACTCACGATACAGAACTGTTACAAAGGAGCTTTGTTTTCCACCCAAGCAAGACATCCTTAACCGCACTGAAACCGCTGTAAGAAGATTTGGTGCCAAGGCTGTATTTGTGGCCACTGATAATGATCCAATGAAAGAGGAATTGAAATTCAGGCTACAGGGGCTGAACGTGCAGATTTTCCATATCAATCCTTGGTTACCGCAGATAGACCTTGCCATTCTTGGTAGAGCTGACTTTTTCATTGGAAACTGcgtgtcttctttttcttcatttgtgaAACGGGAAAGAGACTCTAATGGAAAACCTTCTACATTCTGGGCTTTTGATGagtgaaaaaaatcagtgtaGCAGTACACCAGCACAGGTGCAGTATCATAGCTCCGTCAGCCGCATTGACTGAAAGCAACTTCACCGAAATGCAGTAGGATTTCTCATGATTCCCTCATATGGACGTACTTATTGTACATGCGCAGCACAGAGCACGGCAAATAGAGTTCGACAGCGATCTGAGGCCAGGTACCTAGGATTCAAGGCTTATGTCGCAGAACATAGTAATGGCCTGTGCCCAATAGTCTATTAGGAATGCATTTGAAACACGGAAACAGGTGACAGGTCTGAATCATGAAAAGATGTTATGGGACACGTGGACGTACCGTGTGTAGCATTTTAACTTTAGCCACAAGTTACCATCAGAGCGGGAGTGTGCCCATGGTTTGATGTTAAAATGAACAATGTAGGTCATACGAGATTAATCATTGGATAGGTACTTAAAGCTGTCGGGTTACCTTGTAAAACAAGACCAAGGGCCATCATAACTTAAACCTTTAATGCGGGAAAGCGCGGTTAAAGAAGTCGCCATTGAATTCaattttgtatctgattggttgacagggTGGCGTGAGCATTCTATACCAATCAAAGAGTCTAGTAAGGAAACGGTTGGTCTTAATAAAGTGTGTAGAGAGTGTCTGAGGTTTGGGGCCTATAAGGGGATAAGTGTCGAACCCCTGAAAGACAGATTTTAAAAGGAATTACAGTAAacgaaaataataaattgaactggaaataaaatattgataaataaaataaaaagaggatTAGCTTATTGTCACCTCGTAACATAAAATTAGAGCAGAGACAACGAAATTAGAGAAGCACACATCACTTTCAAAGCGAAGACATGACATcatttttttaccctttaacACActcattgaaataaaatgttttc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10250 all species →	O-FucT	GDP-fucose protein O-fucosyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039922 all species →	Family	GDP-fucose protein O-fucosyltransferase 1	Interproscan
IPR019378 all species →	Family	GDP-fucose protein O-fucosyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21420 all species →	GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0036066 all species →	Biological Process	protein O-linked fucosylation	Interproscan
GO:0046922 all species →	Molecular Function	peptide-O-fucosyltransferase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0008593 all species →	Biological Process	regulation of Notch signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03691	POFUT; peptide-O-fucosyltransferase	EC:2.4.1.221	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.