Gene detail

Detailed information of PFX25628.1 in Stylophora pistillata

Genomic Location: Spis.scaffold146:189081...196923
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis9719_mrna

GTCAGGTCTCTTCCTTTATATCGACCTTTTTCGTCGGTTTCTTCCGGTTCTCtttgaaattgtgtttttgAAACCTTTCCGCGTCCTCATCTTGACATTGTTTTTGAAGATCTGGAAGACTGTGTTTCTGAGGAGGTGGACAGCTGAGTATTAACCAAATATCTAATCGAAAGAAATAGTTACCATGAACCCAGCGACTCAGAATGGGAGTCATGTTAATGATTTGGACGGcgataaaaaagagagaagggTTTATAAAGTTGCTTTGACTGGAGGTCCCTGTGCAGGGAAAACAACTGTTCAAGCAATGATGtcaactttctttgaaaatctTGGATGGAAGGTATACAGAGTTCCTGAAGCAGCCACTATATTGCTGGgTGGTGGTGTGAAGTTTCCAGATCTTAGTGAGCAAGAAGtgtacaattttcaggaaaatttaATGAGGACTTTGCTACAGCTGGAGCAGACATTCTTTGACCTTGCTTCCACTAGCAAGAAGGACACAATAGTGATTTGTGACCGAGGGGCTATGGATCCTTCATCATATATGAGTTCAGAGCAGTGGGATAAACTTCTTGAAAATAATGGTTGGAACAATGTGTCATTACGAGATGCACGCTACGATCAAGTGATTCATTTGGTATCAGCAGCTCAAGGAGCAGAAGATTTTTACACATTAGCAAACAACAACACACGAAAGGAACCAATTGAACAGGCCAGGAAATTGGACAGACTAACCCAACAGGCTTGGGTCGGTCACCCATATGTTGACGTGATTGAAAACAATATAGACTTCAGTAAAAAAGTGCGGCGGGCCATTGATGCTGTCTGTTTCAGAATGCGTATAGATACTGGAGATCGTCTGTCTCCAGAGAGTGTAAAACGCAAGTTCCTTGTTACATCTCTACCAGATGTCAAGGCTTTTCCTGTGTTTCAAGACTTTGATGTGGTTCATAACTACCTTTCCACTTCAAATCCAGAAAGACAAGCTCGTCTGAGAAGAAGAGGACAGAATGGTCATTTTACGTACATGCATACATTACGACTAGAAACCAAGGTCAGCAGCCAAATCGTGGAAGTCAGAACAAATTTATCTGCCAGAGATTATGAGATATTATTTTCTCAAGTTGATCATACTCGGCAATCTGTTTATAAGACTAGAAGATGCTTTTTATGGGGAAACCAGTACTTTCAACTTGATATCTACAATGAACCTTGTCATCCAAGGTGTAAAGGTCTCCTTATCCTCGAAACTTACACCACAATAAAACAAGGTGACTTGGAGTTACCAGATTTCCTGGATATTGCCAAGGAAGTCACAGGGGACCCAAGCTACTCCATGTTCCATTTAGCTTTAAAAGAATAGTCATTGTCAGACTACACACAAGTAAACAGAAGTACATATACgttacaaaattttcacttgCACATACAAAGAATGACTAATTTTTAAATGACACTGAATAGGTGTTACTCTGACCAGAGCTGTGAAAGATTAGACTTATTGAGAACTACAAAGCGACTACAGAAGAGCAAAAATACAAGTTTTAATATATATGTGACaatgtatattttaattttttggcatAGTTTAACCCTCTTGGTGTGGGTTTAGTTTAATGCAGTCAATTTCTATAACTGTAAAATCATTTAGTTGTCAATTGTGTGGCACAGTGTTGATGTCAAGGTGTGAAAATTAATTGAGGTAGTCTCTGTCCATACTCTCTATGAAtgtaaaaactttttcaaaaatccAATAACTGTGCAAATCCTACCCAAGCCTCAAAGGTGCAGTAAATTTATAAGACTTGTAGACATTTTCTtttgcagccattttttaaacacTGAAGTAATTTAACCCAATTTAACTTCAAATGCTATTTATTAATTCCATTTCAGTGTGAAGAGTAACTACTTAATAAAATGGTGCTTCAATTAGATGTTATAAATGGCTATGAACTCAGACACCAATGCTCTCTCTCGACCCCAAACAACTCCGTCCCTGCTTTTAGAACTTTGCAATGTTTTAGTTGATATCAATTTATGTCAGCAGAAAGGATTTggtattaataaataaattgtgttgGTGCTACATAACTGAAAATGATGCTATGACAGTAATTAATCCACACAGATTTTTGGTAAAATTGGGGTAGAAATGGATGACAATAgtacttgtgttttttttaagaatgtttGTAATGCTTCTAATATTTATAATACACCTAcaactctttaattttttttt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13521 all species →	AAA_28	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR033469 all species →	Homologous_superfamily	CYTH-like domain superfamily	Interproscan
IPR053227 all species →	Family	TRPL channel trafficking regulator	Interproscan
IPR038727 all species →	Domain	NadR/Ttd14, AAA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34932 all species →	TRPL TRANSLOCATION DEFECT PROTEIN 14	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0070300 all species →	Molecular Function	phosphatidic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX25628.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.