Gene detail

Detailed information of PFX25704.1 in Stylophora pistillata

Genomic Location: Spis.scaffold144:175011...190033
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Gpam

ATGGATCCTAAGTTGGAAGAAGTATTTAAGAAGTGGGAAGCCCATAGTTCTGGTCCTTCTCGAGCAGCAAATGATGAAGAATCACAGCGTCAGAGGGAAGAAAGGCAAAGAAAATTCCGTGATAATTTGGAAGCACCGTTCCGAAAGCCCTCAAGACAAAGGCCAAGAAAACGTAAATCGAAGCGAGAAGATTTCAGTTTCAAGCCACTAACAGAAGTAAAGTTCAGTGTGCCTCATGCAGTCATACCCTCCATGTACAAAAGAAAGCGGCCATTGATGGGAGAAGCTTGTGACAGATGTTGCAGAGAGAGTAAGATACTCTATGAGGAAGGGAAAGTTTCATGGGGTATACGCAATGTTCTTAGCATGGACCTTTTTAGAAAACAGAATTTCTTAAAAAGAAGTTTCTGCCATATTGCTTTTGTGTGGAACTGTGACATCAGTCATCAATATCCTGATGTGAAGAAGGATGTTTTACATTCAGCCAGAGTGAAAACCTCCATTCTCTCTCCTGCTATGCAAGAGCCTCCATCATCAGGTCAGGACATCAAAACTGTAGAAAATGAAAGATGGAAGAGAATCAATACTGCTGAAAAAAAGGCAGTTAATATTCTGAATGGGATGGCTGCAGTGGTTTACAGGAAGTTTGTAAGGTTCACCACTTGGTTTCTTTTCAAACTATTCAAAAGATTGTTATTCAGTATACAAATTCAAAGAGGACAAATTGACATCTTGAAAGAAGCTTCTCAGGATGACAAACCTCTTGTGTTCCTACCACTTCATAAAAGCCACATGGATTATATTCTACTGACGTTTGTGCTTGTTACATGTGATATTAAGGTTCCTCATGTGGCAGCAGGAGATAACTTGAACATACCATTTTTGGGGTGGATTTTAAGACATTTAGGTGGATTCTTTATCAAGCGTAAACTGGATCATTCCTCTGGGAAAGATGAGTTGTACAAGTGTATCCTTCAAGAGTATGTGGAGCAGCTTCTTCAGAATGGACAGTACCTTGTATTTTATATAGAGGGTAGTAGGTCAAGAAGTGGAAAAGCCATGGTTCCAAAGTCTGGTCTTCTCTCTCTGGTTGTCAACTCAGTCACAGAAGGTGTAGTACCAGATGTGAATGTTGTTCCAGTAAATATCTCTTATGAGAAGGTTGTGGATTCAGGTTACACTAGGGAACTCCTGGGTGAGTTAAAGACGCCAGAGTCATTCTGGAGCACACTGAAAAGCATCTGGCACGTCATCGGAACAAGATATGGCAATGTCAGGCTTGACTTCGGCCAGCCATTTTCTCTCCAGGAATTCTCCCAAGCCATGGACCAATCTCAGCCAATGCAGGAATTTGCTGCAAAATCGTTAGCTAGAGCATCCGATATCTCGTCACCCAAGTCTTCTCTTGTGCGGAACCACTCTGAGGTCTCGCTAAGTGAGTTAGGTGATGATAAGTGTTTCACCCTCACCAAGGCTCTTGGATATCACGCCATTCGTGATTCCGCGAACTGCAGTGCAGTTATGAGTACCAACATGGTCGCCTTCCTTCTCATGAACAGTCATAGGAAGGGTGCCACATTTCAAGAACTGTGTACGTCCTTTGACTGGTTGTATAGGGAAATAACCTCACGAGGAAGAGATGTCGGCTTTTCTGGGAAGACTGCAGCCGTTGTCAGTCATGCACTGCGACTTTTGGACGATGACGTGACATCAACGGAATCGCGGACAGGTCCTCAGAAGGATACAGTGGAACAAGTTCAACCCAAGAATGGTTTGCCTCATATTCTGAATCTGGCATTTTACAGTAATCAGGTTGTTTCAGTATTTTCCCTGGACGCTGTTCTTGCTTGTGCTATTATCGCCGCCGCAGAGGACAGTGAATCCTTTGACATAAACGACATCGAAGGACAGAAGATAATCACCCAGACATCGATAGTAGGAAAGGCGAAACATTTGTGCGATGTTCTTCAGAGAGAGTTCATATTAATTCCGCCATGTGTGTCCCTAGAGTCTGCTCTGACAGAGGGACTGGACAAATTTACATCCAGTGAGACCATAAAGATCATAGCAGAGAGCAACTCCACCAGTTCTCGAGGCAGTCAATGGGGATGGGATGACGACGATGAGTACATGCGAGAATTTGACGTCACGGAGATCGAGTACAAGCTAACCAATGTAGATGAGCTACTGAAGAAGCTGAAGTTTCTTAAGTCAGTGGTTGCTCCGTTGATAGAATCATACTGGGTAGCAGCCTGTGGTTTACTTTGGCTCAGAAACCAGACGTTTTCAGATACTGAGTTTCTGACTGCTCTTCATTCCTGTGCCAAAGAACGAGTCAATGAAGGAGTAACAATGTTTCCCGAGAGTTGTTCACTAGAACCTTTCCGTAATGCGGTGCGCATCTTCAAGGAATGGAAAGTGATACAAGTCAACGCCGAGAGCAGGGTGGCACTCTGTGACGCTTACAACAGTGAGGACGCCCTTTTTGATGTGATTGAAGACATCAATCAGTTTAAACTTTAA

Transcript

rna-Spis9640_mrna

CACGTGTACTACTTCATCCATTCAAAATTGTTGTGAATTTTATCGTGtcaaacaaaaagtaatttttattagTACATCTCGGACATTGTGAACATGATCCTTTGCCTGTTATCAATGTAAATCACAGTTCGCCCTCTTGAAACCTATGGATCCTAAGTTGGAAGAAGTATTTAAGAAGTGGGAAGCCCATAGTTCTGGTCCTTCTCGAGCAGCAAATGATGAAGAATCACAGCGTCAGAGGgaagaaaggcaaagaaaattCCGTGATAATTTGGAAGCACCGTTCCGAAAGCCCTCAAGACAAAGGCCAAGAAAACGTAAATCGAAGCGAGAAGATTTCAGTTTCAAGCCACTAACAGAAGTAAAGTTCAGTGTGCCTCATGCAGTCATACCCTCCATGTACAAAAGAAAGCGGCCATTGATGGGAGAAGCTTGTGACAGATGTTGCAGAGAGAGTAAGATACTCTATGAGGAAGGGAAAGTTTCATGGGGTATACGCAATGTTCTTAGCATGGACCTTTTTAGAAAACAGAATTTCTTAAAAAGAAGTTTCTGCCATATTGCTTTTGTGTGGAACTGTGACATCAGTCATCAATATCCTGATGTGAAGAAGGATGTTTTACATTCAGCCAGaGTGAAAACCTCCATTCTCTCTCCTGCTATGCAAGAGCCTCCATCATCAGGTCAGGACATCAAAACTGTAGAAAATGAAAGATGGAAGAGAATCAATACTGCTGAAAAAAAGGCAGTTAATATTCTGAATGGGATGGCTGCAGTGGTTTACAGGAAGTTTGTAAGGTTCACCACTTGGTTTCTTTTCAAACTATTCAAAAGATTGTTATTCAGTATACAAATTCAAAGAGGACAAATTGACATCTTGAAAGAAGCTTCTCAGGATGACAAACCTCTTGTGTTCCTACCACTTCATAAAAGCCACATGGATTATATTCTACTGACGTTTGTGCTTGTTACATGTGATATTAAGGTTCCTCATGTGGCAGCAGGAGATAACTTGAACATACCATTTTTGGGGTGGATTTTAAGACATTTAGGTGGATTCTTTATCAAGCGTAAACTGGATCATTCCTCTGGGAAAGATGAGTTGTACAAGTGTATCCTTCAAGAGTATGTGGAGCAGCTTCTTCAGAATGGACAGTACCTTGTATTTTATATAGAGGGTAGTAGGTCAAGAAGTGGAAAAGCCATGGTTCCAAAGTCTGGTCTTCTCTCTCTGGTTGTCAACTCAGTCACAGAAGGTGTAGTACCAGATGTGAATGTTGTTCCAGTAAATATCTCTTATGAGAAGGTTGTGGATTCAGGTTACACTAGGGAACTCCTGGGTGAGTTAAAGACGCCAGAGTCATTCTGGAGCACACTGAAAAGCATCTGGCACGTCATCGGAACAAGATATGGCAATGTCAGGCTTGACTTCGGCCAGCCATTTTCTCTCCAGGAATTCTCCCAAGCCATGGACCAATCTCAGCCAATGCAGGAATTTGCTGCAAAATCGTTAGCTAGAGCATCCGATATCTCGTCACCCAAGTCTTCTCTTGTGCGGAACCACTCTGAGGTCTCGCTAAGTGAGTTAGGTGATGATAAGTGTTTCACCCTCACCAAGGCTCTTGGATATCACGCCATTCGTGATTCCGCGAACTGCAGTGCAGTTATGAGTACCAACATGGTCGCCTTCCTTCTCATGAACAGTCATAGGAAGGGTGCCACATTTCAAGAACTGTGTACGTCCTTTGACTGGTTGTATAGGGAAATAACCTCACGAGGAAGAGATGTCGGCTTTTCTGGGAAGACTGCAGCCGTTGTCAGTCATGCACTGCGACTTTTGGACGATGACGTGACATCAACGGAATCGCGGACAGGTCCTCAGAAGGATACAGTGGAACAAGTTCAACCCAAGAATGGTTTGCCTCATATTCTGAATCTGGCATTTTACAGTAATCAGGTTGTTTCAGTATTTTCCCTGGACGCTGTTCTTGCTTGTGCTATTATCGCCGCCGCAGAGGACAGTGAATCCTTTGACATAAACGACATCGAAGGACAGAAGATAATCACCCAGACATCGATAGTAGGAAAGGCGAAACATTTGTGCGATGTTCTTCAGAGAGAGTTCATATTAATTCCGCCATGTGTGTCCCTAGAGTCTGCTCTGACAGAGGGACTGGACAAATTTACATCCAGTGAGACCATAAAGATCATAGCAGAGAGCAACTCCACCAGTTCTCGAGGCAGTCAATGGGGATGGGATGACGACGATGAGTACATGCGAGAATTTGACGTCACGGAGATCGAGTACAAGCTAACCAATGTAGATGAGCTACTGAAGAAGCTGAAGTTTCTTAAGTCAGTGGTTGCTCCGTTGATAGAATCATACTGGGTAGCAGCCTGTGGTTTACTTTGGCTCAGAAACCAGACGTTTTCAGATACTGAGTTTCTGACTGCTCTTCATTCCTGTGCCAAAGAACGAGTCAATGAAGGAGTAACAATGTTTCCCGAGAGTTGTTCACTAGAACCTTTCCGTAATGCGGTGCGCATCTTCAAGGAATGGAAAGTGATACAAGTCAACGCCGAGAGCAGGGTGGCACTCTGTGACGCTTACAACAGTGAGGACGCCCTTTTTGATGTGATTGAAGACATCAATCAGTTTAAACTTTAACTGccaaaagaactttaaaatgttttgaaaacttgaataaatttaccATGCCAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19277 all species →	GPAT_C	Glycerol-3-phosphate acyltransferase C-terminal region	Family	Interproscan
PF01553 all species →	Acyltransferase	Acyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002123 all species →	Domain	Phospholipid/glycerol acyltransferase	Interproscan
IPR041728 all species →	Domain	GPAT/DHAPAT, acyltransferase domain	Interproscan
IPR045520 all species →	Domain	GPAT/DHAPAT, C-terminal domain	Interproscan
IPR022284 all species →	Family	Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12563 all species →	GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0004366 all species →	Molecular Function	glycerol-3-phosphate O-acyltransferase activity	Interproscan
GO:0006072 all species →	Biological Process	glycerol-3-phosphate metabolic process	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0008374 all species →	Molecular Function	O-acyltransferase activity	Interproscan
GO:0008654 all species →	Biological Process	phospholipid biosynthetic process	Interproscan
GO:0019432 all species →	Biological Process	triglyceride biosynthetic process	Interproscan
GO:0031966 all species →	Cellular Component	mitochondrial membrane	Interproscan
GO:0044255 all species →	Biological Process	obsolete cellular lipid metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00629	GPAT1_2; glycerol-3-phosphate O-acyltransferase 1/2	EC:2.3.1.15	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.