Gene detail

Detailed information of PFX25725.1 in Stylophora pistillata

Genomic Location: Spis.scaffold144:398676...426078
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

SRP72

ATGGCGTCTACGTCGCCTAGTATCCCTCAGCTTTTTACAGAATTGGACAAGTTTGCAAAGGACGGAAACTACGCTAAGGCGCAGAAAATTGCTAATAAGATTCTCCAAGAAAAGCCTGACGACAAAGAAGCATTTCACTGTAAAGTTATTTGTCTTATCCATCAGTCATGCTTTCGTGAAGCAGTGGATGTCATTAAATCAGCCCCAAACAAAGGGATAGACATCGAACTTCGTTTTGAGAAGGCTTACTGTCTGTATCGTCTCAACAAAACTCAAGAGGCTCTAGATATTCTCAATGCCATTGCTGAACCAACACAAGCTGAGAAGGAACTGAAAGCTCAAATGCTATATAGGCTTGAGGATTACAGGACCTGTTTGGATCTCTATAAAGATTTAATCAAGAATTCTCAGGATGAGTATGGGGATGAAAGAGAAGCTAACCTTGCTGCTGTTATTGCTGCTGCATCACAGTGGGGAGGACTACAAATGGAAGTCCCAGGTTTGAGAGAAGACACATATGAGCTTTGTTACAATGCAGCATGCCTTTCTCTGGGTCAGAATGATGTAGAAACTGCTCAACAAAAGCTCAAAAGGGCAGAAGAGCTATGTCAAAAAAGCCTTGAAGATGACCCTGATATAGGCGAGGAAGAGATTGAATCTGAAATGGGAGTTGTCAGGACCCAGCTTGCATATGCTTATCAACTCCAGGGGAGGAATGATGATGCACAGAAATTGTACAACCAAGTTCTTAAATCAAAGCCTGATGACCTTGCCCTAGCAGCTGTTGCCTCCAATAACATCATCACTCTCAACAGGGACCGAGATGTGTTTGACTCAAAGAAGAAAGTTAAATCAATGACTGCAGATGGACTGGAACACAAATCAACTGCATCACAGCAGCAGACAATGGCATTTAACAGATGCCTCTTGCTCTTTCACACAAATCAGCTTGAAGCTTGTCGCAACCTGATATCTACCTTGGAAACAAAATACCCTGAAAGTGATTTTCCTTGTCTGATGAGAGCATCACTTCTGCATAGAGAGAAACATTCTGATAAAGCTATAGAACTGCTCAAGAACTACGCGGACTCCCATGACGACACTGCTACAAATGTGAAACTTACATTAGTGCAGCTCTATCTGGCGCAAGGAAACATTCCCACTGCTTGTACAACGCTACGCTCAATAAAAGACTTGGCTTATAAACCAGGCGTGGTGTCTGCCCTGGTGACGATGTATTCTCATCTTGGGGACGTCACGTCTGCTGTTGGTGTCCTTGATGGTGCTGTTGAGCATGCTCAGAAGAACAAGGAGTTCATGAGACAGTCTGAGGTTTTGTCGTTGATGAGAGAGAATGTGGCATATAAACTGCAACATGGTAAAGCTAAAGAGGCGGTGGACATGCTGGAGAAATTGCATAAGGAGGATCCCCGCGACGTGAAGACGTTAGCTCAGCTTATCAAAGCTTATTCTCGGCTGAATCCTCAGAAGGCAGAGCACTACAGTGAAAAACTCAAACCGCTGGACACAGAGGCACAGAGTACATCTATAAACGTGGAGGAGTTGGAGATGTCGCTGAGTACCATGGGATCTCGATATAGTCGGGCAAGAATGAAACAAGAGGGTGGTGATACAGAAATGGCGGATTTGACGAAGGAAAGTTTTGTGAAAAGAAGGAAGAAAAAGCGAAAGAGAGGTAAACTACCGAAAAACTACAACAGCGAGGTCGATCCGGACCCTGAACGCTGGATACCGAAAAGAGAACGGACGTATTACAAGGGTAAAAGACAGAAGAAGGGTGCTTCAGTTGGTAAAGGAACACAAGGTGCTGCAGCTCCTTCAGACGCTTCATCTAGTCCTAAAACACACGGAAGTCCCAAGCCCGCTTCTCCTCCTGGGACACCATCTGCGGCGGGTAATACCGCGAATGTAGTGCCGCCCCGGCAACAGCAGCCCCAGGCTGCCAAGAAGAAACAGCGAACCAAGAAAAAGAAAGGAGGCTGGTAA

Transcript

rna-Spis9651_mrna

GCCAACATGGCGTCTACGTCGCCTAGTATCCCTCAGCTTTTTACAGAATTGGACAAGTTTGCAAAGGACGGAAACTACGCTAAGGCGCAGAAAATTGCTAATAAGATTCTCCAAGAAAAGCCTGACGACAAAGAAGCATTTCACTGTAAAGTTATTTGTCTTATCCATCAGTCATGCTTTCGTGAAGCAGTGGATGTCATTAAATCAGCCCCAAACAAAGGGATAGACATCGAACTTCGTTTTGAGAAGGCTTACTGTCTGTATCGTCTCAACAAAACTCAAGAGGCTCTAGATATTCTCAATGCCATTGCTGAACCAACACAAGCTGAGAAGGAACTGAAAGCTCAAATGCTATATAGGCTTGAGGATTACAGGACCTGTTTGGATCTCTATAAAGATTTAATCAAGAATTCTCAGGATGAGTATGGGGATGAAAGAGAAGCTAACCTTGCTGCTGTTATTGCTGCTGCATCACAGTGGGGAGGACTACAAATGGAAGTCCCAGGTTTGAGAGAAGACACATATGAGCTTTGTTACAATGCAGCATGCCTTTCTCTGGGTCAGAATGATGTAGAAACTGCTCAACAAAAGCTCAAAAGGGCAGAAGagctATGTCAAAAAAGCCTTGAAGATGACCCTGATATAGGCGAGGAAGAGATTGAATCTGAAATGGGAGTTGTCAGGACCCAGCTTGCATATGCTTATCAACTCCAGGGGAGGAATGATGATGCACAGAAATTGTACAACCAAGTTCTTAAATCAAAGCCTGATGACCTTGCCCTAGCAGCTGTTGCCTCCAATAACATCATCACTCTCAACAGGGACCGAGATGTGTTTGACTCAAAGAAGAAAGTTAAATCAATGACTGCAGATGGACTGGAACACAAATCAACTGCATCACAGCAGCAGACAATGGCATTTAACAGATGCCTCTTGCTCTTTCACACAAATCAGCTTGAAGCTTGTCGCAACCTGATATCTACCTTGGAAACAAAATACCCTGAAAGTGATTTTCCTTGTCTGATGAGAGCATCACTTCTGCATAGAGAGAAACATTCTGATAAAGCTATAGAACTGCTCAAgAACTACGCGGACTCCCATGACGACACTGCTACAAATGTGAAACTTACATTAGTGCAGCTCTATCTGGCGCAAGGAAACATTCCCACTGCTTGTACAACGCTACGCTCAATAAAAGACTTGGCTTATAAACCAGGCGTGGTGTCTGCCCTGGTGACGATGTATTCTCATCTTGGGGACGTCACGTCTGCTGTTGGTGTCCTTGATGGTGCTGTTGAGCATGCTCAGAAGAACAAGGAGTTCATGAGACAGTCTGAGGTTTTGTCGTTGATGAGAGAGAATGTGGCATATAAACTGCAACATGGTAAAGCTAAAGAGGCGGTGGACATGCTGGAGAAATTGCATAAGGAGGATCCCCGCGACGTGAAGACGTTAGCTCAGCTTATCAAAGCTTATTCTCGGCTGAATCCTCAGAAGGCAGAGCACTACAGTGAAAAACTCAAACCGCTGGACACAGAGGCACAGAGTACATCTATAAACGTGGAGGAGTTGGAGATGTCGCTGAGTACCATGGGATCTCGATATAGTCGGGCAAGAATGAAACAAGAGGGTGGTGATACAGAAATGGCGGATTTGACGAAggaaagttttgtgaaaagaaggaagaaaaagcgaaagagagGTAAACTACCGAAAAACTACAACAGCGAGGTCGATCCGGACCCTGAACGCTGGATACCGAAAAGAGAACGGACGTATTACAAGGGTAAAAGACAGAAGAAGGGTGCTTCAGTTGGTAAAGGAACACAAGGTGCTGCAGCTCCTTCAGACGCTTCATCTAGTCCTAAAACACACGGAAGTCCCAAGCCCGCTTCTCCTCCTGGGACACCATCTGCGGCGGGTAATACCGCGAATGTAGTGCCGCCCCGGCAACAGCAGCCCCAGGCTGCCAAGAAGAAACAGCgaaccaagaaaaagaaaggaggcTGGTAACGATCGAAGCACTAAAGAGACTTAGCATTGATGATTTGATTTAAGGTTCTAGCTTGTAAGACAATCCTTGAGAAACTGCgcgcaaatttttttaaaaaattaaacgaagcAAAGCAAAACCTCGGAACTTAATGCATGCGAAGAAAACAACGTGTTTAAGCTACGCAAAGCCACCATTTATTGACAAGAAGAACAAATAAATGTCTTATC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08492 all species →	SRP72	SRP72 RNA-binding domain	Domain	Interproscan
PF17004 all species →	SRP_TPR_like	Putative TPR-like repeat	Repeat	Interproscan
PF07721 all species →	TPR_4	Tetratricopeptide repeat	Repeat	Interproscan
PF14559 all species →	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026270 all species →	Family	Signal recognition particle, SRP72 subunit	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013699 all species →	Domain	Signal recognition particle, SRP72 subunit, RNA-binding	Interproscan
IPR031545 all species →	Repeat	Signal recognition particle subunit SRP72, TPR-like repeat	Interproscan
IPR011717 all species →	Repeat	Tetratricopeptide TPR-4	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14094 all species →	SIGNAL RECOGNITION PARTICLE 72	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005786 all species →	Cellular Component	signal recognition particle, endoplasmic reticulum targeting	Interproscan
GO:0006614 all species →	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0008312 all species →	Molecular Function	7S RNA binding	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0048500 all species →	Cellular Component	signal recognition particle	Interproscan
GO:0042802 all species →	Molecular Function	identical protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03108	SRP72; signal recognition particle subunit SRP72	-	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.