Gene detail

Detailed information of PFX25842.1 in Stylophora pistillata

Genomic Location: Spis.scaffold140:513907...539584
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PCCA

ATGCTAGTGACTCAACAAACAGTTTGGTTCAGGAGATATCCACAGACATGGTCCAGAGGTTTACAGACATCAGCAGTTCGAAATGAACAGCTCTTTGACAAGATTCTTATTGCAAACAGAGGAGAGATTGCATGTAGGGTCATGAAAACATGTAAACTTCTTGGAATTAAAACTGTTGCAATCTATAGTGAAGCAGATGCAAATGCTCTGCATGTCAAAACAGCAGACGAATCCTTCTGTGTTGGTCCTCCCCCCACAAATCAAAGTTATCTCAACATGGATGCCATCATGGAGGCCATAAACACAACAGGAGCTCAAGCGGTTCATCCTGGGTATGGTTTTCTATCAGAAAATGACAAGTTTGTTGCAATGCTGGAAAAAGCTGGTGTCACCTTCATAGGACCAAATGCCGCGGCAATACAAGCCATGGGAGATAAGATTCAAAGTAAACTGATCGGCAAGAAGGCTGGAGTTAGCATTATTCCTGGGTTTGAAGGAGTTGTAAAGAATGATGAAGATGCAGTCAGAATAGCAAATGAGATAGGTTATCCGGTCATGATAAAGGCTTCTGCCGGTGGAGGTGGCAAAGGAATGAGAATTGCTTGGAATGATGAGGAAACAAAAGAAGGGTTCCGCCTTTCCTCCCAAGAGGCAAGATCCAGTTTTGGAGATGACCGTTTATTAGTGGAAAAGTTTATTGACAATCCAAGGCACATTGAGATTCAGGTACAGAATGCTGGTCATTTTACTGTGGTGTACTTAGTTGCCAAGCCTTTGATTCAGAGTGAGGCTGAAGGTGATCTTGTTGTGATAGAGACTTGTATCATTAAGGTCATCCTCAGCTTCACTCCTGTTCAAAGGCCTGGCAATCAAGCAGGCAATTATAAAATGGACTCTAGACTAGACCAATTGTTTTTAATTTTAAGCATTTGGGAATCTGGTCATCCGCTGAACATCACGCAAGCTGATATTCCCATCAATGGCTGGGCTGTTGAGTGCCGAGTGTACGCTGAGGATCCATACAAGAATTTCGGTCTTCCGTCCATTGGAAGGTTATACAAGTATATTGAACCAACACATCTGCCAAATGTTCGCTGTGACAGTGGTATCATTGAAGGAAGCGAGATAAGCATTTACTACGACTCCATGATATCAAAGCTGGTTACCCATTCGCCGACAAGAAATGAAGCTCTTGATCTGATGAACAAGGCTTTGGATTCTTATGTTATCAGAGGTGTCACATACAATGTTTCACTTCTCCGTGATGTTCTGAACCATCCCAAATTTCGCCTCGGAACCATCACCACGAAGTTTCTTCCTGAGGAGTACCCAAGTGGATTTAAAGGTCATCAGTTAACTGAGGAAGAAAGATATGAACTGCTGGCCACGACAGCTTATTTCTTCGTGCAGAGAGCAAGAAAAGCTATGGCCTTCAAGAACCAAAGCAAGTGGGTGAAAGAAAAAAGGATGGGGCCGGAACCAACTTCATTCCCACCCTACTCTCAACTAAGAGAAAAGGGCTTGAGAACGAGGCTCAATGCAGTGAGCAAACAACCATCAACCTGGGACCTGGTAATCACTCTGCAAAAAGCCGATTATCCAGTTGTGATACAGGCCAAGAAAGATGGCATTTTTGAGGTCAGCATGGATGGAAAACAAGTAGATTTCAACACCTCTTCTGGGCTGTCAGATCCAGTATTCGGTGCCAAGATAAATGGAAAAGACGTTTTATTACAGACGTTGAAGAAAGAGGGAAATCTTTTCGCAATCCAGCACTATGGGACAACATACAAGCTGCGAGTGCACACGAAGGATCAGTACGAGTACATGAAGTACATGCCAGAGAAACAAGAGGAGGACATGTCCCCATTCCTCAAGTCGCCCATGCCTGGCACCGTGGTATCAATGGCTGTTAATGTCGGTGACACGGTCCATGAAGGACAGGAGCTTGCAGTGGTGGAGGCAATGAAGATGCAGAACAGTTTGCATGCAGGGCTTTCTGGAACTCCTTCTCACGGTGAAACCAATTTGGCTCAATTTGGCTCAATTTGGCGCGAACCTGACATCACTACTGACATCACAATGATGGCGGCTCCGTCATCTTCACCAGCTTGGTTGACGAAAGCAAAGTCAACCGTCGGAGAAACAGTGAAACGAGAAATGAAAGACACCAGCGTTCCATTAAATGCTTCCAATTGCAACGGAAAAAGCGAAAGAGCAAAAGAACAAGAATTGAAAGACACTGGCACTCCTTTGGATGCTACTAATGGCGAGGGAAAAAGTGAAGGAGCCTTAGATCCTGCGATACTAGAACAGAGACGGCAAAACAGACGCGTGGCACGAAGACGTCAACAGAAACGAAGAAAACAAAGGCGTAAGGAAGAAAACAACGCAAAGAGATTGGTTAAGATGGAGAAACTTGTCAAGGAGCGGGCTTTGAAAATGGAAGCCGATCTTCTGGAAGCTTTGGAAGCAGAGAAAAACAACGCGGCAAAATATTTGTCACTCGCGCGGAAATACTACGGTATGTGGAAGGAAACAAACGAAGAACTCCAACTGTTTCGTCAACATGAGAAAGCATCGATCGCTATGGAGGGGGATGACTCGACATCCAAAAAGGTTTCCATATCATTAAAGGATGACAATTTGAAATTATCTCCAACAGCGACATCACTGTCATTGGACAGAAGATTTTCTGAATTCTCAAACTCTGGCACATTTAAACTCATTGGGGAAACCTTGAATATTAGCAGTGGAGTTTCAACAACCCAGCAATAA

Transcript

rna-Spis9502_mrna

atgctagtgaCTCAACAAACAGTTTGGTTCAGGAGATATCCACAGACATGGTCCAGAGGTTTACAGACATCAGCAGTTCGAAATGAACAGCTCTTTGACAAGATTCTTATTGCAAACAGAGGAGAGATTGCATGTAGGGTCATGAAAACATGTAAACTTCTTGGAATTAAAACTGTTGCAATCTATAGTGAAGCAGATGCAAATGCTCTGCATGTCAAAACAGCAGACGAATCCTTCTGTGTTGGTCCTCCCCCCACAAATCAAAGTTATCTCAACATGGATGCCATCATGGAGGCCATAAACACAACAGGAGCTCAAGCGGTTCATCCTGGGTATGGTTTTCTATCAGAAAATGACAAGTTTGTTGCAATGCTGGAAAAAGCTGGTGTCACCTTCATAGGACCAAATGCCGCGGCAATACAAGCCATGGGAGATAAGATTCAAAGTAAACTGATCGGCAAGAAGGCTGGAGTTAGCATTATTCCTGGGTTTGAAGGAGTTGTAAAGAATGATGAAGATGCAGTCAGAATAGCAAATGAGATAGGTTATCCGGTCATGATAAAGGCTTCTGCCGGTGGAGGTGGCAAAGGAATGAGAATTGCTTGGAATGATGAGGAAACAAAagAAGGGTTCCGCCTTTCCTCCCAAGAGGCAAGATCCAGTTTTGGAGATGACCGTTTATTAGTGGAAAAGTTTATTGACAATCCAAGGCACATTGAGATTCAGGTACAGAATGCTGGTCATTTTACTGTggtgtacttagttgccaagcctttgattcagagtgaggctgaaggtgatcttgttgtgatagagacttGTATCATTAAGGTCATCCTCAGcttcactcctgttcaaaggcctGGCAATCAAGCAGGCAATTATAAAATGGACTCTAGACTAGAccaattgtttttaattttaagcatttGGGAATCTGGTCATCCGCTGAACATCACGCAAGCTGATATTCCCATCAATGGCTGGGCTGTTGAGTGCCGAGTGTACGCTGAGGATCCATACAAGAATTTCGGTCTTCCGTCCATTGGAAGGTTATACAAGTATATTGAACCAACACATCTGCCAAATGTTCGCTGTGACAGTGGTATCATTGAAGGAAGCGAGATAAGCATTTACTACGACTCCATGATATCAAAGCTGGTTACCCATTCGCCGACAAGAAATGAAGCTCTTGATCTGATGAACAAGGCTTTGGATTCTTATGTTATCAGAGGTGTCACATACAATGTTTCACTTCTCCGTGATGTTCTGAACCATCCCAAATTTCGCCTCGGAACCATCACCACGAAGTTTCTTCCTGAGGAGTACCCAAGTGGATTTAAAGGTCATCAGTTAACTGAGGAAGAAAGATATGAACTGCTGGCCACGACAGCTTATTTCTTCGTGCAGAGAGCAAGAAAAGCTATGGCCTTCAAGAACCAAAGCAAGTgggtgaaagaaaaaaggatggGGCCGGAACCAACTTCATTCCCACCCTACTCTCAACTAAGAGAAAAGGGCTTGAGAACGAGGCTCAATGCAGTGAGCAAACAACCATCAACCTGGGACCTGGTAATCACTCTGCAAAAAGCCGATTATCCAGTTGTGATACAGGCCAAGAAAGATGGCATTTTTGAGGTCAGCATGGATGGAAAACAAGTAGATTTCAACACCTCTTCTGGGCTGTCAGATCCAGTATTCGGTGCCAAGATAAATGGAAAAGACGTTTTATTACAGACGTTGAAGAAAGAGGGAAATCTTTTCGCAATCCAGCACTATGGGACAACATACAAGCTGCGAGTGCACACGAAGGATCAGTACGAGTACATGAAGTACATGCCAGAGAAACAAGAGGAGGACATGTCCCCATTCCTCAAGTCGCCCATGCCTGGCACCGTGGTATCAATGGCTGTTAATGTCGGTGACACGGTCCATGAAGGACAGGAGCTTGCAGTGGTGGAGGCAATGAAGATGCAGAACAGTTTGCATGCAGGGCTTTCTGGAACTCCTTCTCACGGTGAAACCAATTTGGCTCAATTTGGCTCAATTTGGCGCGAACCTGACATCACTACTGACATCACAATGATGGCGGCTCCGTCATCTTCACCAGCTTGGTTGACGAAAGCAAAGTCAACCGTCGGAGAAACAGTGAAACGAGAAATGAAAGACACCAGCGTTCCATTAAATGCTTCCAATTGCAACGGAAAAAGCGAAAGAGCAAAAGAACAAGAATTGAAAGACACTGGCACTCCTTTGGATGCTACTAATGGCGAGGGAAAAAGTGAAGGAGCCTTAGATCCTGCGATACTAGAACAGAGACGGCAAAACAGACGCGTGGCACGAAGACGTCAACagaaacgaagaaaacaaaggcGTAAGGAAGAAAACAACGCAAAGAGATTGGTTAAGATGGAGAAACTTGTCAAGGAGCGGGCTTTGAAAATGGAAGCCGATCTTCTGGAAGCTTTGGAAGCAGAGAAAAACAACGCGGCAAAATATTTGTCACTCGCGCGGAAATACTACGGTATGTGGAAGGAAACAAACGAAGAACTCCAACTGTTTCGTCAACATGAGAAAGCATCGATCGCTATGGAGGGGGATGACTCGACATccaaaaagGTTTCCATATCATTAAAGGATGACAATTTGAAATTATCTCCAACAGCGACATCACTGTCATTGGACAGAAGATTTTCTGAATTCTCAAACTCTGGCACATTTAAACTCATTGGGGAAACCTTGAATATTAGCAGTGGAGTTTCAACAACCCAgcaataatttattatttgtattttaggCTGAGATAAATTTATCTTCTGTTTTGTTCTTCAATACATTTAATTTTCCAGACTTCGTAGTTAAAGATATGAACAGCTAGTTTTAAAAAGATGcagctttcttttatttattatttttatttaattttttttttttttggtcaaggGAAATTCACCCATAGTTCTGTTCTTAAGtacatttattttccaaagACTTCATTGTTTAAGTTGAGAACAGCATGGTTCAAAGGTTGCAACTTCCATTACATTCAGAATTTGAAGGACAGAAATTTGATCGCGatttgataatttaaatgtACATAAGAATGAGAACACAACTTGTGCATGATTTGGAAGGCCAGCAACATGGTTAACAAAAGGCAGTTTATCTATCCTGAATTTTAAAAGACTGGatcattttattgatatttataTAAATGTGAGATTCAAAGGCTAtctttattaagaaaaaggttTCCTACAAAAATTACCTTCAGATTTATAGGAGTGTTTCCTAACTGTACCCTAACAAATTCTTTAGATTGCTTGgatttattttcaagtttgatgACAGTTATTAAGAATAAAATACAAGCTCTGCATGAAATAAGTTACTCCTAGACAACAAATGCTCTGTGGTTACTGAAAAAATATGGAGACCATTTCTTTCATTGGTTTATTTCCatgattaaaggctgatagtttcgaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18140 all species →	PCC_BT	Propionyl-coenzyme A carboxylase BT domain	Domain	Interproscan
PF00364 all species →	Biotin_lipoyl	Biotin-requiring enzyme	Domain	Interproscan
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF02785 all species →	Biotin_carb_C	Biotin carboxylase C-terminal domain	Domain	Interproscan
PF00289 all species →	Biotin_carb_N	Biotin carboxylase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR041265 all species →	Domain	Propionyl-coenzyme A carboxylase, BT domain	Interproscan
IPR005482 all species →	Domain	Biotin carboxylase, C-terminal	Interproscan
IPR011054 all species →	Homologous_superfamily	Rudiment single hybrid motif	Interproscan
IPR000089 all species →	Domain	Biotin/lipoyl attachment	Interproscan
IPR011053 all species →	Homologous_superfamily	Single hybrid motif	Interproscan
IPR011764 all species →	Domain	Biotin carboxylation domain	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR005481 all species →	Domain	Biotin carboxylase-like, N-terminal domain	Interproscan
IPR050856 all species →	Family	Biotin-dependent Carboxylase Complex	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR001882 all species →	Binding_site	Biotin-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18866 all species →	CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004658 all species →	Molecular Function	propionyl-CoA carboxylase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX25842.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.