Gene detail

Detailed information of PFX25865.1 in Stylophora pistillata

Genomic Location: Spis.scaffold140:447661...463369
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Rps19

ATGGTGGATCAAACACAGTGTACAGGAGAAATCTCTGCTGCCTCAGCTGTGATTCTCGGAATTTTGAATGCAGTATCCGCATTAGCAGCCATCAGTGGAAATCTAATGGTTCTTGCGATTCTCTTCAAGAACAGCTCCCTTCGCCAACCGTGTTATTACCTTATAACTTCCTTATCTGCCATCGATCTGTTCGTGGGCATGGCAGTGAATCCGTTGTACATCTTGTTAACCAACGTTGTACCTTGGCAGTACAGAGAGAAACATCTCTTGCAGCTCGAAAGCTTTTTAGCCATGTCCAGCTCGATGATCATCATGCACACTTTGTGTATAATGAGCGTAGAGCGCTATATCGCTGTCATATTTCCGTTGCGTTATATGAGCATTGTAACCGTGAAGCGCACTGTAATCGCTGCTGTGATGACTTGGGTGTTCGGCTTCATGCTCAATGCCTTTTCTTTTGCACTGGATACTCAAGACCTGCCAAAACTGTGGATTATTTGCGGAGTGTTAACAGGACTTGTTCCCATGGCAATCATCCTTTACACCTATGGAAAGATTTTAATCGCTGCGCGCGACCAGTCGAGAAGAATTGCATTCGCAGAGAACAGTGTCTCCGTGATTTCGCGAGACACCGAAGGCGCCGTGGATGGCGTTGAAATAACCCGCCCTCGAATTGAGCTCAAAAAAGCCAAAAAAAACGCCTGGACCGTGGGGATAGTTGTTCTGGTGGCACTCTCTCTTTCTATGCCAGTGAGCGTGGCTCCCAAAGTCCCAAATTTGCGTGTAATTTTCCAAATGAGCTCTGCAATACCGGGAGAGACTGGAGGCAAGTCAAGTGCCCCTTATGGCACGGCGGCCGCCCCTTATTCTTCCTCTTCTCTACAAGCAAAGATGCCCGGTGGTGCGACAGTGAAAGACGTTTGTCCTCACGAATTCATCAAGGCTTTGTCGGCCCATTTGAAGAACCCAGCAAACAATGTAAAGACTTGTGCTAGGGTTACTGGAGCAAGGGGTGGAAAGCTGAAGGTTCCTGAATGGGTGGACTTGGTAAAAACAGCGAAAAGGAAAGAACTTGCCCCATATGATCCTGACTGGTATTACATCAGGGCAGCTTCAATCCTCCGTCATGTGTACCTGCGCAGTGGTATCGGTGTTGGTCACCTCACTCGTGTCTATGGAGGACGTAAGCGACGTGGTGTCAGGCCAAGTCATTTTGAGCGCGGCTCTTCATCCATTGCTCGCAATATTTTGAAAGGCTTGGAACAGCTTAAAATGGTTGAAAAGGACAACACTGGTGGCCGAGCAATCACAAGTCAAGGTCAGCGGGATTTGGACCGAATTGCTTGCCAGGTAAATGTTGCTAGTGAGGACATGAAGTTGGCGCTTTTAATAACCGTTCAAAATGCCTTCCTGTTAGCTATCTATGGGCAGTTAAGAATTACACCTTGGAGAAACAGAGATTGTACAAGGATGACCCAGGCCTGTGATCGGATAACGCGTGGCATCCAAGGAATACCCGGGCCTCCAGGAATCAATGGGAGCCCGGGTGAACCGGGCCAGGCGGGACCCGCAGGACCAAAGGGGTTTAGAGGACCTCCTGGAAGATCTAGACCTGGCCCTCCAGGACCAGCGGGGCCACCCACGGGTCAACGCCCGGGTCCCTCAGGGGATCGCGGTGAGAGTGGAAGGAGAGGAAACCCTGGGGACCGTGGAGACAATGGAGAGAATGGACAAAGGGGAAGGAAAGGATTCAAGGGGTTTGATGGGGATAAGGGAAGGATAGGCCCCGAGGGAAGCCCTGGAGAACAAGGTCCCCCTGGGATGACAGGGTCCGCCGGCACAATGGGAGCTTGGACGCGCTGCTCCTGGGAGTTAAACCGCAATAAAGATAACGGGCTGCTGAAGGAATGTATTTTCTCAAAAAAAGACCCCAACTCAGTATTGCACGTGGTATATGAAGGCAATCTACAGATCGGTCTTTGCCAGGACTGTTGCAAGCGTTGGTACTTTATATTCGACGACGCCGAGTGTAACAACCCAGGCCCTGTCGACGCGATAATGTCGGGAGGTCTGGGTCGTAACTACCCGTTTTACTCTTATGGAAGAATCGAAGGCTTTTGTGAAAGAAGATTTTCTTCAGGGCTAGTTCGAATTGGACTGCAAATGGAGAACTGTAAGACTTTTGCGAGCTCTACGTTACCTTACAATATACAACTTTATAAGCGTTATGGAAGCATACTCATTCGAGAAATTCCTCCAGCGCAATGA

Transcript

rna-Spis9496_mrna

ATGGTGGATCAAACACAGTGTACAGGAGAAATCTCTGCTGCCTCAGCTGTGATTCTCGGAATTTTGAATGCAGTATCCGCATTAGCAGCCATCAGTGGAAATCTAATGGTTCTTGCGATTCTCTTCAAGAACAGCTCCCTTCGCCAACCGTGTTATTACCTTATAACTTCCTTATCTGCCATCGATCTGTTCGTGGGCATGGCAGTGAATCCGTTGTACATCTTGTTAACCAACGTTGTACCTTGGCAGTACAGAGAGAAACATCTCTTGCAGCTCGAAAGCTTTTTAGCCATGTCCAGCTCGATGATCATCATGCACACTTTGTGTATAATGAGCGTAGAGCGCTATATCGCTGTCATATTTCCGTTGCGTTATATGAGCATTGTAACCGTGAAGCGCACTGTAATCGCTGCTGTGATGACTTGGGTGTTCGGCTTCATGCTCAATGCCTTTTCTTTTGCACTGGATACTCAAGACCTGCCAAAACTGTGGATTATTTGCGGAGTGTTAACAGGACTTGTTCCCATGGCAATCATCCTTTACACCTATGGAAAGATTTTAATCGCTGCGCGCGACCAGTCGAGAAGAATTGCATTCGCAGAGAACAGTGTCTCCGTGATTTCGCGAGACACCGAAGGCGCCGTGGATGGCGTTGAAATAACCCGCCCTCGAATTGAGCtcaaaaaagccaaaaaaaacgCCTGGACCGTGGGGATAGTTGTTCTGGTGGCACTCTCTCTTTCTATGCCAGTGAGCGTGGCTCCCAAAGTCCCAAATTTGCGTGTAATTTTCCAAATGAGCTCTGCAATACCGGGAGAGACTGGAGGCAAGTCAAGTGCCCCTTATGGCACGGCGGCCGCCCCTTATTCTTCCTCTTCTCTACAAGCAAAGATGCCCGGTGGTGCGACAGTGAAAGACGTTTGTCCTCACGAATTCATCAAGGCTTTGTCGGCCCATTTGAAGAAcccAGCAAACAATGTAAAGacttgtgctagggttactgGAGCAAGGGGTGGAAAGCTGAAGGTTCCTGAATGGGTGGACTTGGTAAAAACAGCGAAAAGGAAAGAACTTGCCCCATATGATCCTGACTGGTATTACATCAGGGCAGCTTCAATCCTCCGTCATGTGTACCTGCGCAGTGGTATCGGTGTTGGTCACCTCACTCGTGTCTATGGAGGACGTAAGCGACGTGGTGTCAGGCCAAGTCATTTTGAGCGCGGCTCTTCATCCATTGCTCGCAATATTTTGAAAGGCTTGGAACAGCTTAAAATGGTTGAAAAGGACAACACTGGtggcCGAGCAATCACAAGTCAAGGTCAGCGGGATTTGGACCGAATTGCTTGCCAGGTAAATGTTGCTAGTGAGGACATGAAGTTGGCGCTTTTAATAACCGTTCAAAATGCCTTCCTGTTAGCTATCTATGGGCAGTTAAGAATTACACCTTGGAGAAACAGAGATTGTACAAGGATGACCCAGGCCTGTGATCGGATAACGCGTGGCATCCAAGGAATACCCGGGCCTCCAGGAATCAATGGGAGCCCGGGTGAACCGGGCCAGGCGGGACCCGCAGGACCAAAGGGGTTTAGAGGACCTCCTGGAAGATCTAGACCTGGCCCTCCAGGACCAGCGGGGCCACCCACGGGTCAACGCCCGGGTCCCTCAGGGGATCGCGGTGAGAGTGGAAGGAGAGGAAACCCTGGGGACCGTGGAGACAATGGAGAGAATGGACAAAGGGGAAGGAAAGGATTCAAGGGGTTTGATGGGGATAAGGGAAGGATAGGCCCCGAGGGAAGCCCTGGAGAACAAGGTCCCCCTGGGATGACAGGGTCCGCCGGCACAATGGGAGCTTGGACGCGCTGCTCCTGGGAGTTAAACCGCAATAAAGATAACGGGCTGCTGAAGgaatgtattttctcaaaaaaagaCCCCAACTCAGTATTGCACGTGGTATATGAAGGCAATCTACAGATCGGTCTTTGCCAGGACTGTTGCAAGCGTTGGTACTTTATATTCGACGACGCCGAGTGTAACAACCCAGGCCCTGTCGACGCGATAATGTCGGGAGGTCTGGGTCGTAACTACCCGTTTTACTCTTATGGAAGAATCGAAGGCTTTTGTGAAAGAAGATTTTCTTCAGGGCTAGTTCGAATTGGACTGCAAATGGAGAACTGTAAGACTTTTGCGAGCTCTACGTTACCTTACAATATACAACTTTATAAGCGTTATGGAAGCATACTCATTCGAGAAATTCCTCCAGCGCAATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF01090 all species →	Ribosomal_S19e	Ribosomal protein S19e	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR001266 all species →	Family	Small ribosomal subunit protein eS19	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11710 all species →	40S RIBOSOMAL PROTEIN S19	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0000028 all species →	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX25865.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.