Gene detail

Detailed information of PFX25920.1 in Stylophora pistillata

Genomic Location: Spis.scaffold139:382297...399805
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

TMF1

ATGAGCTGGTTTGATGCTTCGGGGTTTTCATCTTTCGCTAAAACAGCTTTATCTCAAGCACAAAAATCCATTGATAAGGTCCTCGATATCGAACAAGATGAAACTAGCAGTGCTGCTTCAAAATCTTCGGCTCTGAGTGCACCAAAGTCTACCCTGCCGTCATCCTTAGGCACATCTCCAAAGGATACTTTAACACCTAAAAAATCATCTTCCTCTTTATCTGGGAATTCTACTTCAAAATCAGCCAGGAAACCATCTTCAGGTGCGAACAATTCAAAGGACAGTGATAATGATGGAAATTCATTTTGGTCATCCTTTCTTGGTGATTCCTTTTCATCAGCAACATCAAAAACATCAAATCGTAGAGCTAGTGGACAGAAACTTGGTTCCCAAATAAGTGGTGGAAAAATGAAAAACAATGATGACAGACTGGACACTGAGGATGCTAAAATGTTGAAAGGCGAAGACAAAGTCTCATCTCCAAGAGCACTAAAACAGCAGAGAAAGAAAGACATCAACATGACTGACAGTAGCACAAGGTCAAGTGATCAATCCCAAGTACCCCAGACTTTATTACCTCTGAAGGAAGATTTGACAAATGCTGAGGATATTTCTGAAAAGAATGAAAATAGCACTGTTGTTGTATATCCTCAAGAGGCTAAGGATCTTACAGATAGTCCTAGAAAGGAAGAGTTGAACACACATGAATCATCTGTTGTACCTGCTCTAAAAGGGACCAACTTGAAATCACAGCATTTGAAATATTCATCTACCAGTAAGGGTAGGAAGGAGAATAAAGAAGTGCTTAGCACTGAAAATAATGTGTGCAAAAAAAATGTTGAAAATGTTGAGCTAGATGCTTTGATTGTTGCGCACGACAAAACACCTGACGACAAGTTAGAGTCTGTTCATGAGCACCTTAATACAGAAACTGGGCAGTCTGTTCCAGATAAAAGTATTGCAGATTCACCAGATACAGATGAGGAGAAATTGGACTGCTCTAAAAAGACATATGGTTTTATGACCTCAAATGAAACTGGGGAAATAGCTCCTGATTTAGGTAACAAATTGGAAAGCCATGACTTTTCTAAGTCATTGCTAAAAGATTCAACAGGAAGCAATATTGTGGTAGAAATTAAACAAGAGGAAGTTGCGCAAAATATACCAAGTGTTCAACCTGTGGCCAGTTCAACACCAAAACATGTTGCCAAGGAGCAGAAATGTACACCACTAGATATGGCAATGAAACCTGAAATGGAACCTACTGATGAAAATGAAGAAGCTTCAAATGACAAAGGAGACTTACAAGCTCATGTGTGTGATCCAGAAATTCTAATTTTACAGAGCAAAGAATGCGAGGCATTGTCAGAAAATGTTGTAGAACTGTTTGCAGAGGCTGCATCTGTTGTTCAAGACAAAAGATCAGTGGATGACAAATCACAACAGGAAGTTAAAGAGCATACTTGCATACATTCACATACAGGAAAGATGGTTGATATGTTGTCATTACAACAGTCAAGTGGAAATGATGATGAAACAAGGCAAAAGAAAATGAATTCAATGGGAGATGATCCAAATTCTACTGAAAGCTCAGAAGACACAAAGAGGAAGATAGAAGAACTGCAAAAGGAAATTTCTGGCCTCAAACATGTGATTGAAGTACGTGAGAATAAGCTGATTGAAGTTAGTAAAGAAAATATAGACCTGCAAGAGACATGTGCTGTTCTGAGGAGTCAGCTGAAACAAGCTGAAGATGCATTTAAGGGAGAGAATGAGGAAATTGAGGAAGTGAAAAAAGAGTTTACTGTTCGTGTTGCTGCTACAGAGAAGAAATTTCAAGCTGCAGCAAAGGAAAGGGATCATTTGAGGGCACTTTTAGAGGAGACTGAACATTCTCTTTCCTCCAAGAATGAACGACAGTCTGAAGAGTTTACAACTCTACTCAAGGAAAAAGATGATCAAATTGCTCAGTTACTAGAAGAAGGTGAAAAGTTGTCTAAACAGCAACTTCAAAGCAACAATATTGTCAAGAAGCTTAGAAGTAAGGAAAAGGAGAATGATGCTTTAATCAAGAAAAATAGCAAGTTATTGGAGGAAATGACAGCTGAAAATACCAGGCTGACTGAAATCCTGAAAGTCAAAGAAGAAACAGAGAGAAAACAAGCAGATGCTATAACACAACTTAATAGCTATGTTGAAAAGCAAGACACTCAAATGAGTAAACTGAAGTCTGAATTAGATGATTCAGCTGAGAAGATAAGAAGCATGCAGGCTGCACTGGACAATGCATACAAACAATTGGCAGACCTACACAAAGAAAATGCTTCTAAAGATAGCGCCGTGCAGGAAGCTGCTCTCAGTGCTGAAATGACTGCCAAAGAAGGACTGAGGATTGCAATGGAGAAAAAAGAAAGACAGTTCAAGAGTGAAACTGAGGCATTAGAATTCCAGATCAGCGACCTTCAAACTGGGTTCCGTCGGGCTGAACAACAGGCCAGTAGAAGGGAAGACAATCTACGTCAAGAAATAAGTGATCTACAACAGAGGTTGCAAGAAGCAGAAGCTCGTAACCAGGAACTCACAGAAAGTGTCACTTACGCCACAAGACCACTGTTAAGGCAGATAGAAAACCTGCAGAGCAGCTATGGAAATCACACGCAAACTTGGGAAAGAGTAGAAAGGAACTTAACAGAGAGGCTGAATGAGGCGCAAGTTCAACTGGTTGAGGCTCAGGAAAAGGAGCGCGTTGCCACAGAGCATGCGCTGGAGTTGAACTCCCGCTTGACAGCTGTGGAGTCACAGCTGGCGACATACAGGCAGGAGAAGACGCGACTGGAGGCTACACTGGAGATGGAACGAGCGAGACTGGAAACTGCTGAGGAAGCGAAGAGCAGGGAAACTGCTAAGATAGAGACATTGGAGATCAAATATAGAAAAATGATGGAAGACAATAACTTGGAGAAGGCTTTACTTGAACAACAACTCGCCGTAGAGAAAGGCAAGATGGAAACCGAAAAGAAGAAGTTTCAACACGCCATGGAAGAAAAAGAGAGAAGTTTACTTCGACAATCCAGTGTTTCGGAAGCACCTCCATCTCCTACTGCCAGAGACTACTCTTCACAGGACGAAAATATCGATAATCCCCATCACAGGCCACTTGGACGTCAGGGTAGCACCAGTGGTATCATTGATGGCATCTCAAGGGGAATCATGGGAGCTGGCACCGCCATGGTCGAGAGACTGCAGGCTCAGGTCAAACAAAAAGATGGTGAAATTCTGCTTTTACAGGAAGAGAGAACTACGCTACAAAAAACACGCGATGCCGTCACTGAAGAACTAGCAACACTCACTTCTAAAATGGAGGGTATGGAGGAAGACAGTAGACTTTTAGCTGATCTACAAACACGATACAAAGAGCTAGAACAGCGTCATAACGCTGTGCTTCAAATGTACGGTGAGAAAGCTGAGCAGGCTGAAGAACTGAAAATGGACTTGGAAGATGTCAAATCCATGTACAAGCAGCAGATTCAGGAACTCCTTGGAGCCGCAAGATGA

Transcript

rna-Spis9449_mrna

CATGGCGGTCGCATTCATACGTGGATAgtgttttaaacatttcttttttgtctccttggaaatatttcaaaattatccCTTAGACAAGATGTATAGCTGTAAGAACTCTAGACTATAGCCATGAGCTGGTTTGATGCTTCGGGGTTTTCATCTTTCGCTAAAACAGCTTTATCTCAAGCACAAAAATCCATTGATAAGGTCCTCGATATCGAACAAGATGAAACTAGCAGTGCTGCTTCAAAATCTTCGGCTCTGAGTGCACCAAAGTCTACCCTGCCGTCATCCTTAGGCACATCTCCAAAGGATACTTTAACACCTAAAAAATCATCTTCCTCTTTATCTGGGAATTCTACTTCAAAATCAGCCAGGAAACCATCTTCAGGTGCGAACAATTCAAAGGACAGTGATAATGATGGAAATTCATTTTGGTCATCCTTTCTTGGTGATTCCTTTTCATCAGCAACATCAAAAACATCAAATCGTAGAGCTAGTGGACAGAAACTTGGTTCCCAAATAAGTggtggaaaaatgaaaaacaatgatGACAGACTGGACACTGAGGATGCTAAAATGTTGAAAGGCGAAGACAAAGTCTCATCTCCAAGAGCACTAAAACAGCAGAGAAAGAAAGACATCAACATGACTGACAGTAGCACAAGGTCAAGTGATCAATCCCAAGTACCCCAGACTTTATTACCTCTGAAGGAAGATTTGACAAATGCTGAGGATATTtctgaaaagaatgaaaatagcACTGTTGTTGTATATCCTCAAGAGGCTAAGGATCTTACAGATAGTCCTAGAAAGGAAGAGTTGAACACACATGAATCATCTGTTGTACCTGCTCTAAAAGGGACCAACTTGAAATCACAGCATTTGAAATATTCATCTACCAGTAAGGGTAGgaaggagaataaagaagtgCTTAGCACTGAAAATAATGTGtgcaaaaaaaatgttgaaaatgttgAGCTAGATGCTTTGATTGTTGCGCACGACAAAACACCTGACGACAAGTTAGAGTCTGTTCATGAGCACCTTAATACAGAAACTGGGCAGTCTGTTCCAGATAAAAGTATTGCAGATTCACCAGATACAGATGAGGAGAAATTGGACTGCTCTAAAAAGACATATGGTTTTATGACCTCAAATGAAACTGGGGAAATAGCTCCTGATTTAGGTAACAAATTGGAAAGCCATGACTTTTCTAAGTCATTGCTAAAAGATTCAACAGGAAGCAATATTGTGGTAGAAATTAAACAAGAGGAAGTTGCGCAAAATATACCAAGTGTTCAACCTGTGGCCAGTTCAACACCAAAACATGTTGCCAAGGAGCAGAAATGTACACCACTAGATATGGCAATGAAACCTGAAATGGAACCTactgatgaaaatgaagaagcTTCAAATGACAAAGGAGACTTACAAGCTCATGTGTGTGATCCAGAAATTCTAATTTTACAGAGCAAAGAATGCGAGGCATTGTCAGAAAATGTTGTAGAACTGTTTGCAGAGGCTGCATCTGTTGTTCAAGACAAAAGATCAGTGGATGACAAATCACAACAGGAAGTTAAAGAGCATACTTGCATACATTCACATACAGGAAAGATGGTTGATATGTTGTCATTACAACAGTCAAGTGGAAATGATGATGAAACaaggcaaaagaaaatgaattcaatGGGAGATGATCCAAATTCTACTGAAAGCTCAGAAGACACAAAGAGGAAGATAGAAGAACTGCAAAAGGAAATTTCTGGCCTCAAACATGTGATTGAAGTACGTGAGAATAAGCTGATTGAAGTTAGTAAAGAAAATATAGACCTGCAAGAGACATGTGCTGTTCTGAGGAGTCAGCTGAAACAAGCTGAAGATGCATTTAAGGGAGAGAATGAGGAAATTGAGGAAGTGAAAAAAGAGTTTACTGTTCGTGTTGCTGCTACAGAGAAGAAATTTCAAGCTGCAGCAAAGGAAAGGGATCATTTGAGGGCACTTTTAGAGGAGACTGAACATTCTCTTTCCTCCAAGAATGAACGACAGTCTGAAGAGTTTACAACTCTACTCAAGGAAAAAGATGATCAAATTGCTCAGTTACTAGAAGAAGGTGAAAAGTTGTCTAAACAGCAACTTCAAAGCAACAATATTGTCAAGAAGCTTAGAAGTAAGGAAAAGGAGAATGATGCTTTAATCAAGAAAAATAGCAAGTTATTGGAGGAAATGACAGCTGAAAATACCAGGCTGACTGAAATCCTGAAAGTCAAAGAAGAAACAGAGAGAAAACAAGCAGaTGCTATAACACAACTTAATAGCTATGTTGAAAAGCAAGACACTCAAATGAGTAAACTGAAGTCTGAATTAGATGATTCAGCTGAGAAGATAAGAAGCATGCAGGCTGCACTGGACAATGCATACAAACAATTGGCAGACCTACACAAAGAAAATGCTTCTAAAGATAGCGCCGTGCAGGAAGCTGCTCTCAGTGCTGAAATGACTGCCAAAGAAGGACTGAGGATTGcaatggagaaaaaagaaagacagtTCAAGAGTGAAACTGAGGCATTAGAATTCCAGATCAGCGACCTTCAAACTGGGTTCCGTCGGGCTGAACAACAGGCCAGTAGAAGGGAAGACAATCTACGTCAAGAAATAAGTGATCTACAACAGAGGTTGCAAGAAGCAGAAGCTCGTAACCAGGAACTCACAGAAAGTGTCACTTACGCCACAAGACCACTGTTAAGGCAGATAGAAAACCTGCAGAGCAGCTATGGAAATCACACGCAAACTTGGGAAAGAGTAGAAAGGAACTTAACAGAGAGGCTGAATGAGGCGCAAGTTCAACTGGTTGAGGCTCAGGAAAAGGAGCGCGTTGCCACAGAGCATGCGCTGGAGTTGAACTCCCGCTTGACAGCTGTGGAGTCACAGCTGGCGACATACAGGCAGGAGAAGACGCGACTGGAGGCTACACTGGAGATGGAACGAGCGAGACTGGAAACTGCTGAGGAAGCGAAGAGCAGGGAAACTGCTAAGATAGAGACATTGGAGATCAAATATAGAAAAATGATGGAAGACAATAACTTGGAGAAGGCTTTACTTGAACAACAACTCGCCGTAGAGAAAGGCAAGATGGAAACCGAAAAGAAGAAGTTTCAACACGCCATGGAAGAAAAAGAGAGAAGTTTACTTCGACAATCCAGTGTTTCGGAAGCACCTCCATCTCCTACTGCCAGAGACTACTCTTCACAGGACGAAAATATCGATAATCCCCATCACAGGCCACTTGGACGTCAGGGTAGCACCAGTGGTATCATTGATGGCATCTCAAGGGGAATCATGGGAGCTGGCACCGCCATGGTCGAGAGACTGCAGGCTCAGGTCAAACAAAAAGATGGTGAAATTCTGCTTTTACAGGAAGAGAGAACTACGCTACAAAAAACACGCGATGCCGTCACTGAAGAACTAGCAACACTCACTTCTAAAATGGAGGGTATGGAGGAAGACAGTAGACTTTTAGCTGATCTACAAACACGATACAAAGAGCTAGAACAGCGTCATAACGCTGTGCTTCAAATGTACGGTGAGAAAGCTGAGCAGGCTGAAGAACTGAAAATGGACTTGGAAGATGTCAAATCCATGTACAAGCAGCAGattcAGGAACTCCTTGGAGCCGCAAGATGACACTATGAAGTAGCGGGTTCATCTACGATAAGTCCGGCACTCTGTCGAAGACGAAAAATCACATCATACTAAAGTGCGTTTAGTTGGAATCAGTCTGGGTTGAGAATTATTGAGATATTGTTAGGAAACATTAGTTTTGGAGTTTTCTCGCTTCGAAATACTTTGATTTTCATCTTAGCTATTCGGCCAAGTCACATATTAATCGCTACATTTATAGTAATGGGAACAAGAGTATCATCATTTACGGGCTAATTCATCTAGGGTAGGGTAGGTAAACCATACGCGTACTGTTCACATCTTATTTTAATCCCAGTAGTTTTCTGCGCAAGAGATCTCCTCTAATTCTTAAACAATATATTACTGACAACCGAAAGTACGATGAGAATTCCCTGGTATTGTTGGTAAATTACTTTCGGTGCTTGTATTAGTGAGTTGAAAACATGTTTTATAGCGAGGGCGTTCCTAGAGACCGtaaaatttttctgaaatttttttctttggtttccaAAAGTAACGCAAAActgaggtaaaataaaaaaaaaagtttttttgcagACTAGAAAACTGTAGCAGAACAAAGCAAtcagaaagacagaaaaagtGCCCTTGAAGTTGAAAATTGTCATGAATTTTACCAGCAACTTAAGTGTTTGTTGAATAAGGTATAATTATTGAGTAATGACATGTATTCAGCGTCAAATGAACACACCCGCGGCTTTTGGACTCGAAATAAACTCGGAATAAATGAGAAATTCAAACTCGTCGATGAATGCTGTCACTCATTTGATAGCCTGTTTGGCGTTTATTGGCTGTCAAGTTACAAAGAAATCGTGAATGCTTAATAAAGTCGTGAAAGTTCAAAAGTGTTCTGGATTGATCCAACGACAATTTTTAGTGGAATAAGCGGCTGTAACAGTGAAACAGTTCCTCAGTCTGTTGTCCACTGAGCGAGGTAAATGAATCgaaatacattttaaaagtaaaaataaatacgtcagtagaagaattttaaaaagttattttagttCTTAAAGGATTGGGAAGGAAGGATAAAAATCGTTGGTTACAGGCCACTAACACACTTTGGCGAACCAATTAAAATCCAGAATTTTGCACAGCACACGAAGTGTGAATAATACTGGGGTTCCAGGTGCGATCAACAGCAGGAAATACGCAGGACTAGGGTAGGAAACCTGTACTGCAAGCACGAGCGAATTTTACTTGAGTCTGAAGGTGGCATATTTTGGAGAAAAGTGTACAATATCTCGCTGGGAATAATTAAATAGATTTTAAATTGCAATAGGTGGAAGGCACTTTTTGTAGAATAAACACTGATAACTGTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12325 all species →	TMF_TATA_bd	TATA element modulatory factor 1 TATA binding	Coiled-coil	Interproscan
PF12329 all species →	TMF_DNA_bd	TATA element modulatory factor 1 DNA binding	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022091 all species →	Domain	TATA element modulatory factor 1, TATA binding	Interproscan
IPR022092 all species →	Family	TATA element modulatory factor 1 DNA binding	Interproscan
IPR052602 all species →	Family	Growth and transcription regulation protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46515 all species →	TATA ELEMENT MODULATORY FACTOR TMF1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20286	TMF1; TATA element modulatory factor	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.