Gene detail

Detailed information of PFX26005.1 in Stylophora pistillata

Genomic Location: Spis.scaffold136:196414...201152
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis9317_mrna

TGACGTCTGGAGCTAAAAAGTTACTTATTTCATTTCCCCTTCCCATGGAGGAAAAGATTATCCAATAGAAGACAAGGCCGTCAGCTACGAAAATAACTCTGCAGAATTAGCACTCTATTTGATTTATATTGGAGAACTCTGCTGTGTTTATAACTCTGACACATTCATCGAGCTTTAAAGAAGACGGCAGAAGCGAAAATAAGGTAGCAGAGCATGGCTTTTTCTAATCTGCAATCGATGTTCAAGTTAGCTCAGAGGCCTACACATATAATCAGTGACAGACGAGGCCAAGAATTTGAGCTCAAGTCAGACGCAAAAGATGCCTTGTTGATCGTAAAGAACTGCACAGATTGCCATGCAAGTTTACAAGAAAAAGCTGCCAAGTTACTCATCGAGAAATGTGACAACTTGGTGCTAGACGTTAAATGCACGCTGATATCTGGTGTACTGGAACTTCTGAACTGCAAGAAAATAGTGCTAAATTTACTTGAAGGTGGTCAGATTCCAACCATCATGGCTGACAGTACATCAGATCTGTTGATCACTCTGCTGAGGCATTCCCAGTTTGAATCTATGTATCTTCATGGACATTCAAGTAATATTGAGGTCTGCGTAGGTGAAGAAACCTCAACAAAATATCCAGTGTCTTTTCCATCTGATGTCCCATCACACTTTCAGTTTGTTGTATCTTGGGAGAAAGAAGAGGAAGGTTGGAAGCTTGTTTGTGAAAAGGTTGTTAGGGATGGTGTGTTCCCAACTACAGAGCGTAAAGTGAAGGAagctgaagaaagaaaagctaGAGACTTAGAGAAAATGGTAACAGCTCTTTTTGATAGTATCAAGATTACCCCAAAAGAACAACAGAAAGACAAACCAAGTCCAGGTTCTGCAGCTGAGActgaaaAAAAACCAAGCCCAAGTGGTAGTGGCCATCATAACATTAAGAATGAGGATGACAAGAAAGAGTTCTTTGACTCCTCAGAAGAGCTGGAGCAAAAGATTGATCTTCTTGCAAAATGGGTCAAGGAGAGTAAACACTGTGTTATGTTCACTGGTGCAGGAATCAGCACAAGCACAGGTATCCCAGATTTTCGAAGTGGCATGAACACTGTGCTGAAGACAGGCCCTGGTTTATGGGAGTTACAAGCTAAAGGCGTCACTCGCCAGCCAGGTAAAGTTACTCCCATGTTAAAGGCAATACCCTCGCCTTCCCACATGGCCATCGTGAAACTCCACAAGGAAGGGTTGGTAAAGTTCACTGTCAGCCAAAATGTTGATGGTCTCCACTTGCGCAGTGGTATTCCCAGTGAGGAGCTTGCTGAACTTCATGGAAATACCAACTTAGAAAAGTGCACTACCTGTGGTGCTAAATATTTGAGAGATTTTGACACAAGAACTGCAACAAGAGTTCATGACCACTTGACTGGAAGGTCCTGTGATAACATCAAGTGCTGTGGACCTTTAGTGGACTCCATTATAAACTTTGGCGAGAGTCTGCCCGATGATGACCTGATGAAGTCATACCAAGAAGCTGAAAAGTCAGACTTGATGATTGCACTTGGATCCAGTCTTCAGGTTTATCCAGCTGCAGACATTCCAGCCACTGTCATCCGCAGCAAACAGAAACTGGTGATCTGCAATTTGCAGAAGACCCCACTCAGTTCACTGAGTTCGCTTCACATACACAGTCAGATAGATACAGTAATGAGAGGGCTTATGGAGAGGCTTGGCTTGGAGATTCCACCCTTCAGAGTTCAGCGTCGCTTTGCAGTTGAGACAAGTCAGGATAAAATGTTGATTGAAGGCCTTGACCTTCAAAGCAACACTCCATATTCTTTCTTAAAACAGGTATCTGTGCATATGTCACAGGAGGTTGAAGGTACAAAGAAAGttattgatgaaaaaattcTCTCTAAGGAGCCTCTGGAAATGTGTTTCAGGGGAAGCTTAATAAGTATCTCACAAGCTACTCCATTGATTGCAGAGATAGAGTTGGGTTTCCAGGGTCACTATGGTGAACCAAGCTTGTCCTTTACCAATTCTATTAGTAGCTTTGGAAAGGCCTTCTTTCATGCAGAGTATGATTTAAATAAAGGGGAGTGGTCGctgaaaaaagaatgaaaacgCATGAAAACACTGATAGACTTGATTCATTGTACTTCTACTTAtgttttaagatttttgttCTGCTAACCTGTAGAATTTCATGACTATTTAAGAGAACATTTATTAATGGATGTGATATGTTATTGAATAACATGCAAGGGTGTTGGAAAGTCTGCAGATTCTTTTATGAATAATTATTCTGTGTAAAAAAGCTTTATTACCATGTTAGGTAAGAgcattcatctttttttttcctcttgaagAAGAGGCTTGCTCAGTGATAACAGCTACAATCATTGTTGGTCCCAAGGACAATACTATGTCTACAGAACTAAACTATATTGTTGTAAGTGTATCAGGTTACAAGTCCTAAAGCTCCCTGACAGCTTTTAAAGCTCTGATAACTTTTttattgtaataaaaacaatagatgTTAGTGAGCATATTGCCATATTTGTATTAAAAATCTTGGTATTTTA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000904 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02146 all species →	SIR2	Sir2 family	Family	Interproscan
PF08603 all species →	CAP_C	Adenylate cyclase associated (CAP) C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016098 all species →	Homologous_superfamily	Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal	Interproscan
IPR003000 all species →	Family	Sirtuin family	Interproscan
IPR029035 all species →	Homologous_superfamily	DHS-like NAD/FAD-binding domain superfamily	Interproscan
IPR050134 all species →	Family	NAD-dependent sirtuin protein deacylases	Interproscan
IPR013912 all species →	Domain	Adenylate cyclase-associated CAP, C-terminal	Interproscan
IPR026590 all species →	Domain	Sirtuin family, catalytic core domain	Interproscan
IPR036223 all species →	Homologous_superfamily	Adenylate cyclase-associated CAP, C-terminal superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11085 all species →	NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0070403 all species →	Molecular Function	NAD+ binding	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX26005.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.