Gene detail

Detailed information of PFX26101.1 in Stylophora pistillata

Genomic Location: Spis.scaffold134:503847...511512
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis9252_mrna

ATGGGCAATAGATTTGCCGCCCAGATGGGAAATGTTAATGGAAATTTATGCCATATCCCCCAGAAGAGACTGAAGTTGACGTCCTCTTTATGGTATCCTGAGGCAGCCCTACACTATCCGGTGCCTGGGCTCGCTTATCACTACCTTGTGGGACATGAAAGGGGCATTGATAGTAGGGAGAGATCTATTCATGATCCTGAGGCTCAGGCGGGAATTCTACAGGCAATTAAGGAATACGATGAGTTCGAGGAATGGATTGATGGCTCTACCAAACTCCGCTATTCACCCTACAGCAGAGAGGCTCAAGCACATATTTCTGGGTGGGCCATGAAATATACCAACAACCACAACAAGTTTGTTCTCAAGAAGACGTGTGTTGGAGTACTGCTGTGTAGTAATGACTGCACACTTCCCAATGGGCTTAAAATTGTCGTCAGACCTGCTATATCTGATAAAGTTCGGGAAAGACAGATGGGCCAGAACTGTCCAAATGCCACGTGCACAGGGACTCTAGTCCATAGAAAGTGTACAGgcaACAACGGTTATCCAGTGACCCATTTTTGGGTCCATCAAGAGGATGGAATCTATTTTGAGTCCAAGGGCTCCCATGATCACTTCAGGCCTCAAGCAAGAAGAGCAACTCCAGACAGAAATTCAAATAATAAAGCTAGCAGCAGCCAGAAAGGTAACACCGAGCAAGTGGAGAACACAGAAGACAAGACAGAGAAACAAGAGAACGCTTCGACATCTTCAGATGGAAAGAAGTACAAGTCTAGAAAGAGGCAACACGCTGAAATTGCGGAAAATTTACTTACAAGGCAATCCGAGATCGCGCAGTTGTCCTCTTCGCTCTCGTCTGGCTTATTGAGAGGTTACTCAGTTGAAGAAGAGGATCTGTATATCTGTGTGACTGTACCAGAGACAGAAACACTCTTTCACAGAGCTCTGTCACACGATCAAACGAACATTACCACATGCGGGAAACTTTACTTACTCTGTCAGACATTTCAGGATGTCATTCCCGGATTTGACTTGCTGGAGACCCGTATGATATCGCGAAGCGTAATGGGATGGCCTGTAGTTATGGCAACGTTATATCGGCAAGGAACGAAGGAAGGACAAATTCACCATATGAAGACTTTGGCTCGCCTTTGTTCGACGCCAGATGAAGACTTCTTTTCGCCCAGgTGGCAGATGGTTATCCATGATTTTCCCGCTGACCAGGCACAGATGGTGACCGAGGCCATAGTAAACATGATCATCAACACGCAAGTGCAAACTCTCCTGAAGGTCTTTCAATACAAGAGCGTCAGCTCATTGTACAAAATGCTTCGAGAAAAGATCACCAGCAGTTTACAGAGCTACGACATGCACTTCGAACTGTGCAAGCGAGAGATAATCACAAGGCTACAAGATCCGCTGCTCACAATGAAGTTCCGCGACATGACGCAAAGGCTCACGGGTGAAAAATGCAGTGCGCAGGAGTATGTCAGCACGGACTGCATGCTGTCAGGAGGAGTATTTGGATCAGTCATAAGAGAGTTCTGGAATTTTTGGGGAAGTAACATTGTAGCTCCGAAAGTTTTCGCTGTCGCCGATGAGTTGGTGGGAAGAAGAGAAAAGTCAGAACAGTGGCAAAGGACGCAGACAGGGCTCACATTTCCCAGCGATCCACAGAAAGTTACTTTGCACCACATGGCTGAAGCAGTAGTCACGTGGTGTCAATATCAGATTGAGAATTGGCCGCAATCAGttgtgcAAGAAAGTATGGCAAAGTTTACACATCTTCGACCGGAAGACAACCGACTTCACTACGCTTTAGAGAGACCTGGGTCCGCGTTCCATCGGCCAGTCACATATCCCACGCTGTCCATGCCCAGATTTCATTGGTGCTGAGTGCATTGGAACCACACAATTTGaagtttttgtaatcaaatAACACTGCCGTTGATGGAACATTATTGCAACATTTTGCGCTGTGGCATGTTGATAAGTATAGtttaaaattcttcaaaaaaatttagttgaCTTTGGTTATTTTAGACAGTTCGACCGCTGTAAATGAAGTCTATTCTTGATCAGCTACCGCTGACCACAAACCTTGTGTATACTTATCGATAATGTTCTGTTTGAAATTAAAGTTCGGCATACGGGCGGGCTTCTCTTCGAGAATTCCAAGAAGAAATATGGTTTCAAGAAATTGAATTTATAAGTTTGGTTGAAACCTAAGGAAGGAGTATCAGACTTAAGTATTCAAAATCAGCAAAGAATAAATattctgttttatttgcagtttaGTATTTTACAAAGTTATTACTCGTTGTTTTATTCGTCTAATCTCTAGTTAAGCATTCAATTGTAAATAATAAATGTACCGTCTGTAATCACTGAAAAGTGGTGTTTAACAAGTTTCCATGGGTGCAATCTAGTAAAGATGACACTCTATTGCAATtttaaacagagaaaaatgatCGTTTCTCGAAGAACAAGCTGTAACTGATATGAAGTCAGCAAAAAATTTACCTtagttaaagt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03615 all species →	GCM	GCM motif protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003902 all species →	Domain	Transcription regulator GCM domain	Interproscan
IPR043021 all species →	Homologous_superfamily	GCM, small domain	Interproscan
IPR043020 all species →	Homologous_superfamily	GCM domain, large subdomain	Interproscan
IPR039791 all species →	Family	Chorion-specific transcription factor GCM	Interproscan
IPR036115 all species →	Homologous_superfamily	GCM domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12414 all species →	GLIAL CELLS MISSING RELATED/GLIDE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001228 all species →	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0042063 all species →	Biological Process	gliogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX26101.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.