Gene detail

Detailed information of PFX26155.1 in Stylophora pistillata

Genomic Location: Spis.scaffold133:42676...47281
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis9180_mrna

AAAACACGTTGCAGTCGATTGCTCGGAGAATGCGAATGGGCGTCTGGTGCCTGGCGAAGGTTATATTGTACGGTTGATTATTTTAAGGTTCCCTGGAAATGGAAGCATTAACGATTATTTGACGATTTTATCTACTTGCTTGAGAAAAGGAGCGTCCTTTAAAGCCAAGAACGAACTTTGAAGCGTTTCAAGGTGATTTCGAGATTTAAAAACTCTGCGCGAAGGCGAGGCCCCAATTAATTGACACTTCATTTTCTTGCAAGCAAGTTTGAGGAATTCAATATAAGGAACACACAACAGTCTTGGTCCACTGCAAAAGAGGAGAGGAATAATTTTCGCTGATAACAAGGATATTTCCTTGTGGATTTTATTCTGAGGCTCGGGAATAGTCGTCGTATTCTACTCGTGATGCGAGTGTGTTGATGTGGGATGTAAAAGCTGAAACCCTCTCGCCTTATTAATATTTCATTATCAAACAGCTTTGCTGCAAACACAGCTCACATGGCTTCGAAATCAAAGGAGCAGCAAAGTCCAGTGAAGCGGAAATTTACAAGCCCCGTTGGAAATCAGAAATACGTGACGAAGGGAATTTCTCCCCGTTTTAGAGcaaatttgaaagattttcGCTCGTTTGGTCCCGTGAAGCAGAGCAAACAGAAAGGAGATCTGGGACCTAATCATGGAAAAGCTTGGAGAAAGACTCAGAAGAGCCGAGCAGTGAGATTTCATTTTGGAGGGAATAGTGCAGATCCCTTGAACTTAAGCAGTTTGATAGATCGAGATCCATCAGTTGTCACCCCACAGGCCTCTCCATTGTCAATTCACAGTGCATCCCCAGTTGAGGTTTTAGAACCACATGACAAGACAGACCCTCTCAATCTAAAACGTTGTCTTCCAGAACCTGAAAACAATGTGTCTCACACAACACCAAAAAAGCGCAAGAAAAAGAATCGAGGGCATAATCATCAAGACAGGGAAAATGAAATTGGGTCAAAAGAGTATTCAGGTGTTGTCAGCCAGCAGAAGAGGCAAAAGAAGAGTCTTGTAAACACTGGTGTTTCTTGTGACAAAATTGATGTTAAATTAGGCAAAAACTGCACTGACCAGTGCAGTATACAATCAAAACAAGCCAATGATCTGTCCACAGATGAAGACTTTGAACCATCCCGTAAGAAAGCTTGCTACATTACGAAGCAGACTTCAGAAGAAGTTGATAATAAAGATGCTAACATCACTGACGTGGAACAGTCTCCTTTAGAAACCCAACCCAAAAGTGTCCTTGAGAAATCCAAAGAAATAGGAAAACCTCATGCATCACATAAAGGTAAAGACTCCAGGAGAGATAAACAAAGCTTATCAAAGGCacatgaaaaaaaggaaaaactttttatttatgGTAACTACAACAGGTATTATGGTTACAGAAACCCAAATTCCAGCCAAGATCTAAGACTGAAATGCTTTAAAAAGGAATGGTTTGAAGGAAAGGATGTTTTAGACTTGGGTTGTAATGTGGGTCATGTCACATTAACAATTGCACGGGACTTCAACCCACATGTTATCCTGGGAATGGACATTGATACTGCCCTGATTAAAGCAGCAAGGAACAATTTGCGGTATTATGTACAAAATCAAGTGTCCGTTCCTGGAAtgtcaagaaaaggaaaaaattttccagtGTCATTCTCTGTTACCAGTGGACCTTTGGCTGCACCTATAGTTCAGGGCAATGAAGAAAATCTGTCATTTCCACATAATGTCCTCTTCAAACAGGAGAACTATGTTCCTTGCAGTGGTGAAGTGCTTTCCAAACAGAAGCCAATGTATGATGTGATTTTGTGTCTGAGTGTGACGAAGTGGGTCCATTTAAACTGGGGAGATGAGGGACTCAAACTTATGTTTAAGAGAATATTCCTCAATCTACGTCCTGGTGGAAGACTTGTCCTCGAGCCTCAGCCATTCTCCTCgtacaaaaagaagaaaaatttgacaGAAAAGATCCGTGCAAATTATGATGCCATTCGCTTTCGCCCTGAACACTTTATTGACTACCTTCTCTCAGACATGGTGGGATTTGCTACTTTTGAAGTTCTTGAGATTCCACAACACAAAGCCTCTGgGTTCCAGAGGCCTCTGTATCTTCTTACAAAAGCTGCCGATAAACAAGGGGAACCTTCAGAAGAAATGTATTAGGATGCAGTAAAAATGTCATCCATGTTGTACTAGCATAGTGTGTGGAAGTGACAAAGTGTAGTTGTCTTGCATATTCCTTAAGTCAGTGGAATAAGTAACATTCTTTTGACTTGTCTCATATTCAGCCACAAACTAGAAAAGTGGAGAATAAACCTTTAAATTTCATTGATGCAATAGACCATTGCTTTGTTTCTTAGAGTGTGtgtgaaaattttgattttttttgttgggttgtttgttttttagttgtacaATTGTGTAAGTGATTGCTTCTTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06859 all species →	Bin3	Bicoid-interacting protein 3 (Bin3)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010675 all species →	Domain	RNA methyltransferase bin3, C-terminal	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR039772 all species →	Family	RNA methyltransferase Bin3-like	Interproscan
IPR024160 all species →	Domain	Bin3-type S-adenosyl-L-methionine binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12315 all species →	BICOID-INTERACTING PROTEIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0008171 all species →	Molecular Function	O-methyltransferase activity	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0017069 all species →	Molecular Function	snRNA binding	Interproscan
GO:0040031 all species →	Biological Process	snRNA modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15190	MEPCE, BCDIN3; 7SK snRNA methylphosphate capping enzyme	EC:2.1.1.-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.