Gene detail

Detailed information of PFX26187.1 in Stylophora pistillata

Genomic Location: Spis.scaffold132:460247...472442
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

SSRP1

ATGGCCACCGATGGTTTGGAGTTCAATGATATTTACCTTCTTGTAAGAGGAGCACTGAATGACGGGAGGTTAAAGTTACACAAAGGTGGAGTGATATTCAAAGCAAACAAAACAGGGAAAATAGACCAAGCCTCAGTGGCTGATATCGAATCAACTAGTTGGTTGAGAGTCGCTCGTGGTTTCGAACTGAATGTCACTTTAACAAATGAAGTGCAGTTCAAGTTTGAAGGTTTCAAAGAGGCAGATTATGACCAACTAGCATCATTCATTAAGGAAAATTTTGAAAAGGATCTGGAAGAAATTGAATTATCTGTCAAGGGCTGGAACTGGGGCACTGCTAAATTCCAAGGTTCATCTCTCTGTTTTGAAGTTGATGAAAAGCCAGCATTTATAGTTCCTCTCAAGGATGTGTCTCAAGCAACAACAGGCAAAAATGAAGTGGCACTTGAGTTTCATCAAAATGATGATGCACAGATCTGCTTGATGGAGATGAGGTTTTACATCCCAACACCTGCAGATAATCCAACAGAAGACCCAGTCAAGTTTAGAAGTATGGACATCTATGTTAATTTCCATCAAAAAGTTCTTGAAAAAGCAGACATAATTCAAGCAACAGGAGATGCCATTGTTACAATACCTGATGTTGCCTGTTTGACCCCAAGGGGCCGATACACAATGAAAGTGTTCCCTTCATTTCTTCAACTTCACGGCAAAACTTATGACTACAAGATTCCCTATACATCCGTGTTGCGTCTTTTCCTTTTACCTCACAAAGACCAAAGATTTATGTTCTTTGTGGTAAGCATGGATCCTCCAATTAAACAAGGCCAAACAAGATATCCATTCCTGATCATACAGTTTGGAAAAGATGACGACATTGATGTGAAACTAAATTTGTCAGAGGAGGAGTTAAATGAAAAATATGAAGGGAAGATAACTCAAGAAATGGATGGTCCAATCTATGAGATCGTGAGCAGACTGATGAAGGCAGTTGTCGGTAGAAGAATAACGGTACCTGGTACATTTAGAAGTCATGCGGGAATGAGCTGTATCACGTGTTCATACAGAGCTGGCAGTGGAATGCTATACCCTTTAGAAAGAGGGTTTATATTTGTGCACAAGCCCCCCGTACACATTCGCTTTGATGAGATCTCCTCAGTGAACTTTGCCCGTGTGGCAGGGGGAGGTGGTTCCAGTCGATCATTTGATTTTGAGGTGGAGACAAAGTCGGGCAGTTATGTATTTAGTAGCATTGAAAAGGAGGAATATGGTAGACTATTCGATTTTGTCAGTGGCAAGCACCTGAGGATAAAGAACACAGGAAAGGCGTCATCGAAGCAGTATAAAGACGAATTGATGCCCGGCTCAGACGAAGATTCTCACGATGCATATTTGGAGCAGATGAAGGCAGAGGGGGCTGAGAAATACGAAGAGTCGGAGTCAAGCGAAGATGAGTCAGACGAGTCCTTCAATCCCGGAAGCGGCGGAGAAGATCAGGATTTGAAAGAGGAATTCGAGAGCGACCCGTCTTCTTCAGAAAGTGGAGGAGAATCTGAAGAAGAAAGCAAGCCGAAGCACAAAGAAAAGGAAAAGAAGAAGAAGTCACCGGAAAAGAAAAGAAAAGCTGAAAAATCCAAGAGCCCTGCACCGAAAAAGAAGGCCAAGATTTCATCGCTGTACAAGCAAGCAAGAGCCGATCTGAAACAGAGCTTGGAGCCTCGTTCATCTCCGTCATCATCATGCTCTATTTTCCCAGCAGGAATTATTCGAAGTAGAGAGTGTGATATAGTTTATAGAAGAGTTTCCTATGAATGTCGTTCAACAAAAACCAAAGTTGTCGCAAGAGCCAATCAAAGCAAAGGCGAATATTGTAAGGAACCAATGAGAGCTCAAAGTGAAAACAAGCCGACCGTCCGAAGCGCGGGAAAACGCGGCTGCCCAAATCATGATTGGGCGGATGAACCACCTCAAGGCAAACGGAAAAAGAAAGCGAAGAAGGACGCTGATGCCCCCAAGCGGCCGATGTCTGCCTACATGTTATGGCTCAATGAAATTAGGGAACAAATTAAGCAGGAAAACCCTGGAATCTCGGTGACAGAGCTGTCCAAAGTGGCGGGAGAGAAGTGGAAGAAAATTGATGATAAAACAAAATGGCAGGAAATGGCCAAAGAAGCGAAGAAGAAATACGACGAAGCAATGAAGGTGTACAAAGAGAAGAAAGCTAACGAACCAAATGATAGTCCAGATGAGAAACCGAGTAAGAAGGGTTCCGTAAAGGAGTTCTTTAATAAGAAAGGAGATAAAAAGAAAACTGTTTCTCCTCGGAAAGCTGGCGGTGGCGAGTCACAGAAATTCAAGAGCGCGGAATTTGTAGAAACTGACGATAGCTCCTCAGAAGAGGAAGAGAAGAAAAGCAAACCTAAACCCAAACTCAAAGCCAAACCTAAAGCAAAATCTAAACCGGAAAAATCCAAGAGCAAAAGCAAAAAGGAATCGGAGGAAGAAGAGTCTGAGGAAGAAGAAGATGAAGAAGAAGAAGAATCTGAAGACGTGGATATAAGTGAAGGTTCAGATTCCGACTGA

Transcript

rna-Spis9164_mrna

atggCCACCGATGGTTTGGAGTTCAATGATATTTACCTTCTTGTAAGAGGAGCACTGAATGACGGGAGGTTAAAGTTACACAAAGGTGGAGTGATattcaaagcaaacaaaacaggGAAAATAGACCAAGCCTCAGTGGCTGATATCGAATCAACTAGTTGGTTGAGAGTCGCTCGTGGTTTCGAACTGAATGTCACTTTAACAAATGAAGTGCAGTTCAAGTTTGAAGGTTTCAAAGAGGCAGATTATGACCAACTAGCATCATTCattaaggaaaattttgaaaaggatcTGGAAGAAATTGAATTATCTGTCAAGGGCTGGAACTGGGGCACTGCTAAATTCCAAGGTTCATCTCTCTGTTTTGAAGTTGATGAAAAGCCAGCATTTATAGTTCCTCTCAAGGATGTGTCTCAAGCAACAACAGGCAAAAATGAAGTGGCACTTGAGTTTCATCAAAATGATGATGCACAGATCTGCTTGATGGAGATGAGGTTTTACATCCCAACACCTGCAGATAATCCAACAGAAGACCCAGTCAAGTTTAGAAGTATGGACATCTATGTTAATTTCCAtcaaaaagttcttgaaaaagcAGACATAATTCAAGCAACAGGAGATGCCATTGTTACAATACCTGATGTTGCCTGTTTGACCCCAAGggGCCGATACACAATGAAAGTGTTCCCTTCATTTCTTCAACTTCACGGCAAAACTTATGACTACAAGATTCCCTATACATCCGTGTTGCGTCTTTTCCTTTTACCTCACAAAGACCAAAGATTTATGTTCTTTGTGGTAAGCATGGATCCTCCAATTAAACAAGGCCAAACAAGATATCCATTCCTGATCATACAGTTTGGAAAAGATGACGACAttgatgtgaaactaaatttgTCAGAGGAGgagttaaatgaaaaatatgaaggGAAGATAACTCAAGAAATGGATGGTCCAATCTATGAGATCGTGAGCAGACTGATGAAGGCAGTTGTCGGTAGAAGAATAACGGTACCTGGTACATTTAGAAGTCATGCGGGAATGAGCTGTATCACGTGTTCATACAGAGCTGGCAGTGGAATGCTATACCCTTTAGAAAGAGGGTTTATATTTGTGCACAAGCCCCCCGTACACATTCGCTTTGATGAGATCTCCTCAGTGAACTTTGCCCGTGTGGCAGGGGGAGGTGGTTCCAGTcgatcatttgattttgaggTGGAGACAAAGTCGGGCAGTTATGTATTTAGTAGCATTGAAAAGGAGGAATATGGTAGACTATTCGATTTTGTCAGTGGCAAGCACCTGAGGATAAAGAACACAGGAAAGGCGTCATCGAAGCAGTATAAAGACGAATTGATGCCCGGCTCAGACGAAGATTCTCACGATGCATATTTGGAGCAGATGAAGGCAGAGGGGGCTGAGAAATACGAAGAGTCGGAGTCAAGCGAAGATGAGTCAGACGAGTCCTTCAATCCCGGAAGCGGCGGAGAAGATCAGGATTTGAAAGAGGAATTCGAGAGCGACCCGTCTTCTTCAGAAAGTGGAGGAGAATCTGAAGAAGAAAGCAAGCCGAAgcacaaagaaaaggaaaagaagaagaagtcaccggaaaagaaaagaaaagctgaaaaatcCAAGAGCCCTGCACCGAAAAAGAAGGCCAAGATTTCATCGCTGTACAAGCAAGCAAGAGCCGATCTGAAACAGAGCTTGGAGCCTCGTTCATCTCCGTCATCATCATGCTCTATTTTCCCAGCAGGAATTATTCGAAGTAGAGAGTGTGATATAGTTTATAGAAGAGTTTCCTATGAATGTCGttcaacaaaaaccaaagttgtCGCAAGAGCCAATCAAAGCAAAGGCGAATATTGTAAGGaaccaatgagagctcaaagtgaaaacaagccgACCGtccgaagcgcgggaaaacgcggctgCCCAAATCATGATTGGGCGGATGAACCACCTCAAGGCAAACGGAAAAAGAAAGCGAAGAAGGACGCTGATGCCCCCAAGCGGCCGATGTCTGCCTACATGTTATGGCTCAATGAAATTAGGGAACAAATTAAGCAGGAAAACCCTGGAATCTCGGTGACAGAGCTGTCCAAAGTGGCGGGAGAGAAGTGGAAGAAAATTGATGATAAAACAAAATGGCAGGAAATGGCCAAAGAAGCGAAGAAGAAATACGACGAAGCAATGAAGGTGTACAAAGAGAAGAAAGCTAACGAACCAAATGATAGTCCAGATGAGAAACCGAGTAAGAAGGGTTCCGTAAAGGAGTTCTTTAATAAGAAAggagataaaaagaaaactgtttctcCTCGGAAAGCTGGCGGTGGCGAGTCACAGAAATTCAAGAGCGCGGAATTTGTAGAAACTGACGATAGCTCCTCagaagaggaagagaagAAAAGCAAACCTAAACCCAAACTCAaagccaaacctaaagcaaaatCTAAACCGGAAAAATCCAAGagcaaaagcaaaaaggaaTCGGAGGAAGAAGAGTCtgaggaagaagaagatgaagaagaagaagaatctgAAGACGTGGATATAAGTGAAGGTTCAGATTCCGACTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17292 all species →	POB3_N	POB3-like N-terminal PH domain	Domain	Interproscan
PF21103 all species →	PH1_SSRP1-like	SSRP1 PH domain	Domain	Interproscan
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF03531 all species →	SSrecog	Structure-specific recognition protein (SSRP1)	Domain	Interproscan
PF08512 all species →	Rttp106-like_middle	Histone chaperone Rttp106-like, middle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR050454 all species →	Family	RTT106/SSRP1 Histone Chaperone/FACT Complex	Interproscan
IPR035417 all species →	Domain	FACT complex subunit SSRP1/POB3, N-terminal PH domain	Interproscan
IPR048993 all species →	Domain	FACT complex subunit SSRP1-like, first PH domain	Interproscan
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR013719 all species →	Domain	Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domain	Interproscan
IPR000969 all species →	Family	FACT complex subunit SSRP1/POB3	Interproscan
IPR024954 all species →	Domain	SSRP1, dimerization domain	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR038167 all species →	Homologous_superfamily	SSRP1 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45849 all species →	FACT COMPLEX SUBUNIT SSRP1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan
GO:0035101 all species →	Cellular Component	FACT complex	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:1902275 all species →	Biological Process	regulation of chromatin organization	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09272	SSRP1, POB3; FACT complex subunit SSRP1/POB3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.