Gene detail

Detailed information of PFX26378.1 in Stylophora pistillata

Genomic Location: Spis.scaffold128:211762...237258
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

NVL

ATGGAAGTAGACTCGAAAGAAGTGTGTTTTATAGACTGCCACGCGCATGTATCAGCCAAAGAATTTAGTGAGGCTGGTGTAAGAGCTATAGTTGGTGTGACAGAGTTCAAAACAGAATTCACTGGAATGCTTGAACTTCATGAGAGGTGTGTTAAAAATGTTGGCTTGGATTTTACTCCACGCTTTATAAGCAAAGAGGAGGATAAAGATGTTCAAAGAGAAGTGTTCAGTCGACAGATAAAGCTTGCCTTAGAACTTGATCTTCCTTTGTATGTGGGCGCCAGGAATGTCTTGCTTCATGCCTTTGATGGAAAGCCTTCCAATGCCCTTAAGGGAGTTCAACAAGGCTACTACTTTTCAATCCCACCATCTATAGCTCGCTCCCCCCAGAAAGAGAAGCTTGTGAAAAATGTTCCACTTTCAAATCTTCTCCTGGAAACTGATTCACCAGCCTTGGCAGCTGAAAAACAGGATGTCTGGAATCAGCTTGACCTAAATCAGATGTTCGGGATGACGCGTGATTTGGGTCGAAAGAAACAGGATCGCCGAAGAAGTAGCATGAAACTTCCTAAAGGTGCTTACACTTTAGATAACCGACTTGTTCCACGAGTGAAAGAGTACCTGAACCAGTTTCGGAAAGGACACCATCCAGACATTGAAGAACTGGTGAACCACTTACAGACAAGATATAATGAATATTCTAGAAGAAAAAGAAGAGCATTTAAGCAATCTGTGGAGAAAGTTTGTGATGCTATAAGTAGGGAGCAAGAGGAAGACGAACACCTCCAGCAACTGGAAGAAAGGTTTCTTCAAAAAAGAAAAAATTCACCCAACCTCAGGAATATTAAAGAAGATGATGACGATGGAGAAGAGCAAAGTGATAATGACAGTATGGATGAATCCAGTGATAGTGAGTTCTCTCTTGGAGATGAACCACTAATGGAGGTGCATGTTACAAACATGATGAATCAGTCCATGCAATCAATGTACAAAGCCACAAGTTCAGGTCAAAACTCTGAAGACGAGGGCGAGCTTGATCAGATACCAGATCCTACCAAAGCAAATGAAATATTACCAGGTACTGCTGTTCCAGGTAGTGAAAGTATGTATAAGCATGAAGAGAAGTCAAGCAACAAGACAAACACTTCAGATGTCAACCAAACCACAATGAAAGATATTGATCTCTTATCTACAACTGTCAGTTATTTAAGAGCATCATTTTGCAAGTCTCATTGTAGCCTGGCAGAGTTCTGCGAATTTGAGCCCACCCAATCATCAGTAAAATTCTCAGACATTGGAGGCTGTGATGACACTGTGGAACAAGTTTGTAAACTGCTGGTTCACATGAAGCACCCTGAAGTGTTCCGCACACTTGGGGTGACCCCACCTAGAGGTTTCCTCCTTCATGGTCCCCCCGGGTGTGGCAAGACCTTACTAGCTCATGCTATTGCTGGGGAGTTGGAAATGCCTTTCATCAAACTGGCAGCTACAGAAATTGTGTCAGGAGTGTCTGGTGAATCAGAAGGGAAAGTCAGAGAGTTATTTTCACGTGCTGTGGCCCATTCTCCATGTGTGTTGTTCCTGGATGAAATAGATTCTATCACACCCAAAAGAGAAACAGCTTCTAAAGACATGGAACGAAGAATTGTTTCACAGCTTTTGACTTGCATGGATGACCTGAACAGCAACTCAGATGCTCAAGTAATGGTTATAGGAGCAACTAATAGGCCTGACTCCCTTGATCCGGCCCTGCGTCGTGCTGGCCGGTTTGATCGGGAAATCTCCATGGGTATTCCTGATGAAAAGGCAAGAGAGAGGATTTTGAGAGTTCTTTGCCAGAAATTGAGGCTAGAAGACAATTTCTGTTTTTCTGTGCTGGCTCGTCTTACTCCAGGATTTGTTGGAGCAGATCTCATGTCCCTCACGAGAGAAGCAGCCTTAATAGCAGTTAACAGAATATTTCAAGAACTTGAAAGGAATGCTGCAAACAAGTGTGAAACAAATGAGACGATGGACACAACTGAGGAACAGAAAGAGTCTCACGGGGAAAACGAGACAAAGGAATCGTCTGATACTGTTCCTAGATCATTCAGTGTGACTGAGTGGCTTAAAGAGGAATCACCGCTGACAGAGAATGAGCTAAAGAAGCTTTGTATTAACATGAACGATTTCAAGGCAGCCTTGTCACAAGTCCAACCATCAGCGAAAAGGGAAGGGTTTGCTACTATACCCGGTGTGACATGGGAAGATGTCGGAGCACTCAAAGATGTCAGACAAGAACTTACCATGGCTATTCTGGCTCCAGTGAAATACCCAGGAGAATTCCAAGCGCTCGGCCTCACTCACCCTCCAGGGATCCTACTGGCTGGACCACCAGGTTGTGGGAAAACTCTTCTAGCAAAGACAGACACAGACAGACAGACAGACACAGACAGACAGACAGACACAGACAGACAGACAGATAGACACATACAGACAGACAGACACAGACAGACAGACACAGACAGACACAGACAGACAGACACAGATAGACAGACACAGATAGACAGACACAGACAGACAGACACAGATAGACAGACACAGACAGACAGACACAGACAGACAGACACAGACAGACAGACACAGATAGACAGACACAGACAGACACACACAGACGGACAGAGACAGACAAACAGACAACACAGACGGGCAGGCGCAGACAGACAGAAGATAGACAGACAGACAGACACACAGCAGATAGACAGACACAGACAGACAGGCACAAACAGACAGACACAGACAGATAGACACAGACAGACAGAAACAGACAGACACAGACAGACAAAGATAGACAGAGACAGACAAACAGACGACACAGACGGGCAGGCACAGACAGCAGATTGA

Transcript

rna-Spis8959_mrna

ATGGAAGTAGACTCGAAAGAAGTGTGTTTTATAGACTGCCACGCGCATGTATCAGCCAAAGAATTTAGTGAGgcTGGTGTAAGAGCTATAGTTGGTGTGACAGAGTTCAAAACAGAATTCACTGGAATGCTTGAACTTCATGAGAGGtgtgttaaaaatGTTGGCTTGGATTTTACTCCACGCTTTATAAGCAAAGAGGAGGATAAAGATGTTCAAAGAGAAGTGTTCAGTCGACAGATAAAGCTTGCCTTAGAACTTGATCTTCCTTTGTATGTGGGCGCCAGGAATGTCTTGCTTCATGCCTTTGATGGAAAGCCTTCCAATGCCCTTAAGGGAGTTCAACAAGGCTACTACTTTTCAATCCCACCATCTATAGCTCGCTCCCCCCAGAAAGAGAAGCTTGTGAAAAATGTTCCACTTTCAAATCTTCTCCTGGAAACTGATTCACCAGCCTTGGCAGCTGAAAAACAGGATGTCTGGAATCAGCTTGACCTAAATCAGATGTTCGGGATGACGCGTGATTTGGGTCGAAAGAAACAGGATCGCCGAAGAAGTAGCATGAAACTTCCTAAAGGTGCTTACACTTTAGATAACCGACTTGTTCCACGAGTGAAAGAGTACCTGAACCAGTTTCGGAAAGGACACCATCCAGACATTGAAGAACTGGTGAACCACTTACAGACAAGATATAATGAATATtctagaagaaaaagaagagcaTTTAAGCAATCTGTGGAGAAAGTTTGTGATGCTATAAGTAGGGAGCAAGAGGAAGACGAACACCTCCAGCAACTGGAAGAAAGGtttcttcaaaaaagaaaaaattcacccaacctcaggaATATTAAAGAAGATGATGACGATGGAGAAGAGCAAAGTGATAATGACAGTATGGATGAATCCAGTGATAGTGAGTTCTCTCTTGGAGATGAACCACTAATGGAGGTGCATGTTACAAACATGATGAATCAGTCCATGCAATCAATGTACAAAGCCACAAGTTCAGGTCAAAACTCTGAAGACGAGGGCGAGCTTGATCAGATACCAGATCCTACcaaagcaaatgaaatattacCAGgtaCTGCTGTTCCAGGTAGTGAAAGTATGTATAAGCATGAAGAGAAGTCAAGCAACAAGACAAACACTTCAGATGTCAACCAAACCACAATGAAAGATATTGATCTCTTATCTACAACTGTCAGTTATTTAAGAGCATCATTTTGCAAGTCTCATTGTAGCCTGGCAGAGTTCTGCGAATTTGAGCCCACCCAATCATCAGTAAAATTCTCAGACATTGGAGGCTGTGATGACACTGTGGAACAAGTTTGTAAACTGCTGGTTCACATGAAGCACCCTGAAGTGTTCCGCACACTTGGGGTGACCCCACCTAGAGGTTTCCTCCTTCATGGTCCCCCCGGGTGTGGCAAGACCTTACTAGCTCATGCTATTGCTGGGGAGTTGGAAATGCCTTTCATCAAACTGGCAGCTACAGAAATTGTGTCAGGAGTGTCTGGTGAATCAGAAGGGAAAGTCAGAGAGTTATTTTCACGTGCTGTGGCCCATTCTCCATGTGTGTTGTTCCTGGATGAAATAGATTCTATCACACCCAAAAGAGAAACAGCTTCTAAAGACATGGAACGAAGAATTGTTTCACAGCTTTTGACTTGCATGGATGACCTGAACAGCAACTCAGATGCTCAAGTAATGGTTATAGGAGCAACTAATAGGCCTGACTCCCTTGATCCGGCCCTGCGTCGTGCTGGCCGGTTTGATCGGGAAATCTCCATGGGTATTCCTGATGAAAAGGCAAGAGAGAGGATTTTGAGAGTTCTTTGCCAGAAATTGAGGCTAGAAGacaatttctgtttttctgtgCTGGCTCGTCTTACTCCAGGATTTGTTGGAGCAGATCTCATGTCCCTCACGAGAGAAGCAGCCTTAATAGCAGTTAACAGAATATTTCAAGAACTTGAAAGGAATGCTGCAAACAAGTGTGAAACAAATGAGACGATGGACACAACTGAGGAACAGAAAGAGTCTCACGGGGAAAACGAGACAAAGGAATCGTCTGATACTGTTCCTAGATCATTCAGTGtgactgagtggcttaaaGAGGAATCACCGCTGACAGAGAATGAGCTAAAGAAGCTTTGTATTAACATGAACGATTTCAAGGCAGCCTTGTCACAAGTCCAACCATCAGCGAAAAGGGAAGGGTTTGCTACTATACCCGGTGTGACATGGGAAGATGTCGGAGCACTCAAAGATGTCAGACAAGAACTTACCATGGCTATTCTGGCTCCAGTGAAATACCCAGGAGAATTCCAAGCGCTCGGCCTCACTCACCCTCCAGGGATCCTACTGGCTGGACCACCAGGTTGTGGGAAAACTCTTCTAGCAAAGacagacacagacagacagacagacacagacagacagacagacacagacagacagacagatagacacatacagacagacagacacagacagacagacacagacagacacagacagacagacacagatagacagacacagatagacagacacagacagacagacacagatagacagacacagacagacagacacagacagacagacacagacagacagacacagatagacagacacagacagacacacACAGACGGACagagacagacaaacagacaacACAGACGGGCAGGCGCAGACAGACAgaagatagacagacagacagacacacagcagatagacagacacagacagacaggcacaaacagacagacacagacagatagacacagacagacagaaacagacagacacagacagacaaagATAGACagagacagacaaacagacgaCACAGACGGGCAGGCACAGACAGCAGAttga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01026 all species →	TatD_DNase	TatD related DNase	Domain	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF16725 all species →	Nucleolin_bd	Nucleolin binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001130 all species →	Family	3'-5' ssDNA/RNA exonuclease TatD-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR050168 all species →	Family	AAA ATPase domain-containing protein	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR031996 all species →	Domain	NVL2, nucleolin binding domain	Interproscan
IPR038100 all species →	Homologous_superfamily	NVL2, N-terminal domain superfamily	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR018228 all species →	Conserved_site	Deoxyribonuclease, TatD-related, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23077 all species →	AAA-FAMILY ATPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016788 all species →	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan
GO:0051973 all species →	Biological Process	obsolete positive regulation of telomerase activity	Interproscan
GO:1990275 all species →	Molecular Function	preribosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX26378.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.