Gene detail

Detailed information of PFX26385.1 in Stylophora pistillata

Genomic Location: Spis.scaffold127:118383...129030
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Trit1

ATGGCGGCCGGCGTGGCTGGTGTTCGTCGCTTGCCACTTGTTGTTATTTTGGGTTCTACTGGGACAGGAAAATCCAAACTAGCCATCGAAATAGGTAAAAAAATTGGTGGAGAAATCATTAGTGCTGATTCGATGCAAGTTTACAAGGGTCTGGACATCATAACGAATAAAGTAACTGCCGAAGAACAGTCGCAGTGCCCTCACCACCTGATTGATTTTGTGTCACCGCTGAAGGAATTCTCTGTAGTAGAATTTCGAAATATGGCTTTACCTTTGATCGATGACATCAAAAGTAGGGATAAAATTCCGATAGTTGTTGGTGGCACAAATTATTACATAGAATCCGTGTTGTGGGATGTACTGATAGATGAAGAAGACAGAAACGTCAATTTGTCTAGCGGCGAAGAACTTGATGAACCTGAGGGCCAGGGTCCTTCGAGGAAAATAAAAAAACGAAAGCTTCTTGAAAGCACAGGTGTTTTAGGCTCTACCACAATATATGATGAAGCAGTAGTGTCTCCAGGAGAGGCATCCCAAAGGTCAAAGCGTTCTGAGGAAAGATCTAAACTTCAGTTTTTTACTGATGCTGAAGCAGGAAGAGAAGATGAGCACAGCTGTAAGACAAGCCTTTATGATAAGCTCAGGGAGGTTGATCCAGCCATGGCAGACAAGCTACACCCAAGTGATTCCCGGAAAATTGCACGTAGTCTACAGATCTATGAACAACATGGAAAACCACACAGCACAATTATACAAGAACAGCAACAAAAGCCTGGAGGCAATGCATTTGGTGGACCTCAGAGATATGAGGATGTCTGTGTGTTTTGGCTCCAGTGCCAAAGAGGCATCCTGAATGAGAGGTTAGATAAAAGAGTCAGTGAAATGCTAGAAAGAGGCTTGATTGAAGAACTGTTGAATTTTCACAGAGAATATAACCATGTGTTAGCAGGAAAAGATACTGTAGCCAAATACACTGAGGGCATATTTCAGTCCATTGGATTTAAGGAATTTCATGAGTTTCTTGTCAAACAACAAGGCAAAGATTTTGATGAAAGCAGTACATCAGCAGAGGACAAAGCACTTCTTAAAATTGGGCTTGATAACATGAAGACAGTCACACGAAGATATGCAAAAAAGCAAATGACATGGGTACGAAATCGCTTCTTAGCAAGACCAGTTAGTTCTGCCCCTGATGTATATGGTCTAGATGCAACAAATCTTACAGACTGGGACAACAGTGTCCTTCAAAATGCACTAGACATCTTAGATAGATTAATCTTTGGTAAAAGACCAGCTATTGAACCACTTCCACGGGTGATCATTCAAGATGATCGTCATGCCAGACATGTGTGTGAGATTTGTGAAAACCGTATTATTTTGGGTGAAGAGAACTGGAAGAAACACTTACTATCTAAAGCACATAAATGGCATGTTAAAAGGAAAGATAGGGTGACCTTGAAAAATACCGGAAAATTCAAAATGGCGTCGGCACATCGAGGGAATTTTGTGTGGTTAGAAACGCTTCGTAAAGCAAGAAAGACGAGCCTTGTTCAGGATGGTCGGCAAAAAGTTCATTACACTTTTCCGGATGGAACAGAAATGGTAGAAGAATATGAGGTAACCTCTGGGGAACTCTTGGTGAGGAAATGGAAGAAAAAATCTACTCTTGGTAGAGAAGGGAAATGGGATTATGAGATTGGTGAGGACCTCAGGCCAGTTAATTTGGATATGGAAAATATCAGTGAAAGTAGAGGAAATCCCATGTTCACAAGAAAAGACAACAGTAAAGCCTTTCAGTGGAGAATAAGAAACCTTCCATATCCATTGGAAGTATACAGTGTGACAGTTGATGATGACAAACACTCTATTACAATAAGGACAAGCAACAAAAAATACTATAAAAAATTTCAAATTCCTGACATGGAGAGAGCAAAAGTGGATTTAGAACAGAGTGCAATATCTAAAGCCCATGCCAACAACACACTCATAATCACAAGACTACGCTTGGAAGATTTCGACTCGGAACACTCGGATTCTTCCGTTGAAGAAGTGAACGAAACCACTGGAGGCTTGGATAGTGGTGAAGAAAGCGATTTGGATCGCCTTCTGGCCAATGAATCAGATATTTCAAGCGATAGTGAATTCCCTTTCACTCTCCACTGGTCAGAGAGTGAAATGGAAGTGGAGGATGAAGGGGTGGCTGATCCTTCAGTTCCCCTACCAGATGTCCCTCCTCCAGGACCAGCAAACACCAATGCAGCCTCATGTTCCTCTAATGCTTCATCATTCTATGGTGGAGCAGCCAGACCGCATCCACCTTCCCATCGTGGTGCCCCAACTCTTTCCTCTCCGCGTCGTGGTCGTGGGGTGGGTCGTAGTCGTGGTCGTGGTCGTGGGGTTGGTCGTGCTCGTGTGCGAGGAGGACGGGCAAGAGGAGATGGTGCACGTGGAAGGGCAAGTGGTCGTGGTCAAGTGGCACGTGGGCCTGCAGTGCAACTGCACGAGGGATATGCTGATGATGATCTTGGAAATCAGCCGCTGCCATTTCGTCCAGCCCATCCCGTCGGCGTTCACCTTGGCCAGCGATTAGTGCGTGGTGCCTTTACAAGAGCTGTTGAGTTTTTTAATTTATTTTTTACTGTAGAGTTGATCAATAATATTGTAAGTCATACAAATAGTTATGCTTATGAGCATATTGAAACCCACCAGTCCTATGCAAAAAGGGACGGAAGCTGGCTAGAGTGCACTGCAGATGAGATCAGACGGTTAATAGCCATCCTCATCTACTTTGGGCTTGTAAGAGTCAGTGATGTCGTAGATAATTACTGGAGTAGAAAATCTCTTTATCACGGCTTGTGGGGAAAATGTTTTATGCCTTTGATACGCTTCAAAGGCCTAATGGCGATGCTTCATGTTGTTGACCCGGCTTGTGAAACAGAAGCCAAAGAATCAAAGCGATTGTTCGGGGATTTGATCTCAGCATCTAAATATTCGTATGTAACGGTGTGCCGGTCCCCAAACACTTCGTACAAAAAGCCCCCTTTGATTCTTGAGCAAGAAAAGCTTATCCGACAGGAACTGGTCAAAATGAAATCAAGTCGTGACGGGGATGTGGAGTGTACGCCAAGCTGA

Transcript

rna-Spis8925_mrna

atggcggccggcGTGGCTGGTGTTCGTCGCTTGCCACTTGTTGTTATTTTGGGTTCTACTGGGACAGGAAAATCCAAACTAGCCATCGAAATAGGTAAAAAAATTGGTGGAGAAATCATTAGTGCTGATTCGATGCAAGTTTACAAGGGTCTGGACATCATAACGAATAAAGTAACTGCCGAAGAACAGTCGCAGTGCCCTCACCACCTGATTGATTTTGTGTCACCGCTGAAGGAATTCTCTGTAGTAGAATTTCGAAATATGGCTTTACCTTTGATCGATGACATCAAAAGTAGGGATAAAATTCCGATAGTTGTTGGTGGCACAAATTATTACATAGAATCCGTGTTGTGGGATGTACTGATAGATGAAGAAGACAGAAACGTCAATTTGTCTAGCGGCGAAGAACTTGATGAACCTGAGGGCCAGGGTCCTtcgaggaaaataaaaaaacgaaAGCTTCTTGAAAGCACAGGTGTTTTAGGCTCTACCACAATATATGATGAAGCAGTAGTGTCTCCAGGAGAGGCATCCCAAAGGTCAAAGCGTTCTGAGGAAAGATCTAAACTTCAGTTTTTTACTGATGCTGAAGCAGGAAGAGAAGATGAGCACAGCTGTAAGACAAGCCTTTATGATAAGCTCAGGGAGGTTGATCCAGCCATGGCAGACAAGCTACACCCAAGTGATTCCCGGAAAATTGCACGTAGTCTACAGATCTATGAACAACATGGAAAACCACACAGCACAATTATACAAGAACAGCAACAAAAGCCTGGAGGCAATGCATTTGGTGGACCTCAGAGATATGAGGATGTCTGTGTGTTTTGGCTCCAGTGCCAAAGAGGCATCCTGAATGAGAGGTTAGATAAAAGAGTCAGTGAAATGCTAGAAAGAGGCTTGATTGAAGAACTGTTGAATTTTCACAGAGAATATAACCATGTGTTAGCAGGAAAAGATACTGTAGCCAAATACACTGAGGGCATATTTCAGTCCATTGGATTTAAGGAATTTCATGAGTTTCTTGTCAAACAACAAGGCAAAGATTTTGATGAAAGCAGTACATCAGCAGAGGACAAAGCACTTCTTAAAATTGGGCTTGATAACATGAAGACAGTCACACGAAGATATGCAAAAAAGCAAATGACATGGGTACGAAATCGCTTCTTAGCAAGACCAGTTAGTTCTGCCCCTGATGTATATGGTCTAGATGCAACAAATCTTACAGACTGGGACAACAGTGTCCTTCAAAATGCACTAGACATCTTAGATAGATTAATCTTTGGTAAAAGACCAGCTATTGAACCACTTCCACGGGTGATCATTCAAGATGATCGTCATGCCAGACATGTGTGTGAGATTTGTGAAAACCGTATTATTTTGGGTGAAGAGAACTGGAAGAAACACTTACTATCTAAAGCACATAAATGGCATGTTAAAAGGAAAGATAGGGTGACCTTGAAAAATACcggaaaattcaaaatggcgtcggCACATCGAGGGAATTTTGTGTGGTTAGAAACGCTTCGTAAAGCAAGAAAGACGAGCCTTGTTCAGGATGGTCGGCAAAAAGTTCATTACACTTTTCCGGATGGAACAGAAATGGTAGAAGAATATGAGGTAACCTCTGGGGAACTCTTGGTgaggaaatggaagaaaaaatctACTCTTGGTAGAGAAGGGAAATGGGATTATGAGATTGGTGAGGACCTCAGGCCAGTTAATTTGGATATGGAAAATATCAGTGAAAGTAGAGGAAATcCCATGTTCACAAGAAAAGACAACAGTAAAGCCTTTCAGTGGAGAATAAGAAACCTTCCATATCCATTGGAAGTATACAGTGTGACAGTTGATGATGACAAACACTCTATTACAATAAGGACAAGCAACAAAAAATActataaaaaatttcaaattcctGACATGGAGAGAGCAAAAGTGGATTTAGAACAGAGTGCAATATCTAAAGCCCATGCCAACAACACACTCATAATCACAAGACTACGCTTGGAAGATTTCGACTCGGAACACTCGGATTCTTCCGTTGAAGAAGTGAACGAAACCACTGGAGGCTTGGATAGTGGTGAAGAAAGCGATTTGGATCGCCTTCTGGCCAATGAATCAGATATTTCAAGcgATAGTGAATTCCCTTTCACTCTCCACtggtcagagagtgaaatggaAGTGGAGGATGAAGGGGTGGCTGATCCTTCAGTTCCCCTACCAGATGTCCCTCCTCCAGGACCAGCAAACACCAATGCAGCCTCATGTTCCTCTAATGCTTCATCATTCTATGGTGGAGCAGCCAGACCGCATCCACCTTCCCATCGTGGTGCCCCAACTCTTTCCTCTCCGCGTCGTGGTCGTGGGGTGGGTCGTAGTCGTGGTCGTGGTCGTGGGGTTGGTCGTGCTCGTGTGCGAGGAGGACGGGCAAGAGGAGATGGTGCACGTGGAAGGGCAAGTGGTCGTGGTCAAGTGGCACGTGGGCCTGCAGTGCAACTGCACGAGGGATATGCTGATGATGATCTTGGAAATCAGCCGCTGCCATTTCGTCCAGCCCATCCCGTCGGCGTTCACCTTGGCCAGCGATTAGTGCGTGGTGCCTTTACAAGAGCTGTtgagttttttaatttattttttactgtaGAGTTGATCAATAATATTGTAAGTCATACAAATAGTTATGCTTATGAGCATATTGAAACCCACCAGTCCTATGCAAAAAGGGACGGAAGCTGGCTAGAGTGCACTGCAGATGAGATCAGACGGTTAATAGCCATCCTCATCTACTTTGGGCTTGTAAGAGTCAGTGATGTCGTAGATAATTACTGGAGTAGAAAATCTCTTTATCACGGCTTGTGGGGAAAATGTTTTATGCCTTTGATACGCTTCAAAGGCCTAATGGCGATGCTTCATGTTGTTGACCCGGCTTGTGAAACAGAAGCCAAAGAATCAAAGCGATTGTTCGGGGATTTGATCTCAGCATCTAAATATTCGTATGTAACGGTGTGCCGGTCCCCAAACACTTCGTACAAAAAGCCCCCTTTGATTCTTGAGCAAGAAAAGCTTATCCGACAGGAACTGGTCAAAATGAAATCAAGTCGTGACGGGGATGTGGAGTGTACGCCAAGCTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01715 all species →	IPPT	IPP transferase	Domain	Interproscan
PF13843 all species →	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF14913 all species →	DPCD	DPCD protein family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039657 all species →	Family	Dimethylallyltransferase	Interproscan
IPR026224 all species →	Family	Protein DPCD	Interproscan
IPR029526 all species →	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR018022 all species →	Family	IPP transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11088 all species →	TRNA DIMETHYLALLYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006400 all species →	Biological Process	tRNA modification	Interproscan
GO:0052381 all species →	Molecular Function	tRNA dimethylallyltransferase activity	Interproscan
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00791	miaA, TRIT1; tRNA dimethylallyltransferase	EC:2.5.1.75	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.