Gene detail

Detailed information of PFX26507.1 in Stylophora pistillata

Genomic Location: Spis.scaffold124:258054...277104
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

usp20

ATGCCGTCTTGTCCTCATTTGAACTCTATCGATGAAGTAAATGTAGAAGCGATAAAGGGGAAAATGAAAGAGGCAGCTGTACCATTTGTGGTGTATCATAATCAGAAGGAGCTTAGATCATCAGAAAGTCAGTCACTAGGGTGTGGACGATTTGGTAACAATCACATTGAGCTTCACAATCAGACTCATGAGGTCTTGGATATGGAAGATGCACTAGAATTAGAGAAAGGCCTAAAGCCAAGAGGTTTATGTGGTTTGTCAAACCTTGGAAATACATGTTACATGAATGCTGCTCTTCAGGCTCTATCAAACTGTCCACCCCTTACTCAATATTTCTTGGAATGTGGAAGCTTTGCAAAAGAAACAAAGAACTCTTCTGTCAGCAGAAATTTTTCAATACTAGTCAATGAGATATGGTCAAGGAAAAGACCAAAGTATGTTGTGCCATCTCAGCTGCTTCGTAGTGTTCGGCAGATCAACTCTCAGTTCAGAGGTTATGGGCAGCAGGATGCTCAGGAATTCCTACGCTGTATCATGGATCAGTTACATGAGGAGATAAGGCAACCTGTGCTGTCACTTACAACTGATCCAGAGTCCTCTGACAGTGACGATGAAGAACCAAACCATCAGAATAAGAGACTGTTAGGGGGAACAAGCCTGTCTCATACTGAAAACCTTCAAGATGATGATGGTGATGTGGATATGTATTCAGAAAGTGGTGATGATGCCATGGATGCTAAACCACTACATGTTAACACAGCAGAAGAGCAGACAGACCAGGATAAGGAGACTGATGGAGCCTCGAAATCCAAACGCAGGAAGACCAGCACAGATCCTGTGGATGATAATGAAGTGAAATTGTCTGTCGAGGGTGAGCCAATGAGTGATGATGAAACAGAGCATCATGATCAAGTTGATGAAAACATGGACAATGAGGATGTTGCATTAATCAAAGAGGAAAAGCCAATGGATTCAGACACAATGGAACACACCAGGCAGCCATCTGATCAGGAAAGAACCAAAAGGGAGCAAATAGCTGAAAAAAGGAAGAAAAGGATGAAAGTACCATTGAACTACAGCAGTATAGTCACTGACTTATTTGATGGAACAATACAGAGTTCAGTGCAATGTTTAACCTGCCACAGGGTTTCATCAAGGGCAGAAACATTTCAAGATGTCTCTCTACCAATTCCAGGCAAAGATGAGCTGACAGTTCTTCACGCCTCACAGTGCACGCCGTTAGCATCATGTTCATCTGTTATGGACAGAGATCAGGATAAAAGCTGGATGTCAACAATACTTGAATGGCTAAGAAGCTGGTTTTTAGGTCCACAAGTCACACTTTCAGACTGCTTGTCAGCTTTTTTTTCAGCGGATGAATTGAAAGGAGACAACATGTACAGCTGTGAAAAGTGCAAAAAGCTAAGAAATGGTGTCAAACTTTGTAAAGTAATGCGCCTCCCTGAGGTTTTGTGCATTCATCTGAAGCGTTTCAAGCATGAGATGTACTTCTCTTCAAAAATAAATCACTTCATTTCATTTCCATTGACTGGTTTGGACATGAAACCATTCTTGGTTAAAGATTTTCACAAACAGGATCCAACCCAGAAGTGTACTACATATGATCTTGTTGCCATTATCACACATCATGGTAATGTTGGAGCTGGACACTATGTAACCTTTGCCAAGAACTATATCAATGGTAAATGGTATGAGTTCAATGACTCCTGGGTCAGCGAAGTTTCTGACTCATTTGTGGCTGATGTGGAAGCCTATGTACTGTTTTACAGGAAATCAAGTGACGAAGCCACCAGAGAACGACAGACTTTCTTCAATTTACTGAAAGATGCTCAGACCCATGAATCCAGGTATTTTGTTTCCAAGAAATGGTTGACGAAGTTTCAGTCTTGTATGGAACCAGATCCACAACATACAACAACCTTGGCCAGAATTAATGGTAAAGAAGAAAAAGAAAATCCTCCAGAAGAGACCAAAAAAATGATGGACAATTTACTGAAGGAAAAATTTGCAGCTGGTCACAGGGTAGCAATCATCCATCACCTTGAACTTCTCCCACCACCCTCACCAATTCTGTTTTACTCTTATTGTGATGATCAAAATGCACCGCATAAGCATGTGGCTGTTATTTTTACTGTACATATGCCAGTAGAGCCCAGCCCATCTCTGTCTCCTAAAGAAGCAGAGGGAAGTGTAGAGAAATATCTTTCAGGTCCGATCACAAACTCTGATTTTTTGTGTCGCCATGGAGCTGTGCATCCACTGAAATTTGAGAAAATTCACGAGATCACAGTTCCCCTTCCCCAATCTGTATGGGTCCATCTTCTTAACCGGTTTGGTGGAGGTCCCCCAGCTACAACACTTAACATCTGCAGACACTGCAAGAGAGCTCTAGATGAACTTGAAAGAAGAAGACAAAGAGAAATGGAAACATTCAAGAGGTTGAACCATGACTATCCAGCCAACGAAAATGTGGATGTGTATTTTATCAGTTTGCGTTGGTTTAAACTATGGGAAGTGTTTGTAAAAGGACAGGAAGATGTAGAATGTCACAATGATGAGAACTATTGA

Transcript

rna-Spis8812_mrna

ATGCCGTCTTGTCCTCATTTGAACTCTATCGATGAAGTAAATGTAGAAGCGATAAAGGGGAAAATGAAAGAGGCAGCTGTACCATTTGTGGTGTATCATAATCAGAAGGAGCTTAGATCATCAGAAAGTCAGTCACTAGGGTGTGGACGATTTGGTAACAATCACATTGAGCTTCACAATCAGACTCATGAGGTCTTGGATATGGAAGATGCACTAGAATTAGAGAAAGGCCTAAAGCCAAGAGGTTTATGTGGTTTGTCAAACCTTGGAAATACATGTTACATGAATGCTGCTCTTCAGGCTCTATCAAACTGTCCACCCCTTACTCAATATTTCTTGGAATGTGGAAGCTttgcaaaagaaacaaagaactcTTCTGTCAGCAGAAATTTTTCAATACTAGTCAATGAGATATGGTCAAGGAAAAGACCAAAGTATGTTGTGCCATCTCAGCTGCTTCGTAGTGTTCGGCAGATCAACTCTCAGTTCAGAGGTTATGGGCAGCAGgaTGCTCAGGAATTCCTACGCTGTATCATGGATCAGTTACATGAGGAGATAAGGCAACCTGTGCTGTCACTTACAACTGATCCAGAGTCCTCTGACAGTGACGATGAAGAACCAAACCATCAGAATAAGAGACTGTTAGGGGGAACAAGCCTGTCTCATACTGAAAACCTTCAAGATGATGATGGTGATGTGGATATGTATTCAGAAAGTGGTGATGATGCCATGGATGCTAAACCACTACATGTTAACACAGCAGAAGAGCAGACAGACCAGGATAAGGAGACTGATGGAGCCTCGAAATCCAAACGCAGGAAGACCAGCACAGATCCTGTGGATGATAATGAAGTGAAATTGTCTGTCGAGGGTGAGCCAATGAGTGATGATGAAACAGAGCATCATGATCAAGTTGATGAAAACATGGACAATGAGGATGTTGCATTAATCAAAGAGGAAAAGCCAATGGATTCAGACACAATGGAACACACCAGGCAGCCATCTGATCAGGAAAGAACCAAAAGGGAGCAAATAGCTGAAAAAAgGAAGAAAAGGATGAAAGTACCATTGAACTACAGCAGTATAGTCACTGACTTATTTGATGGAACAATACAGAGTTCAGTGCAATGTTTAACCTGCCACAGGGTTTCATCAAGGGCAGAAACATTTCAAGATGTCTCTCTACCAATTCCAGGCAAAGATGAGCTGACAGTTCTTCACGCCTCACAGTGCACGCCGTTAGCATCATGTTCATCTGTTATGGACAGAGATCAGGATAAAAGCTGGATGTCAACAATACTTGAATGGCTAAGAAGCTGGTTTTTAGGTCCACAAGTCACACTTTCAGACTGCTTGTCAGCTTTTTTTTCAGCGGATGAATTGAAAGGAGACAACATGTACAGCTGTGAAAAGTGCAAAAAGCTAAGAAATGGTGTCAAACTTTGTAAAGTAATGCGCCTCCCTGAGGTTTTGTGCATTCATCTGAAGCGTTTCAAGCATGAGATGTACTTCtcttcaaaaataaatcacttcatttcatttccaTTGACTGGTTTGGACATGAAACCATTCTTGGTTAAAGATTTTCACAAACAGGATCCAACCCAGAAGTGTACTACATATGATCTTGTTGCCATTATCACACATCATGGTAATGTTGGAGCTGGACACTATGTAACCTTTGCCAAGAACTATATCAATGGTAAATGGTATGAGTTCAATGACTCCTGGGTCAGCGAAGtttctgACTCATTTGTGGCTGATGTGGAAGCCTATGTACTGTTTTACAGGAAATCAAGTGACGAAGCCACCAGAGAACGACAGACTTTCTTCAATTTACTGAAAGATGCTCAGACCCATGAATCCAGGTATTTTGTTTCCAAGAAATGGTTGACGAAGTTTCAGTCTTGTATGGAACCAGATCCACAACATACAACAACCTTGGCCAGAATTAatggtaaagaagaaaaagaaaatcctcCAGAAGAGACCAAAAAAATGATGGACAATTTACTGAAGGAAAAATTTGCAGCTGGTCACAGGGTAGCAATCATCCATCACCTTGAACTTCTCCCACCACCCTCACCAATTCTGTTTTACTCTTATTGTGATGATCAAAATGCACCGCATAAGCATGTGGCTGTTATTTTTACTGTACATATGCCAGTAGAGCCCAGCCCATCTCTGTCTCCTAAAGAAGCAGAGGGAAGTGTAGAGAAATATCTTTCAGGTCCGATCACAAACTCTGATTTTTTGTGTCGCCATGGAGCTGTGCATCCACtgaaatttgagaaaattcacGAGATCACAGTTCCCCTTCCCCAATCTGTATGGGTCCATCTTCTTAACCGGTTTGGTGGAGGTCCCCCAGCTACAACACTTAACATCTGCAGACACTGCAAGAGAGCTCTAGATGAACTTGAAAGAAGAAGACAAAGAGAAATGGAAACATTCAAGAGGtTGAACCATGACTATCCAGCCAACGAAAATGTGGATGTGTATTTTATCAGTTTGCGTTGGTTTAAACTATGGGAAGTGTTTGTAAAAGGACAGGAAGATGTAGAATGTCACAATGATGAGAACTATTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF05609 all species →	LAP1_C	Lamina-associated polypeptide 1, AAA+ activator domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR050185 all species →	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR006615 all species →	Domain	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	Interproscan
IPR046753 all species →	Domain	Torsin-1A-interacting protein 1/2, AAA+ activator domain	Interproscan
IPR035927 all species →	Homologous_superfamily	DUSP-like superfamily	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR038599 all species →	Homologous_superfamily	LAP1C-like, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21646 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0001671 all species →	Molecular Function	ATPase activator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11848	USP20_33; ubiquitin carboxyl-terminal hydrolase 20/33	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.