Gene detail

Detailed information of PFX26584.1 in Stylophora pistillata

Genomic Location: Spis.scaffold122:15178...32645
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ass1

ATGTCTGAGGACAAGAAGACCGTGGTTTTAGCTTACAGTGGAGGTCTTGATACATCTTGTATCTTGCTTTGGCTCAAAGAACAGGGGTATGAAGTGATTGCTTTCATGGCAGATGTGGGACAAGATGAAGATTTCAAGGAAGCGAGGGAGAAGGCCACAAAACTAGGGGCAAAAAAGGTGTTTATTGAAGATTTGAGAGAAGAATTTGTGAAAGAGTTCATCTTTCCAGCTGTACAAGCAAATGCAATCTATGAAGATCGCTATTTGATGGGGACAGCTGTTGCCAGGCCTTGTATCGCTCGCCGTCAAATCCAGATTGCTCTTAAGGAGGGTGCAGAATATGTATCCCATGGTGCTACAGGAAAGGGTAATGATCAAGTGCGTTTTGAGATGACTTACTATGCACTGTATCCAGGGGTTAAGGTTATTACCCCATGGAGACTTCCAGAATTTTACAACAGATTCAAGGGAAGAAAGGACCTGTTTGACTATGCAGAGCAAAAGGGCATTCCATTACCAGTCACCCCAAAGAAGCCCTGGAGTATTGATGCCAACCTTATGCACATAAGTTATGAATCTGGAATTCTTGAAAACCCTAAGACCATGGCTCCAGATGATCTTTACTGCTTTACAGCTGATCCAAAATCTGCTCCTGATGAGCCAGAACAGCTTGAGCTCGAGTTTAAGAAAGGTGTGCCAGTTCGAGTTCAGAACTTGAAAGATGGCACGGTGCATGACAAACCATTGGATATTTACCTTTATCTCAACAAAATGGGTGGTCGCCATGGTGTTGGAAGAATTGATATCGTGGAAAACAGATTTGTTGGAATGAAATCCAGAGGAATCTATGAATGCCCCGGTGGCACCATATTGCGAGCTGCACATTTGGACATTGAGACATTCACAATGGACAGGGAATTGCGTAAAATCAAGCAGATGATGGCCGGCAAGTTTTCAGAGCAGGTTTACTATGGATATTGGTATAGTCCTGAGGGGGATTATGTGCGCTTCTGTCTGGACAAGAGTCAAGACAACGTGGAGGGAAAAGTGACACTGGATCTGTTCAAAGGAAATGTCTACATCAGAAGCCGCGAGTCTAAAGCATCCCTCTACAACGAGGAATTAGTCAGCATGGATACCATTACTGGCTACAACCCACAAGACGCAGCTGGCTTTATCAGAATTAACGCTTTGAGTTGTGAAACACTTGCTGAACTTCTGTGGAAGTTGTTTCAACAAGCTTCCCAGCTGGACAATCTTTTCCATCAAGCATTTCAGGGGAATGAATTAGAACTGAAGCGAATGGATAATGTAAAAACATCAGCAAGAAACCTCATGAAACTGTTCTTGACTAAGACATTTATCATAGAGAAACAACCTCCTCAAGTCTTAAAGATTCAAACCAAGTTTGGAGTTGTGGTGCGGCATCTTCTTGGTGGAAAACTGAATATCCAAACGCATCCACCAGAGGTTACCTGTACGCTCATTTCTGAAAAGCAAGCACAAGGTCTTAATGTTGGGAATCGCAAGAGCAGTGTATCATCAAACAACAGTCCTGTGTTGAACAACAAGAAGACACTGGAATTCAACCAAGTCACAGGGAAGCTGATTGGTGAATTCAAAAACTTGTCTCTGGCCAAAGCCACAAGACAGGGCGGTAAGAACAAGGAAGTAGTCACAGAAGAGAAGTCGGCATTACTCTTCTCCACACAAATCAACCTCGGAAAGGAAATATTCAATATATCGGCGATTTCAGTTCCTGTGGTTGTGACAGTTCATGGCAATCAACAGTGTGATGCTGAAGCAACTGTTTTCTGGGACAACGCATTCGCTGACAAGGAAAGGAAACTTTTCGATGTCCCCGATCAAGTTGAATGGCCCCGCTTTGCAGAAGCTCTGAACAAAAGATGGGCTCTTAACAATCAACTCCCACTTAGCCCTGACAGCATCGCGTTCTTAGGGAAGAAGATTTTTCCAGGCAAAATGGAGGGAGGTATGGACAATGCCATGGTTACAAGACAGCTCTTCAATAGGGATCATATGAACGGTCGCTCCTTCTCCTTTTGGAAATGGTTTTACGGAGCCTTAGATGTGGTGTCAAGACGGCTGCTGGACGAATGGAGGGACGAACGCGTGGCTGGTTTCATCAGCAAGAATATTGCGCATGACATGTTAAGAGGCTGTAATTCTGGCACGTTCCTGCTGAGGTTCAGTGAGACAGAGATTGGTGGAATTAGCGTCGCCTATGTTAATACATATGACGGTGGTCCGTGTGAAGTTTTCGATGTGGCTCCATGGACGAACACACATCTGCAAATGAGAAAATTTTCTGACCGACTAAAAGACTTGGGAGAACTTGTTCAGCTTTTCCCTAACATAGCCAAAGATGACGCTTTTGGTCCGTACTATACCAATGATGGTAAGCTTCGTGAACACAGCCGACTCAGAAAAGCGCTGAACAAAGGTGAAGAAAATGGCGCCTGA

Transcript

rna-Spis8708_mrna

ATGTCTGAGGACAAGAAGACCGTGGTTTTAGCTTACAGTGGAGGTCTTGATACATCTTGTATCTTGCTTTGGCTCAAAGAACAGGGGTATGAAGTGATTGCTTTCATGGCAGATGTGGGACAAGATGAAGATTTCAAGGAAGCGAGGGAGAAGGCCACAAAACTAGGGGCAAAAAAGGTGTTTATTGAAGATTTGAGAGAAGAATTTGTGAAAGAGTTCATCTTTCCAGCTGTACAAGCAAATGCAATCTATGAAGATCGCTATTTGATGGGGACAGCTGTTGCCAGGCCTTGTATCGCTCGCCGTCAAATCCAGATTGCTCTTAAGGAGGGTGCAGAATATGTATCCCATGGTGCTACAGGAAAGGGTAATGATCAAGTGCGTTTTGAGATGACTTACTATGCACTGTATCCAGGGGTTAAGgTTATTACCCCATGGAGACTTCCAGAATTTTACAACAGATTCAAGGGAAGAAAGGACCTGTTTGACTATGCAGAGCAAAAGGGCATTCCATTACCAGTCACCCCAAAGAAGCCCTGGAGTATTGATGCCAACCTTATGCACATAAGTTATGAATCTGGAATTCTTGAAAACCCTAAGACCATGGCTCCAGATGATCTTTACTGCTTTACAGCTGATCCAAAATCTGCTCCTGATGAGCCAGAACAGCTTGAGCTCGAGTTTAAGAAAGGTGTGCCAGTTCGAGTTCAGAACTTGAAAGATGGCACGGTGCATGACAAACCATTGGATATTTACCTTTATCTCAACAAAATGGGTGGTCGCCATGGTGTTGGAAGAATTGATATCGTGGAAAACAGATTTGTTGGAATGAAATCCAGAGGAATCTATGAATGCCCCGGTGGCACCATATTGCGAGCTGCACATTTGGACATTGAGACATTCACAATGGACAGGGAATTGCGTAAAATCAAGCAGATGATGGCCGGCAAGTTTTCAGAGCAGGTTTACTATGGATATTGGTATAGTCCTGAGGGGGATTATGTGCGCTTCTGTCTGGACAAGAGTCAAGACAACGTGGAGGGAAAAGTGACACTGGATCTGTTCAAAGGAAATGTCTACATCAGAAGCCGCGAGTCTAAAGCATCCCTCTACAACGAGGAATTAGTCAGCATGGATACCATTACTGGCTACAACCCACAAGACGCAGCTGGCTTTATCAGAATTAACGctttgagTTGTGAAACACTTGCTGAACTTCTGTGGAAGTTGTTTCAACAAGCTTCCCAGctggacAATCTTTTCCATCAAGCATTTCAGGGGAATGAATTAGAACTGAAGCGAATGGATAATGTAAAAACATCAGCAAGAAACCTCATGAAACTGTTCTTGACTAAGACATTTATCATAGAGAAACAACCTCCTCAAGTCTTAAAGATTCAAACCAAGTTTGGAGTTGTGGTGCGGCATCTTCTTGGTGGAAAACTGAATATCCAAACGCATCCACCAGAGGTTACCTGTACGCTCATTTCTGAAAAGCAAGCACAAGGTCTTAATGTTGGGAATCGCAAGAGCAGTGTATCATCAAACAACAGTCCTGTGTTGAACAACAAGAAGaCACTGGAATTCAACCAAGTCACAGGGAAGCTGATTGGTGAATTCAAAAACTTGTCTCTGGCCAAAGCCACAAGACAGGGCGGTAAGAACAAGGAAGTAGTCACAGAAGAGAAGTCGGCATTACTCTTCTCCACACAAATCAACCTCGGAAAGGAAATATTCAATATATCGGCGATTTCAGTTCCTGTGGTTGTGACAGTTCATGGCAATCAACAGTGTGATGCTGAAGCAACTGTTTTCTGGGACAACGCATTCGCTGACAAGGAAAGGAAACTTTTCGATGTCCCCGATCAAGTTGAATGGCCCCGCTTTGCAGAAGCTCTGAACAAAAGATGGGCTCTTAACAATCAACTCCCACTTAGCCCTGACAGCATCGCGTTCTTAGGGAAGAAGATTTTTCCAGgcAAAATGGAGGGAGGTATGGACAATGCCATGGTTACAAGACAGCTCTTCAATAGGGATCATATGAACGGTCGCTCCTTCTCCTTTTGGAAATGGTTTTACGGAGCCTTAGATGTGGTGTCAAGACGGCTGCTGGACGAATGGAGGGACGAACGCGTGGCTGGTTTCATCAGCAAGAATATTGCGCATGACATGTTAAGAGGCTGTAATTCTGGCACGTTCCTGCTGAGGTTCAGTGAGACAGAGATTGGTGGAATTAGCGTCGCCTATGTTAATACATATGACGGTGGTCCGTGTGAAGTTTTCGATGTGGCTCCATGGACGAACACACATCTGCAAATGAGAAAATTTTCTGACCGACTAAAAGACTTGGGAGAACTTGTTCAGCTTTTCCCTAACATAGCCAAAGATGACGCTTTTGGTCCGTACTATACCAATGATGGTAAGCTTCGTGAACACAGCCGACTCAGAAAAGCGCTGAACAAAGGTGAAGAAAATGGCGCCTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02864 all species →	STAT_bind	STAT protein, DNA binding domain	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF21354 all species →	STAT_linker	Signal transducer and activator of transcription, linker domain	Domain	Interproscan
PF00764 all species →	Arginosuc_synth	Arginosuccinate synthase N-terminal HUP domain	Domain	Interproscan
PF20979 all species →	Arginosuc_syn_C	Arginosuccinate synthase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR013801 all species →	Domain	STAT transcription factor, DNA-binding	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR012345 all species →	Homologous_superfamily	STAT transcription factor, DNA-binding, N-terminal	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR048988 all species →	Domain	Signal transducer and activator of transcription, linker domain	Interproscan
IPR023434 all species →	Family	Argininosuccinate synthase, type 1 subfamily	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR018223 all species →	Conserved_site	Argininosuccinate synthase, conserved site	Interproscan
IPR048267 all species →	Domain	Arginosuccinate synthase-like, N-terminal domain	Interproscan
IPR015988 all species →	Homologous_superfamily	STAT transcription factor, coiled coil	Interproscan
IPR048268 all species →	Domain	Arginosuccinate synthase C-terminal domain	Interproscan
IPR024074 all species →	Homologous_superfamily	Argininosuccinate synthetase, catalytic/multimerisation domain body	Interproscan
IPR001518 all species →	Family	Argininosuccinate synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11587 all species →	ARGININOSUCCINATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0004055 all species →	Molecular Function	argininosuccinate synthase activity	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006526 all species →	Biological Process	L-arginine biosynthetic process	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0000050 all species →	Biological Process	urea cycle	Interproscan
GO:0000053 all species →	Biological Process	argininosuccinate metabolic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX26584.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.