Gene detail

Detailed information of PFX26626.1 in Stylophora pistillata

Genomic Location: Spis.scaffold121:284626...304845
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Nomo1

ATGAAGCTTTTAACCAAGCAGGGGATCATCAAGTCTCAAACAGAATGTGCACCGAACAATGGCTACTTTCTTATTCCATTGTATGACAAGGGAACATTTGTGTTGAAAATTGAGCCTCCTGTTGGTTGGAGTTTTGATCCAAACAGTGTGGAATTAAATATAGATGGAACCACAGATAAATGTAGCAAAGGAGAAGACATAAACTTTATTTTTACTGGTTTCACACTCTCTGGAAAGGCTGAAGCAGAGGTTACAGTGGAGTCCAGCAATGTTGATGTTGTTGACAAGATAGTAGTTTCAGGATATGATGTAAAAGGTCATGTTTTGAGTGATGGTGAACCTATTCAAGATGTTGGCTTTCTTCTGTTCTCGAAATCTGTAAACCAAAAGAGTTTTCCAGGTTGTGAAGAGATCCCTCCTGATGTAATAGAGATCATTAAAAAGAAAATGGAGGTTGATGCACCTCTGTGCCGGGTCAAGTCTGGTGTTGATGGGCTGTTTGTCTTCCCTAGCATTCCAAGTGGAGAATACACACTGGTTCCTTATTACCAAGGAGAACTCATAACATTTGATGTGGTTCCCTCAAAGCTTACTTTCTCTGTCAATTACAAAAGTGTTGTGTTAAAGACTCCATTCCAAGTGCATGGATTTTCTGTTACTGGTCAAGTTCACACAGCAGAGGGACAAGGTATTGCAGATGTTAGCATAGCAGCTGGTGAGGGAATTACTGCAAAGACAACGTCAGAAGGTGTTTATGTTTTAAACAATGTCACAGCTGGAACTTACACTCTTCAGGCAAGCAAAGAGCACTTCTTTTTTAACTCCCTCAAAGTTCAAGTGACTCCAAACACTCCTAGGTTACCAGTCATAACTCCACAAGCATACCATTTGTGTGGGGCTCTTAAGTTTGACAAGTTTCCACCTGGAGTCACTCAGTTGAAAGGACGTAAAATGATTCTACAAACAGAAGGAGCATCGATTGCTACAAGGTCAATGTCTACCTCGGTTGATGAAAATGGCAACTTTTGCTTTAAAGTACCATCAGGGACTCATACCATTCAGCCAATAATAGCCATGCAAGAAGTCACCGCTGGCTTGGCATTAACTCCCACAGAACAAGTCGTGACGATAAAGAGTAGTCCAGTTATTGGCATAACATTCTCACAGTTCAGGGCAACTGTTACTGGGATTGTCAAGTGTATTGGTGGCTCTTGTAGCGGAGTCTCTGTTACACTTCAGTCTGTGTCAAATCCAAGCCTTCCAAAAGCACAAGTCCAGGTGGCTGAAACTTCTTTCATGTTTAAAGATGTCTTTCCTGGAAATTATAAAGTGTCAGTGTTAGAAGAATCTTGGTGCTGGGAGAGTTCTTCGTTTGAGTTCCAAGTGTCTAAAGCAGATGTCACTGACCTTCAGTTTGTCCAGTCTGGATTTATTTTAAAATGTATCCTATCTCATGACATAACATTGTTTTTCTCGCTGGAATCTCACAAAGAAATGGAAGATTCCTTCGACTTACCAAAGGGAACCAAGACTTTCTGTCTGAAGGAACCAGGAGTTTACAATTTGATGCCACGCTCATGTCATCAATTTGAGCAAGAAGTGTTCAAGTATAATACTTCCGCGCCGTCCGTGTTGACATTAACAGCCATGAAACATTTACTCTCTGGCACAGTCAAGACTCAAGAACCCACAAGTGACATTACAATAAAGATCAGGTCCCTGAAGTCCAAAGAGGTTGCCATCCTCGGACCACTGAAACCGGAATCAAATGAAAAGAAAGATGAGAGTAATGCAAACAGCAGCAAACCAGAGGAGGGAAAACAACAGCTTTCATACAACTTTTCAACTTGGGGAAGGCGCGGCGAGGAATTGGAAATTACTCCAGTGTCTTCAGAACTGTTGTTTTACCCTGCAAACAAAGTTGTCACCATCTCTGATGACTGTCCGGCAGCATGGGCTGAATTTGAGGGAAGGATGGGTGTATTCATTGAGGGACAAATCACCCCTCCCCTTAGTGGCGTGCAGATTGTTATTTCATCAGGAGGAAAGGAGCCGATCACTGAAATTGAAGTGGAAACAGACACAAATGGAAAATACAGGGTGGGTCCCTTGCATGGTGACATTGAATATTCGCTGGCTGCAAGCAAAGCGGGTTTTGTACTCAGTCCTGCGGCTGGTAAGAAAGGAGATTTTCAAGCGCTAAAGCTGGGACAGATCGACATTACGGTGACAGATGAAGACGGCCAGCCATTATCGGCAGTTCTTCTGTCACTCAGTGCAGGACAGTTTCGTAGCAACAATCTCACTCTGGATAATGGCTCTATGGCTTTCACCAACTTGGGACCAGGACAGTACTTTTTCCGTCCGATGTTAAAGGAATACACCTTTACGCCACCTTCACAGATGATTGATGTGGGCGAGGGTTCAACCGTTCAACTCCAGGTCAAAGGAAAAAGAGTTGCGTTTAGCTGTTTTGGGGTGATTTCCTCACTGAATGGAGAACCAGAGAAGGGTGTTGCTGTGGAGGCGATTGGTCTGGAAAGTTGCGAATCTTTTCAGGAAGAAACAGTTTCAGATCAAGAAGGACAGTATCGATTACGTGGACTTCAGCCTGGCTGTATGTACAGAGTTCGAGTGAAGATCGGAGACAGCAATCCGCATATCGAGCGAGCTTCACCGTCATTTATCAATATACAGGTGTCTGCAACAGATCTTCAGAATGTTAACATGATTGCCTTCCGCCATATCAATCAATTTGAAATCACGGGCAATGTGGTCACGGACAGTAAATTCGTTTCATCTCTAAAGGTAACGCTGTCTCCAGAGAATAATCCAGAGACTCCAGTATTCACCACTCCTGTGAGTGTAGCCAGTTATTTCCAGTTTCCGTCAGTACCTAATGATGGACAACTTTACATCGTTCGTTTGGAGTCGTCCCTCTCTTCATTTAACTATCAGTACATCCGACCTGAATCTACGGTCACTGCCACTGGAGTGCGGGCTCATGTTACGTTTAAGTTTGAACCACAGCCGCGTAAAGTTGAGCCAGAACCAAGTCACGGATCATTTCTAACGTTACCTTTGTTAGTGATTCTGATCCTGGTTGCTGTGAACCACAATAAGGCTTTTTGA

Transcript

rna-Spis8678_mrna

ATGAAGCTTTTAACCAAGCAGGGGATCATCAAGTCTCAAACAGAATGTGCACCGAACAATGGCTACTTTCTTATTCCATTGTATGACAAGGGAACATTTGTGTTGAAAATTGAGCCTCCTGTTGGTTGGAGTTTTGATCCAAACAGTGTGGAATTAAATATAGATGGAACCACAGATAAATGTAGCAAAGGAGAagacataaactttatttttactgGTTTCACACTCTCTGGAAAGGCTGAAGCAGAGGTTACAGTGGAGTCCAGCAATGTTGATGTTGTTGACAAGATAGTAGTTTCAGGATATGATGTAAAAggtcATGTTTTGAGTGATGGTGAACCTATTCAAGATGTTGGCTTTCTTCTGTTCTCGAAATCTGTAAACCAAAAGagttttccAGGTTGTGAAGAGATCCCTCCTGATGTAATAGAgatcattaaaaagaaaatggaggTTGATGCACCTCTGTGCCGGGTCAAGTCTGGTGTTGATGGGCTGTTTGTCTTCCCTAGCATTCCAAGTGGAGAATACACACTGGTTCCTTATTACCAAGGAGAACTCATAACATTTGATGTGGTTCCCTCAAAGCTTACTTTCTCtgtcaattacaaaagtgtTGTGTTAAAGACTCCATTCCAAGTGCATGGATTTTCTGTTACTGGTCAAGTTCACACAGCAGAGGGACAAGGTATTGCAGATGTTAGCATAGCAGCTGGTGAGGGAATTACTGCAAAGACAACGTCAGAAGGTGTTTATGTTTTAAACAATGTCACAGCTGGAACTTACACTCTTCAGGCAAGCAAAGAGCACTTCTTTTTTAACTCCCTCAAAGTTCAAGTGACTCCAAACACTCCTAGGTTACCAGTCATAACTCCACAAGCATACCATTTGTGTGGGGCTCTTAAGTTTGACAAGTTTCCACCTGGAGTCACTCAGTTGAAAGGACGTAAAATGATTCTACAAACAGAAGGAGCATCGATTGCTACAAGGTCAATGTCTACCTCGGTTGATGAAAATGGCAACTTTTGCTTTAAAGTACCATCAGGGACTCATACCATTCAGCCAATAATAGCCATGCAAGAAGTCACCGCTGGCTTGGCATTAACTCCCACAGAACAAGTCGTGACGATAAAGAGTAGTCCAGTTATTGGCATAACATTCTCACAGTTCAGGGCAACTGTTACTGGGATTGTCAAGTGTATTGGTGGCTCTTGTAGCGGAGTCTCTGTTACACTTCAGTCTGTGTCAAATCCAAGCCTTCCAAAAGCACAAGTCCAGGTGGctgaaacttctttcatgtttaAAGATGTCTTTCCTGGAAATTATAAAGTGTCAGTGTTAGAAGAATCTTGGTGCTGGGAGAGTTCTTCGTTTGAGTTCCAAGTGTCTAAAGCAGATGTCACTGACCTTCAGTTTGTCCAGTCtggatttattttaaaatgtatcCTATCTCATGACATAACATTGTTTTTCTCGCTGGAATCTCACAAAGAAATGGAAGATTCCTTCGACTTACCAAAGGGAACCAAGACTTTCTGTCTGAAGGAACCAGGAGTTTACAATTTGATGCCACGCTCATGTCATCAATTTGAGCAAGAAGTGTTCAAGTATAATACTTCCGCGCCGTCCGTGTTGACATTAACAGCCATGAAACATTTACTCTCTGGCACAGTCAAGACTCAAGAACCCACAAGTGACATTACAATAAAGATCAGgTCCCTGAAGTCCAAAGAGGTTGCCATCCTCGGACCACTGAAACCGgaatcaaatgaaaagaaagatgagAGTAATGCAAACAGCAGCAAACCAGAGGAGGGAAAACAACAGCTTTCATACAACTTTTCAACTTGGGGAAGGCGCGGCGAGGAATTGGAAATTACTCCAGTGTCTTCAGAACTGTTGTTTTACCCTGCAAACAAAGTTGTCACCATCTCTGaTGACTGTCCGGCAGCATGGGCTGAATTTGAGGGAAGGATGGGTGTATTCATTGAGGGACAAATCACCCCTCCCCTTAGTGGCGTGCAGATTGTTATTTCATCAGGAGGAAAGGAGCCGATCACTGAAATTGAAGTGGAAACAGACACAAATGGAAAATACAGGGTGGGTCCCTTGCATGGTGACATTGAATATTCGCTGGCTGCAAGCAAAGCGGGTTTTGTACTCAGTCCTGCGGCTGGTAAGAAAGGAGATTTTCAAGCGCTAAAGCTGGGACAGATCGACATTACGGTGACAGATGAAGACGGCCAGCCATTATCGGCAGTTCTTCTGTCACTCAGTGCAGGACAGTTTCGTAGCAACAATCTCACTCTGGATAATGGCTCTATGGCTTTCACCAACTTGGGACCAGGACAGTACTTTTTCCGTCCGATGTTAAAGGAATACACCTTTACGCCACCTTCACAGATGATTGATGTGGGCGAGGGTTCAACCGTTCAACTCCAGGTCAAAGGAAAAAGAGTTGCGTTTAGCTGTTTTGGGGTGATTTCCTCACTGAATGGAGAACCAGAGAAGGGTGTTGCTGTGGAGGCGATTGGTCTGGAAAGTTGCGAATCTTTTCAGGAAGAAACAGTTTCAGATCAAGAAGGACAGTATCGATTACGTGGACTTCAGCCTGGCTGTATGTACAGAGTTCGAGTGAAGATCGGAGACAGCAATCCGCATATCGAGCGAGCTTCACCGTCATTTATCAATATACAGGTGTCTGCAACAGATCTTCAGAATGTTAACATGATTGCCTTCCGCCATATCAATCAATTTGAAATCACGGGCAATGTGGTCACGGACAGTAAATTCGTTTCATCTCTAAAGGTAACGCTGTCTCCAGAGAATAATCCAGAGACTCCAGTATTCACCACTCCTGTGAGTGTAGCCAGTTATTTCCAGTTTCCGTCAGTACCTAATGATGGACAACTTTACATCGTTCGTTTGGAGTCGTCCCTCTCTTCATTTAACTATCAGTACATCCGACCTGAATCTACGGTCACTGCCACTGGAGTGCGGGCTCATGTTACGTTTAAGTTTGAACCACAGCCGCGTAAAGTTGAGCCAGAACCAAGTCACGGATCATTTCTAACGTTACCTTTGTTAGTGATTCTGATCCTGGTTGCTGTGAACCACAATAAGgctttttga

Protein

Pfam domain

No Pfam domain signature was detected for PFX26626.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR051417 all species →	Family	Serine-Aspartate Repeat-Containing	Interproscan
IPR013784 all species →	Homologous_superfamily	Carbohydrate-binding-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23303 all species →	CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26500	NOMO1_2_3; BOS complex subunit NOMO	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.