Gene detail

Detailed information of PFX26670.1 in Stylophora pistillata

Genomic Location: Spis.scaffold120:256903...269226
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

AWC38_SpisGene8626

ATGGCGGCTGTGGAAGACAGAACGAATTCGAACCCTTTGGTCCAACCCTTGTTGACGGATCTTTATCAAATCACAATGGCTTATGCTTACTGGAAGAGCGGCAAAGTATTGGACAATGCAGTGTTCGATTTATACTTTCGCAAGAATCCTTTTCACGGAGAATTCACCGTTTTCGCCGGGTTGGAAGAATGCGTTCATTTTGTAAGAAACTTCAAGTTTTCAGATTCAGATATATCTTATCTCAAAACAATATTACCAGCAGCAGTGGAAGAAGAGTTTTACAAGTTTCTAAGGGACATAGACACAAGAAAGGTTACTCTGAGTGCCATGTTAGAGGGGAGCATTGTCTTCCCAAAAATTCCTTTGATCAGAGTGGAAGGACCACTACCAGTTATCCAACTCATGGAGACAACTCTCCTAAACTTAGTGAACTTTGCAAGCTTAGTAGCAACAAATGCAGCTAGATTTCGCCTTGCAGCTGGATGGAATAAATCTTTAATTGAGTTTGGGTTACGAAGATCTCAGGGCCCAGATGGAGGATTGTCAGCATCTAAATATTGTTATATCGGAGGGTTTGATGGTACAAGTAATGTTTTAGCTGGAAAGTTATATGGCATTCCAGTCAAAGGTACCCAAGCACATGCCTTCATCACGTCATTCACACCAGATGAGCTTCCATCGGTCGGCACACTGCAGCCTACAGACAAGAGTAAGGAACCAAGAGACTTTTATCCTGTAGTGTTAGATTGGCTGAAGAAAGTCTGCCCTGTGCTGCGTGTTCTGGAAAGTGAGGTTCATGTTGGTGAACTTGCTGCATTTTCAGCATATGCTGTGGCCTTCCCAGAGACATTTCTAGCACTTGTTGATACCTATGATGTTCTAAGGAGTGGAATCCCAGGATTCTCTGCGGTGGCGTTAGCTCTCAACGATTTTGGCTACCGAGCCATAGGGGTACGACTTGACTCCGGAGATTTATCGTACATCTCATTACAGATAAGAAAAGCGCTAGAAAAAGGCCATGCCATCGATTCTTTTGGTATAGGAACTCATCTGGTAACTTGTCAAAAGCAGCCTGCATTGGGATGTGTCTTTAAGCTTGTTGAACTAAATAGCGATGCTCGAATGAAACTCAGCCAAGACATAGAGAAAGTTACGATACCTGGAAAGAAGGAGGCCTTCCGTTTGTATGGCGGTGACGGGCGGGCCCTTCTTGATCTCATGCTCAGGTGCAACGAGGCACCTCCGTCTCCAGGGAAACGTGTATTGTGCCGGCATCCATTTGATGAGGCCAAGCGAGCGTATGTCTGTCCTTCCCATGTAGAGGCTTTATACCATGTGTACTGGAAAGATGGCAAGATATGCAGCCCATTACCACCTCTATCGGAGATTAAAGAGAGAGTGAAGGATTCGTTAAAAAGGTTTAGACAAGACCATCTGAGGGCCTTGAATCCTACGCCTTACAAGGCATCCTGTTCAGCGAATTCCTGTATAACACAGGAAAGGGTTTTTTATCATCAGACCATGACTCCATCCTGGCTGGAAATGTACGCCTCATACATTGACAGCTCACGTGTACTGACCGCTGCACAGCTCACATTCAACGCGGGCAACGTAGATAACGCTGCCCTTTTAAAGATACCCATGATTCCTGCCGGTACACTTAGAGATTCAATGCCGCTGACAATTGAGATCACGGTCGCACATGACGTAAGCATTGGTCAAGGAACCGACAGTGATATCGCATATGGCGTGTCAGATGGTAACAGAATGATTGGTTTTCACACATGGGACAAGGGAAACTACAATGATCGGTCTCCTTGCAACGGAGTGGAAGGTGTCTCCGGATCCACCTTAACGTCTGTTCGCCTCGAATCACTTACTCCAAAACCAAGCGATTCTTTCTACCCTGGTCAGTATGTTTTAACTCTTAAGTTGGATCAACGCTGGGGATCGTGCTATACCGCGCATGACGGAGGCTTCGTGAGCACCGCTGGCTTCAACAGTCGACTGACGTTCAGTAAGGGACTTACTTTGGAGGTGTACAAAGGCGACAAAGTCGAGCGAGTTGGCATCCGATACATCAAGGTCACCATTATAGGAGATGATGCTTAG

Transcript

rna-Spis8626_mrna

ATGGCGGCTGTGGAAGACAGAACGAATTCGAACCCTTTGGTCCAACCCTTGTTGACGGATCTTTATCAAATCACAATGGCTTATGCTTACTGGAAGAGCGGCAAAGTATTGGACAATGCAGTGTTCGATTTATACTTTCGCAAGAATCCTTTTCACGGAGAATTCACCGTTTTCGCCGGGTTGGAAGAATGCGTTCATTTTGTaagaaacttcaagttttcaGATTCAGaTATATCTTATCTCAAAACAATATTACCAGCAGCAGTGGAAGAAGAGTTTTACAAGTTTCTAAGGGACATAGACACAAGAAAGGTTACTCTGAGTGCCATGTTAGAGGGGAGCATTGTCTTCCCAAAAATTCCTTTGATCAGAGTGGAAGGACCACTACCAGttatCCAACTCATGGAGACAACTCTCCTAAACTTAGTGAACTTTGCAAGcttAGTAGCAACAAATGCAGCTAGATTTCGCCTTGCAGCTGGATGGAATAAATCTTTAATTGAGTTTGGGTTACGAAGATCTCAGGGCCCAGATGGAGGATTGTCAGCATCTAAATATTGTTATATCGGAGGGTTTGATGGTACAAGTAATGTTTTAGCTGGAAAGTTATATGGCATTCCAGTCAAAGGTACCCAAGCACATGCCTTCATCACGTCATTCACACCAGATGAGCTTCCATCGGTCGGCACACTGCAGCCTACAGACAAGAGTAAGGAACCAAGAGACTTTTATCCTGTAGTGTTAGATTGGCTGAAGAAAGTCTGCCCTGTGCTGCGTGTTCTGGAAAGTGAGGTTCATGTTGGTGAACTTGCTGCATTTTCAGCATATGCTGTGGCCTTCCCAGAGACATTTCTAGCACTTGTTGATACCTATGATGTTCTAAgGAGTGGAATCCCAGGATTCTCTGCGGTGGCGTTAGCTCTCAACGATTTTGGCTACCGAGCCATAGGGGTACGACTTGACTCCGGAGATTTATCGTACATCTCATTACAGATAAGAAAAGCGCTAGAAAAAGGCCATGCCATCGATTCTTTTGGTATAGGAACTCATCTGGTAACTTGTCAAAAGCAGCCTGCATTGGGATGTGTCTTTAAGCTTGTTGAACTAAATAGCGATGCTCGAATGAAACTCAGCCAAGACATAGAGAAAGTTACGATACCTGGAAAGAAGGAGGCCTTCCGTTTGTATGGCGGTGACGGGCGGGCCCTTCTTGATCTCATGCTCAGGTGCAACGAGGCACCTCCGTCTCCAGGGAAACGTGTATTGTGCCGGCATCCATTTGATGAGGCCAAGCGAGCGTATGTCTGTCCTTCCCATGTAGAGGCTTTATACCATGTGTACTGGAAAGATGGCAAGATATGCAGCCCATTACCACCTCTATCGGAGATTAAAGAGAGAGTGAAGGATTCGTTAAAAAGGTTTAGACAAGACCATCTGAGGGCCTTGAATCCTACGCCTTACAAGGCATCCTGTTCAGCGAATTCCTGTATAACACAGGAAAGGGTTTTTTATCATCAGACCATGACTCCATCCTGGCTGGAAATGTACGCCTCATACATTGACAGCTCACGTGTACTGACCGCTGCACAGCTCACATTCAACGCGGGCAACGTAGATAACGCTGCCCTTTTAAAGATACCCATGATTCCTGCCGGTACACTTAGAGATTCAATGCCGCTGACAATTGAGATCACGGTCGCACATGACGTAAGCATTGGTCAAGGAACCGACAGTGATATCGCATATGGCGTGTCAGATGGTAACAGAATGATTGGTTTTCACACATGGGACAAGGGAAACTACAATGATCGGTCTCCTTGCAACGGAGTGGAAGGTGTCTCCGGATCCACCTTAACGTCTGTTCGCCTCGAATCACTTACTCCAAAACCAAGCGATTCTTTCTACCCTGGTCAGTATGTTTTAACTCTTAAGTTGGATCAACGCTGGGGATCGTGCTATACCGCGCATGACGGAGGCTTCGTGAGCACCGCTGGCTTCAACAGTCGACTGACGTTCAGTAAGGGACTTACTTTGGAGGTGTACAAAGGCGACAAAGTCGAGCGAGTTGGCATCCGATACATCAAGGTCACCATTATAGGAGATGATGCTTAGAGGAAGGAACCTTAACTTATAATCACCATCACTCGATTTCATCGGCATTAATAGGATAGTTGTAACCATGGTTATGAAGGCAGAGGAGTTGAgaggtagaaaaaaaataacaagaaaacttgtaattgtaattttttt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17767 all species →	NAPRTase_N	Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain	Domain	Interproscan
PF17956 all species →	NAPRTase_C	Nicotinate phosphoribosyltransferase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR040727 all species →	Domain	Nicotinate phosphoribosyltransferase, N-terminal domain	Interproscan
IPR007229 all species →	Family	Nicotinate phosphoribosyltransferase family	Interproscan
IPR041619 all species →	Domain	Nicotinate phosphoribosyltransferase C-terminal domain	Interproscan
IPR006405 all species →	Family	Nicotinate phosphoribosyltransferase pncB-type	Interproscan
IPR036068 all species →	Homologous_superfamily	Nicotinate phosphoribosyltransferase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11098 all species →	NICOTINATE PHOSPHORIBOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004516 all species →	Molecular Function	nicotinate phosphoribosyltransferase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0034355 all species →	Biological Process	NAD salvage	Interproscan
GO:0009435 all species →	Biological Process	NAD biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00763	pncB, NAPRT1; nicotinate phosphoribosyltransferase	EC:6.3.4.21	Nicotinate and nicotinamide metabolism	ko00760	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.