Gene detail

Detailed information of PFX26675.1 in Stylophora pistillata

Genomic Location: Spis.scaffold120:454710...463008
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis8641_mrna

TCGATGGACTTTCATTTTATACTTTCTGGAACTTTGGTTCTCCCGTATTAAACAACGCACACATGTGGAATAATCGTGTCTTGATTCTTGGTAAAGGCGTGCACAGAGCCTTGCGTCCGGTCTTACATAACAGACTTTGCTCAAGTGAAGCTGTACCCAAAATAACAACTCATTACACGATCGTACCGCGAGAAACTGATTCAAGATGGAAAGAAGTAGACATGGAGAGATTTTCGGACGAAGCCGATGTAGTTATAGTTGGGGGAGGACCGGCGGGGTTATCAGCAGCAATCAGACTGAAGCAATTAGCAGAAGAAACAGGAAAAGAACTGAGAGTTTGTCTTGTCGAGAAAGCTTCTGAAATCGGTGGCCATACTCTCTCTGGTGCCTGCCTAGAGCCAAGAGCACTTAATGAACTTATTCCAGACTGGAAAGACAAAGGGGCACCTCTCAATACACTCGTAAAGGAGGATAAATTTGCAATACTCACAGAGACTGGAAGAATTCCTGTCCCTATATTACCAGGACTGCCCATGCATAACCATGGTAACTACATTGTACGTCTCGGGAATGTTGTTCGTTGGCTAGGTGAGCAGGCAGAAGCACTAGGAGTGGAAATATACCCTGGATACGCTGCCAGTGAAGTGTTATACCATGATGATGGCAGCATCAAGGGAATTGCTACAAATGATGTTGGTATCCAGAAAGATGGTGCTCCTAAGCCTACATTTGAACGAGGCATGGAACTCCATGCGAAAGTTACCATATTTGGTGAGGGATGTCATGGCCACCTTGCTAAGAACTTGTACAAGAAGTTCGACCTGCGGGAAAACTGTGATCCACAAACATATGCCATTGGGCTCAAAGAGCTTTGGGAAGTAGCACCTGAGAAACACCATCCTGGAAGAGTAGAGCACACTGTTGGCTGGCCCTTGGATAAAACTACATATGGAGGTTCATTTTTGTATCACCTTGATGAGGACACACCCCTGGTTGCTGTTGGTTTTGTGGTTGGGTTAGACTACAGCAATCCCTATTTGTACCCTTTCAAAGAATTTCAGCGTTTCAAGCTTCATCCCTCGGTAAAGCCAACATTTGAAGGAGGTAAACGGATAGCTTATGGTGCAAGGGCACTCAATGAAGGTGGCTTTCAGTGTATACCCAAGCTGGCCTTCCCTGGTGGCCTTCTTGTTGGCTGTAGTCCTGGATTCATGAATGTTCCAAAGATCAAGGGAACCCATACTGCAATGAAGTCTGGGATGCTTGCAGCCGAATGTGCATTTGAAGCAATAACTGATGAAAATTATTCTTGTGATACACAAGGTCTTCTCTTGGATTCATACGAGTCACGGCTGCGGGAGAGCTGGGTCTGGAAAGAACTCGAGAGCGTACGCAACATAAGGCCCTCTTTCCACAGCCCCTTGGGTCTATATGGCACTATGTTGTACACGGGTATTTTCTATTACATATTTCGCGGCAAGGAGCCATGGACATTGAAAAACAGCAAACCTGATGCGGAATACTTAAAACCCGCCAAAGAATGTAAAGCGATCGAGTACCCCAAACCTGACGGAGAAGTAACCTTTGATTTGCTGTCATCTGTTGCTCTTAGCGGAACAAACCACGAGGGGGATCAACCGGCGCATTTAACCCTTCGTGATGACTCTGTACCCGTCAATAGGAACCTGGCGATTTACGACGGACCCGAGCAGAGATTTTGCCCCGCGGGGGTGTATGAATATGTCCCCAAGGAGGAAGGAGATGGAATGAGGTTGCAAATCAACGCCCAGAACTGTGTTCACTGCAAGACATGTGACATTAAGGACCCCAGCCAGAATATCAACTGGGTGGTTCCCGAGGGGGGCGGGGGACCGGCGTACAATGGAATGTGATGACAAATTCGAAAATTGCCATTTGTTGAGTTtcctctccaaaaaaaaaattaatacaatccCTAAGTTATTTTAAAGCGTCACAGCTTTCCGTGAAAGAATTATAGAAATTGAAATGTTAAGGGACAGTCATTCTCTATATGAGATTATCTCAAAGCAAGATATCAAAAGCGCTCTCAATGAACTTCATGTGTTTGTCGATTCGCTGTCTTTAACATTCTCGCTCTAAAATTTTCTCTCCTTTCGTTACTTTACAATGTAATTAACTTCTGTAACGGGAAAAATACGTCAAGTTTTATATAATCGAAAAGATTTAAAACCGATAAGCAAATAATGAACGATACATGAAAACTTCAATCGCTGAGGCTGCGTTGCCCTCAGCCAGCGGAGTAGAAATAGGATTGAGATCATCGCTTCatgttacatttttttatgCAGGAAACTAAACAGCCAATTTCAATACTGTTAAGCGTTTTATTATCTCtattgagtttaaaaaaatgtctatTTCACGTTGTTTGGACTCTGATTACAATTCCACTTCGGGAGATTCATTTTTTTACGATAAGAGTCGATGTACTGGGCAATAAATAAAGTAACTCTTCCTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21162 all species →	ETFQO_UQ-bd	ETF-QO, ubiquinone-binding	Domain	Interproscan
PF05187 all species →	ETF_QO	Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S	Family	Interproscan
PF07992 all species →	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049398 all species →	Domain	ETF-QO/FixC, ubiquinone-binding	Interproscan
IPR007859 all species →	Domain	ETF-QO/FixX, C-terminal domain	Interproscan
IPR017896 all species →	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan
IPR023753 all species →	Domain	FAD/NAD(P)-binding domain	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR040156 all species →	Family	Electron transfer flavoprotein-ubiquinone oxidoreductase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10617 all species →	ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0004174 all species →	Molecular Function	electron-transferring-flavoprotein dehydrogenase activity	Interproscan
GO:0022900 all species →	Biological Process	electron transport chain	Interproscan
GO:0031305 all species →	Cellular Component	obsolete integral component of mitochondrial inner membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00311	ETFDH; electron-transferring-flavoprotein dehydrogenase	EC:1.5.5.1	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.