Gene detail

Detailed information of PFX26677.1 in Stylophora pistillata

Genomic Location: Spis.scaffold120:476689...480028
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

POT1

ATGGCTCAAGCTTGTCGTCGAAAGGAGTTCTGGGCAATCTGCTGGTTGGGGTCCAAAATGGCGGGTAGTTTGAACATTTCCCGCGAGCATAAAGAAGATGGAATTGTACAAATTTTAGAAGATGCTTTTACAATAAAGAAAATTGAAAACACCTATCGACAAATAAAAATTAAGGATGTATCCCAAGATATGGATTTTTCTACATGTTTTGTGAAAGGTGTGTTGGTCACAGTGTACCCAAGTCTCCTGACATCCAAAGGCTTGGTGATGAAACTTTCTATCAAAGATGCGAGTTCTGGCCCTGACCCAGTAGAAGGCATCTCAGTCTTCCTGAGGGGAAAATTTGTTGAGAAGTGCAAGATAATGAAGGAAAAAGACGTGCTTATGATTACAGGAGCAAAGGTTGAAAGTTCACCAAGGGATGGTCATCAATTTGAAATCATTGGTGACGAAAAAAGCTGTAAATTTCTTAGAGTATGGGTTGTGCGAAATCCCAATTATATGTACACTGCTACTGGTGCTGTTGTTCAGAGACCTTTGTTTGGTACAACAGACTGTGCAGCAATTGGCAGTGTAAAAAAGACAGGAACTGAACCACCAAGCAAAAGAAGCAGGCTTATCCTACAACCTCAAATTGTTAAATATACAAAGCTGGCAGATATACGGGTTAACACCATTGTTAATGTATTTGGTGTGGTGAAGTTCTTTAAGAGCCCTTTCAAGACCAAAGGATCTGATTTTGTTTGCTCATTGAGCTTAGTTGATTCCTCTCTGGCTTCCCTTGAAGAAAGTTTTAAGTTGGTACTTTTTTCAAAGTCAAAGGAAAGGTTGCCATTCATTAGATCTATTGGAGACATTGTACGTTTTCATAATGTTGCTGTTGGCAATTTCAGAGGAGAGATGCAAGGAAAGTTCTTGCCTACATCAACTTGGCTTGTATTTGATGTAAATAGCACAGATAACTATCAACCTCAGGCATCATCATTGAAATCATGCAATTTGACAGAACAAGAAAAAGACGCAATCAAGGAATTACTATTGTGGGCATCACAGAAGGAATCTCTTAGCCAGAAGTTTGTCATTACTAATCTGAAAGACTTGAGTACAAGTCAGACATTTGTAAACCTTCTCTGCCAAGTTGTGTCAAAAAGTTACACTGAAGCAAGCAAGGGTGTCACTTTGACTTTATGGGATGGATCACTCCCTGCCTGTCAATCAACTTCAGTTGAACCTGTCAGTGAACAGGGACAACTTAAGTCAGATGAGCTCATTCGGAAGTCAGCAGACAAATTTGTGGAAGTGTTTCTGTATGACAATCATGTGGAAGGTGAAGTCAGAAAAGTCAGTCCTGGTGATTTGGTTTGCATCAGAAATGTTCATATCAAAGAGCTGGAAGCCGGTGCTGATAAAACAACAGATAAGCCTGAGTTGGCGCTGTCTCGCCCTCATGTTAGTCTCATTGTACATGGAGGTACGATATGTGGGCGTGGCGTGGAGATTGTGTCAGTGAGCAATCCCATGGTCTCAGTAAGTTCGGTAATGAAGTTGATTGCTAAAGCAGAAGCATCAGCCACTTACCAGCATACAGCACAACAATCAGAAGGCACAGTTGATGTTCATGATGGGTCCAAAACAACTGACAGTTGTGAAATTCAACAAGAAAAGGATAATTTTAACAAACAGAGGGACAGTAAATCTTTGATCACAAATGAAGTAAACCGGGCACTTCAGACATCATGTACAATAACAGAGCACCCCTCTATTCCATTCAGTTCTTTGAAAGAGATCAAGACATGCAAGACTGTTCCGTACAAATTCCGCTGTAGAGTCAAGGCAGTGATGTATTTACCATCAGATGTGAAGTCTTTCACACAGCGATCTTGCCATTCTTGTAAATACTTACCTCAAGGAAGTACTAGTTCTGTTTGTTCTGCCACTGTCAATGATATCACCCCATGCTCTTTGTGTGGTCAGGAGATGACTCTTTCTTATTTGTTTTCGTTTGTTCTTGAGGATGATTCTGGCCTTCTCCATGCAATGGTCTTTGATAAGGATGCAAAAACCTTCTTTCCTGGTCTCCCACTGCCAGAGGAATTTTCAGCTCAGGCATCTCTTCAGGAAACTATCCAGGAATGGATGCTATCCATGACAAATAATCCAAATAACTCCATAGAATGTGTGAACCAAGATCCAAAGGGTGATAAAAGACCATGGTTAGAACTCTGCATATTTTCATATCTCCCTGATGAAGATTGCCAAAAGGTTCAGTATAGAGTATTTGATTCTACATTCGTTCATGACAATTGA

Transcript

rna-Spis8643_mrna

ATGGCTCAAGCTTGTCGTCGAAAGGAGTTCTGGGCAATCTGCTGGTTGGGGTCCAAAATGGCGGGTAGTTTGAACATTTCCCGCGAGCATAAAGAAGATGGAATTGTACAAATTTTAGAAGATGCTtttacaataaagaaaattgaaaacaccTATcgacaaataaaaattaaggaTGTATCCCAAGATATGGATTTTTCTACATGTTTTGTGAAAGGTGTGTTGGTCACAGTGTACCCAAGTCTCCTGACATCCAAAGGCTTGGTGATGAAACTTTCTATCAAAGATGCGAGTTCTGGCCCTGACCCAGTAGAAGGCATCTCAGTCTTCCTGAGGGGAAAATTTGTTGAGAAGTGCAAGATAATGAAGGAAAAAGACGTGCTTATGATTACAGGAGCAAAGGTTGAAAGTTCACCAAGGGATGGTCatcaatttgaaatcattggTGACGAAAAAAGCTGTAAATTTCTTAGAGTATGGGTTGTGCGAAATCCCAATTATATGTACACTGCTACTGGTGCTGTTGTTCAGAGACCTTTGTTTGGTACAACAGACTGTGCAGCAATTGGCAGTGTAAAAAAGACAGGAACTGAACCACCAAGCAAAAGAAGCAGGCTTATCCTACAACctcaaattgttaaatatacaaagCTGGCAGATATACGGGTTAACACCATTGTTAATGTATTTGGTGTGGTGAAGTTCTTTAAGAGCCCTTTCAAGACCAAAGGATCTGATTTTGTTTGCTCATTGAGCTTAGTTGATTCCTCTCTGGCTTCCCTTGAAGAAAGTTTTAAGTTGGTacttttttcaaagtcaaaggAAAGGTTGCCATTCATTAGATCTATTGGAGACATTGTACGTTTTCATAATGTTGCTGTTGGCAATTTCAGAGGAGAGATGCAAGGAAAGTTCTTGCCTACATCAACTTGGCTTGTATTTGATGTAAATAGCACAGATAACTATCAACCTCAGGCATCATCATTGAAATCATGCAATTTgacagaacaagaaaaagacGCAATCAAGGAATTACTATTGTGGGCATCACAGAAGGAATCTCTTAGCCAGAAGTTTGTCATTACTAATCTGAAAGACTTGAGTACAAGTCAGACATTTGTAAACCTTCTCTGCCAAGTTGTGTCAAAAAGTTACACTGAAGCAAGCAAGGGTGTCACTTTGACTTTATGGGATGGATCACTCCCTGCCTGTCAATCAACTTCAGTTGAACCTGTCAGTGAACAGGGACAACTTAAGTCAGATGAGCTCATTCGGAAGTCAGCAGACAAATTTGTGGAAGTGTTTCTGTATGACAATCATGTGGAAGGTGAAGTCAGAAAAGTCAGTCCTGGTGATTTGGTTTGCATCAGAAATGTTCATATCAAAGAGCTGGAAGCCGGTGCTGATAAAACAACAGATAAGCCTGAGttGGCGCTGTCTCGCCCTCATGTTAGTCTCATTGTACATGGAGGTACGATATGTGGGCGTGGCGTGGAGATTGTGTCAGTGAGCAATCCCATGGTCTCAGTAAGTTCGGTAATGAAGTTGATTGCTAAAGCAGAAGCATCAGCCACTTACCAGCATACAGCACAACAATCAGAAGGCACAGTTGATGTTCATGATGGGTCCAAAACAACTGACAGTTGTGAAATTCAACAAGAAAAGGATAATTTTAACAAACAGAGGGACAGTAAATCTTTGATCACAAATGAAGTAAACCGGGCACTTCAGACATCATGTACAATAACAGAGCACCCCTCTATTCCATTCAGTTCTTTGAAAGAGATCAAGACATGCAAGACTGTTCCGTACAAATTCCGCTGTAGAGTCAAGGCAGTGATGTATTTACCATCAGATGTGAAGTCTTTCACACAGCGATCTTGCCATTCTTGTAAATACTTACCTCAAGGAAGTACTAGTTCTGTTTGTTCTGCCACTGTCAATGATATCACCCCATGCTCTTTGTGTGGTCAGGAGATGACtctttcttatttgttttcgtttgttcTTGAGGATGATTCTGGCCTTCTCCATGCAATGGTCTTTGATAAGGATGCAAAAACCTTCTTTCCTGGTCTCCCACTGCCAGAGGAATTTTCAGCTCAGGCATCTCTTCAGGAAACTATCCAGGAATGGATGCTATCCATGACAAATAATCCAAATAACTCCATAGAATGTGTGAACCAAGATCCAAAGGGTGATAAAAGACCATGGTTAGAACTCTGCATATTTTCATATCTCCCTGATGAAGATTGCCAAAAGGTTCAGTATAGAGTATTTGATTCTACATTCGTTCATGACAATTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02765 all species →	POT1	Telomeric single stranded DNA binding POT1/CDC13	Domain	Interproscan
PF16686 all species →	POT1PC	ssDNA-binding domain of telomere protection protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011564 all species →	Domain	Telomeric single stranded DNA binding POT1/Cdc13	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR028389 all species →	Family	Protection of telomeres protein 1	Interproscan
IPR032042 all species →	Domain	Protection of telomeres protein 1, ssDNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14513 all species →	PROTECTION OF TELOMERES 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0000781 all species →	Cellular Component	chromosome, telomeric region	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000783 all species →	Cellular Component	nuclear telomere cap complex	Interproscan
GO:0010521 all species →	Molecular Function	telomerase inhibitor activity	Interproscan
GO:0016233 all species →	Biological Process	telomere capping	Interproscan
GO:0032210 all species →	Biological Process	regulation of telomere maintenance via telomerase	Interproscan
GO:0043047 all species →	Molecular Function	single-stranded telomeric DNA binding	Interproscan
GO:0051974 all species →	Biological Process	obsolete negative regulation of telomerase activity	Interproscan
GO:0098505 all species →	Molecular Function	G-rich strand telomeric DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11109	POT1; protection of telomeres protein 1	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.