Gene detail

Detailed information of PFX26678.1 in Stylophora pistillata

Genomic Location: Spis.scaffold120:483540...497834
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

TDRD3

ATGGAGGCAAAGTTGAAAGAATATGGATGGTTTCTCTCCTCCGAAGGGATTGCAGAGTGTGAAAGGGTTTGTAACAAAGAGAAGCCATCTTTCCAGGAACTCTTAAAGGCAGCCCGTAATCTGGACTTGAAACAATATGGAGTGAAACATCTTCCTGATGACATTAACAGAGGAAAAGTGCAATCAGTCAATGGACCTATGGTCCTGCAAGTACAAAAACTAAGAAATGTCTCTGCTCCAAAATCTAATGAAGAATCAAACCATTCACCAAGATTCTTGAAGGTTCAGCTAACAGATGGCCATTTGACTTGTTATGGATTAGAAATTGCTTCCATTCCTGACTTCAGCTTATCAGTTCCCCCTGGGACCAAGGTGTGCTTATCAGGCACCATTACTGTCCAGGAGAGCTTTCTGATGTTGAATGCTAACAACACAAGGGTCTTAGGAGGAGAGGTGGAGAAACTGAAGGAAAAGTGGGAGCTAAATAAGACCTTGGCTAAGCACTCTCGCATGACTGTAAGTGGAGATGGGCCTCCTCCATTTGTCCCCTTTGATCAAGGAACCCAACCAGGAAGTGAGAACAGAGGAAGATCAGCAGAGAACACCAAAGCAGTAAATGGTGTGGTACAAAATAGCAACGAGAAATCGAGAAGTTCACAAATCAAGGATGGTTCTGGTTTACCACCAAGATCCAAAACATCAGAACCTGGACAACATAACAAGCCTGTCAATCAAGAGCAAAGGGAAGGTTCAGCAAAAAACTTTGCACACAACTCCAGGGATGATCGAGCAGAAAACAAAAGGCCAAACACTGAAAAAACAAATGAAAAATATGCATCTGAAGGTAAAACAAATTCAAGTAATCCTAAAGACAGAGATATGAGATCTCATAATTCAGAACCACACAATAATGAGAGAGCCAGAGAAGGAAATCAAGGAAGTGATGACAGACAAAACAACAGAATGGATCGTAGTGAGAGGATGGAAAGAGCAGTTGCAAGAGGGCAGCCTCTAAGACCACAGGATACAAACAGAGGTGGCACAAGACCACGAGGCCGTGGAGGAAAACGAGAGCCAGCAGGCAGGGGAAGGCAGGAAGGTGAAAGTACTGATGATGTAGAAGACTACAGAGTCAGGCAACCCTCTGAGCCAGAATTGTGGGACTTCCTCTCAACAAAATTGCCAAATGTTAAAGATTCCACAAATCCAAGGCTACAAAAATATAATGAAAACAAAAAAACAAATGAAGTTCACCAGGAGAGCCCTCCCCCAAGACCACCACCCCAACAAGAAAATGATACGGAAAAGCCTAAGCAACAAAAGCAAGATTCAAGAGCTGAAAAAGTGGAGAATGTTCCTCCTGCAAGCAAAGAGCAAACTGATGTACAGCGTGACCATACTACCCCCAGAGAGATCGAGAAGTCAAAACAAGAATCCTCACCCCAGAGCAGAGATGGAAGACAACAGTCCAGACAACAACGGGAACCTTACTACAAGCAACAGCAGAATCCTGGGCAGGCAAAAGGAAAAGGCTCTAGAAGGCATGATCATGATTCCAGGCCATACAACCAAAGTTTACCACCTCGACTGCAAAGGAAACAGCAGCAACAACAACAGCAAAGACAGCAACAACAACAGCATCATCATCATCATCATCAACATTATCAACAGCACGGTCATAAACAAGAGACAGATGTGAATAGTGATGGTATTGAAGTTGAGTATGCTGCTGCAGGCAGCCCACCTTCTGTGGCACAGGAAGATGATGCCATTGTAAGGTTTAGTGCAGCAACTGTTAACCCTGAATTTGTCGAGGACTCTCCAAGCCACCATCAACAAACAGTTCAGTTTCGTGACCAGCAGGGTGGTTCATACACCAGTCAGCCATATGCTGCACAAGGCAAGTGGCAAAAAAACTATCGCCAAGGATCTGAGCAGCTGAGACCCCCAAATTTCACCCCTCCTAATGTACAACAACAGCAACAGCAGCACATTGAGTTTGTTACCATGGCAATGGAGTCACAGCGGGCACAGGCTCAGTTTGTTGTCAATCAACCTCAACAGTTTGTGGAGCAGGGTGGAAGGGAACAGGCTGAGATTGGTGTACCACAGGAATACCAGTATACTCAACAGGCACAGCCCCCAGTTCAGGCATATCCTGTGTACCAGTTGCGGCCACCTCAGATGACCCACCAGGCGATGGCACCTCAGCCAGCCATGCCGCAGCAGCCAGTAGCTACACAAATGCCAGCGCAACAGGTGGGTTGGAAGAAGGGTGACCACTGTTTGGCTCCGTGGAGAGATGGACAGTATTACAGTGCCAAGATGGAGGAACTGATGGGTGATGGTGTCAATTGTGTGGTTTCTTTCTTGGATTTTCACAATAGTTGTGATGTTGTACCTCTCTCATCTCTAAGGCCTTTTCCAATAATTGCCTGGGGAGAAAGTAGTAACACACAGCCTCCACCAGCAAGTGCCGTGGCCACAGTGCCATACTACACACAGGGGGCACCAGTTGGCATAGTGACCAGACCCCAGGTAATGATCCCGGTGACAGGTCAGCCCCCTTTCCATGCTGGGACCCGACCCACCATTGTCCATTCTACCCCTGTCCCTGCTCAGGTACAATGGCAGCCTGCTCAGGTCCAGTACCAAGACATTAGACAAGCAGCTTTCCAGCCAATAGTGCATTATGGGGCTGTGCCTCAGTCAACCACAGGGGCACCTGCTCAGGCAGGTTATGGTGTAGCTACAGCAACTGGGGTACATTTTGTCAGGGGTGTAAAGGACACACAAGGACAAGATGTGTACAACAGCATTCCAGAGGCAGGCAGAGGAAGGTCAAGTCCAAATTCAAGTGGTTATTCCAAACCAAGACGGCCAAATAGAGCTACACAAAATTACTATATTCCACCCAGACAACAGAAATTCAAAGACAAAGGGTAG

Transcript

rna-Spis8644_mrna

GGCATGGAGGCAAAGTTGAAAGAATATGGATGGTTTCTCTCCTCCGAAGGGATTGCAGAGTGTGAAAGGGTTTGTAACAAAGAGAAGCCATCTTTCCAGGAACTCTTAAAGGCAGCCCGTAATCTGGACTTGAAACAATATGGAGTGAAACATCTTCCTGATGACATTAACAGAGGAAAAGTGCAATCAGTCAATGGACCTATGGTCCTGCAAGTACAAAAACTAAGAAATGTCTCTGCTCCAAAATCTAATGAAGAATCAAACCATTCACCAAGATTCTTGAAGGTTCAGCTAACAGATGGCCATTTGACTTGTTATGGATTAGAAATTGCTTCCATTCCTGACTTCAGCTTATCAGTTCCCCCTGGGACCAAGGTGTGCTTATCAGGCACCATTACTGTCCAGGAGAGCTTTCTGATGTTGAATGCTAACAACACAAGGGTCTTAGGAGGAGAGGTGGAGAAACTGAAGGAAAAGTGGGAGCTAAATAAGACCTTGGCTAAGCACTCTCGCATGACTGTAAGTGGAGATGGGCCTCCTCCATTTGTCCCCTTTGATCAAGGAACCCAACCAGGAAGTGAGAACAGAGGAAGATCAGCAGAGAACACCAAAGcAGTAAATGGTGTGGTACAAAATAGCAACGAGAAATCGAGAAGTTCACAAATCAAGGATGGTTCTGGTTTACCACCAAGATCCAAAACATCAGAACCTGGACAACATAACAAGCCTGTCAATCAAGAGCAAAGGGAAGGTTCAGCAAAAAACTTTGCACACAACTCCAGGGATGATCGAGCAGAAAACAAAAGGCCaaacactgaaaaaacaaatgaaaaatatgcatCTGAAGgtaaaacaaattcaagtaATCCTAAAGACAGAGATATGAGATCTCATAATTCAGAACCACACAATAATGAGAGAGCCAGAGAAGGAAATCAAGGAAGTGATGACAGACAAAACAACAGAATGGATCGTAGTGAGAGGATGGAAAGAGCAGTTGCAAGAGGGCAGCCTCTAAGACCACAGGATACAAACAGAGGTGGCACAAGACCACGAGGCCGTGGAGGAAAACGAGAGCCAGCAGGCAGGGGAAGGCAGGAAGGTGAAAGTACTGATGATGTAGAAGACTACAGAGTCAGGCAACCCTCTGAGCCAGAATTGTGGGACTTCCTCTCAACAAAATTGCCAAATGTTAAAGATTCCACAAATCCAAGGCtacaaaaatataatgaaaacaaaaaaacaaatgaagttCACCAGGAGAGCCCTCCCCCAAGACCACCACCCCAACAAGAAAATGATACGGAAAAGCCTAAGCAACAAAAGCAAGATTCAAGAGCTGAAAAAGTGGAGAATGTTCCTCCTGCAAGCAAAGAGCAAACTGATGTACAGCGTGACCATACTACCCCCAGAGAGATCGAGAAGTCAAAACAAGAATCCTCACCCCAGAGCAGAGATGGAAGACAACAGTCCAGACAACAACGGGAACCTTACTACAAGCAACAGCAGAATCCTGGGCAGGCAAAAGGAAAAGGCTCTAGAAGGCATGATCATGATTCCAGGCCATACAACCAAAGTTTACCACCTCGACTGCAAAGgaaacagcagcaacaacaacagcaaagacagcaacaacaacagcatcatcatcatcatcatcaacattatCAACAGCACGGTCATAAACAAGAGACAGATGTGAATAGTGATGGTATTGAAGTTGAGTATGCTGCTGCAGGCAGCCCACCTTCTGTGGCACAGGAAGATGATGCCATTGTAAGGTTTAGTGCAGCAACTGTTAACCCTGAATTTGTCGAGGACTCTCCAAGCCACCATCAACAAACAGTTCAGTTTCGTGACCAGCAGGGTGGTTCATACACCAGTCAGCCATATGCTGCACAAGGCAAGTGGCAAAAAAACTATCGCCAAGGATCTGAGCAGCTGAGACCCCCAAATTTCACCCCTCCTAATgtacaacaacagcaacagcagcacATTGAgtttgttaccatggcaatggAGTCACAGCGGGCACAGGCTCAGTTTGTTGTCAATCAACCTCAACAGTTTGTGGAGCAGGGTGGAAGGGAACAGGCTGAGATTGGTGTACCACAGGAATACCAGTATACTCAACAGGCACAGCCCCCAGTTCAGGCATATCCTGTGTACCAGTTGCGGCCACCTCAGATGACCCACCAGGCGATGGCACCTCAGCCAGCCATGCCGCAGCAGCCAGTAGCTACACAAATGCCAGCGCAACAGgtGGGTTGGAAGAAGGGTGACCACTGTTTGGCTCCGTGGAGAGATGGACAGTATTACAGTGCCAAGATGGAGGAACTGATGGGTGATGGTGTCAATTGTGTGGTTTCTTTCTTGGATTTTCACAATAGTTGTGATGTTGTACCTCTCTCATCTCTAAGGCCTTTTCCAATAATTGCCTGgggagAAAGTAGTAACACACAGCCTCCACCAGCAAGTGCCGTGGCCACAGTGCCATACTACACACAGGGGGCACCAGTTGGCATAGTGACCAGACCCCAGGTAATGATCCCGGTGACAGGTCAGCCCCCTTTCCATGCTGGGACCCGACCCACCATTGTCCATTCTACCCCTGTCCCTGCTCAGGTACAATGGCAGCCTGCTCAGGTCCAGTACCAAGACATTAGACAAGCAGCTTTCCAGCCAATAGTGCATTATGGGGCTGTGCCTCAGTCAACCACAGGGGCACCTGCTCAGGCAGGTTATGGTGTAGCTACAGCAACTGGGGTACATTTTGTCAGGGGTGTAAAGGACACACAAGGACAAGATGTGTACAACAGCATTCCAGAGGCAGGCAGAGGAAGGTCAAGTCCAAATTCAAGTGGTTATTCCAAACCAAGACGGCCAAATAGAGCTACACAAAATTACTATATTCCACCCAGACAACAGAAATTCAAAGACAAAGGGTAGTCAGACCATGAAATCTTGCAAAGCACTTATTGGGCCTCAAGGACTGTTAGTTTGAAGTGGATAATGTCATCCGGGGGATGCAGTTCCCTGTAGTGGATAGCTTTGTAGTATCTTTTCTGGCTGGCAATGTATTCTGTGAGTAACATTTTCCACTGTTCAAGCAACTGGGGTGTAGAAATAATCTctaatatgaaaatttaattaatatttagtaaaataaaataacattttctcGCTTTAGAAGATCTGGTTAATGTAGTTGATGTGCATACTACCTGTATTTTGAGGAGTCACCTTTGTTTTTAATGGTAATGTGAAATATTTATCCAGTAGTAAGGGGTGAGTAGGTGAAGCTTAAAATTAGAAAATCTTATTAGGAAAAGGAGATGTGGATTTTATTTTAACCTGGGCTTATGGCAGTTGCAAGATTTCATTAAGTTTATAAAACCACCTCCGAGgtaaaattgctaaaaaaatattaactttATATTGTAATTATGAGACTTGATAGAAGTAGGCAAACAATTTAGTGAATTTTGAATGGCCCTTTTGAGCCCTAGCCCTTTGCAAGAACAATGGCCTTTATCCTCGTGTTTAAACCAAGTCAAAAAACCAGTCCCTGATTGTTCAAAAGATGAATAATGCTATCTaatggataaatcactatccaatGGACAAGTGTTCACTAGTGTACTGCACTATCCAAGGGATAAAACTTTTTCCAGTAGATAGCATTATTCACCCTCTAAGTTGAGGCTAACTGGTAAACTTCAAAAATAGAGAGGGGTAGAAAAGGAGGACAAAGTTTTTCTGAGGTCAACCTCTTCCATTTCacttttctcctttattaatgAATTCATCACAGGAAAGCTTTTCAGTTGTGCAAGAGGACTTCttttaccctttaactcccatgatctgattTTCAATTCTCCCAACTAGCTCTAACACATTCCTTCTTAAATTAGTTGtaagaatttagtgttagatcaagagaacTTATACCTTTTTagtttgattattctcattacctgtttgctggatattgtatggatattagggggagaagttacttgttaatcacttctgggagttagagggttaacacagcaattaaaaatacaaggctttttttttttctcaaaaaaaagtttacatgTAAGTGAACAAGTATTACAGGCCTGGGTCCAGACATATCAAATGAAGGCTTTTCACTGTGAAACTGAgctaaagtaaaagaaaaaaaaaactaaccttTTTATGTGATAGCGAGAGAATGTTTTGGATGGCCAAGCAATGGattgatttctttgcttgtcaacAAAAAAGACATAGCAATTTATAGGGTTTActtgattttacattttttatttcaaataattctACGCATGGCTGATATTGCAAAATTGATGAGCAAACTAGTGAAATTTGTTGATTTAATACAAGTGGATTTCATTAAGGCATcaattttctggaaaaaaaaagcacaggaaaaaatttattttgaaatttatattACAATGAttggaaattttatttggaAGATGATATAGGATGAAGCTAGGTCAGCAGTGGTGGAAACTTGCTTCAATTTTCTATTGTGCTGGCAGTGTTCCTGACTCTATTCTCCAGAACAAAGTTTACAATTTAATCTCTGTGGTTTACTGTATGTAACTGAGCTTCTGCAATAAACTTTACTGTATAAACCAGCCTTACATTGTAAGCATAGCAATGTTACTTTTTAATTACTAATGGTATGGAGTTTCTAGTTCTAATGAATGTGATGTGTCAAATGTGGTAAATTTTAGGTTAATTAGGGTATCGACTGTATGTTAGTAATCTGATCATCAAAATGTTGTGGGACACCATTATTGGAAACATTTGGTTGAGAGGCTTCTATAGCCTGCAGTGATAAATCTTCCAAGGTTGAGCAAGTGGGTGTTGTAAGCTCACCAGTAATGGAGCCACCTTGTTTGATGAGCAGTAGAGGTGaatgcttttcttttctcaacttTTCCTCTGTATTAGCAATCTAACATGGTGGCCAAATATTTCACATGTTCAATTTTCTTGGTCAGTGGAAATGAGCAACACAGAGTTAGAGCCAAAAATTGTTGGTTTCAAGGAAATGGCTTCCTCATCTAACTGGGACATGAAGAATGCGTAAAGTATGGAGAGCATGAAAGATGAGTTAAGTGTTGCTGGTGCATGTGGTACAAACTAGGATCAACGttagcttcttttgtgctcttcaAACTTTCCAAGTGCTTCCAAATTTTATCAATGCAGAGCTGACTCTGGAGCCaattgttttgtaacattttcaacctgatattttaaatatttgataaagaGAAGTTCTCTCTGTGAGggctttgtttattttagtcCTAAGTGTTCATGGTGGGAATATGAAGCAAGTTTgtgcatttgaattttaaaaaacaaatttaccagTTGTATTGTAGTTTGCTTTCCCTCACCCAGACCTCTTTTCCTACAAAGGCCATGTTGCTCATTTTCAATGACCAAGATTGCCACTGGGTACCTGAAATTGCGAGAGTTCATGTGccaagaatttttttgtacTGCAGGCTAAAATTCCCTCATGAAATTTGGTCACAGAcagaggcttttttttttcattaatactAAGGAAAAGCAGCTTTTCCTAGTCTTACAATTATGTCCAGTTATTTCACATATCAGCTTGTAGCTCAAAGTATTCCCAAATGTATCcacaaaaaaagaagttttgtcTTTTCCTAAATAATGTAATGATGTTACTTAATTTGCTTTTATGTTGTTGTAAGGCTGTTGGGTCTTGGTATTACACAATTCACTTTCTAgtatttatatttattgatGGAGAAATAGTAAGACATTTCTCTCTTTGTCTcatattataaaataatgtgattgaaaaaatgaatgaaattagtCACCCAAGACAGCGttattagtataggtaatcataTGATttcgagt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08585 all species →	RMI1_N_C	RMI1, N-terminal OB-fold domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042470 all species →	Homologous_superfamily	RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily	Interproscan
IPR013894 all species →	Domain	RecQ mediated genome instability protein 1, OB-fold domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13681 all species →	SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18404	TDRD3; tudor domain-containing protein 3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.