Gene detail

Detailed information of PFX26688.1 in Stylophora pistillata

Genomic Location: Spis.scaffold120:76829...89813
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

TBL3

ATGGCTCAAATGAGAAACTCTGGCCCTGGTGCTCTTCTGAAATCTAATTACGAGGTGTCCTCAAAGATTGATGCATTCTACACTGGAGGCAAAGTACAGTTCTCATCCAAGGAAGACCACTTGTTCTGTACGTGCAATGACAAGGTTCAAGTTGTTCACGTTGAAACTGGCAAGGTTGTTCACACTCTGCAAGAGGAAGGTGATGTTATAAGCTGCTTTGCTGCAAGTCCTGATGACAAGTTCTGTGTAACGGCAAGTAAAAGTTTGCTCCTGAGACAGTGGGAATGGAACACTGGAGAGCAGATACGAACTTGGAAAGCTGTCCATAGAGCTCCTATCGTTGCAATGACCTTTGACACCACATCAACACTTTTGGCAACTGGTTCAAGTGACAGTACAGTCAAAGTGTGGGATATTATAAAACAATACTACACACACAATTTTAAAGGGTCACAAGGAGTAGTAAGCTTAGTTTCATTTCATCCCAATACAAATGCTCTTCAGCTCTTCTCGGCATCAGATGACTGCAAGATACGAGTCTGGGATTTGAAGAAAAGCAGATGTGTTGCTGTTTTGGAGAGCCACTTCAGTGTTGTGACTTCTCTAGCATTCTCTCATTCTGGAGAAATTATGATAAGCTCAAGTAGAGACAATGTGCTTAATATGTGGAATATTTCTGACAAAAAATTGCAGAAGACAATTCCAGCTTTTGAGGGCATAGAGTCAGTAATTACTCTGCCTAAAGCCAGCAGTTGTCCTGGGTGCAAAGATAAGGAGAAAGAGTATTTCATGACTGCAGGCAGTAAAGGTCAGCTTAGGGTTTGGAGTTTCCAAGATGGTAAATGTGTTTTTACCCAGACTGTTCTCAGTGCCAGGAGTAATAAGGGTAAAGACAATAATGACGAAGATGTCAATCAACAGATTGTTCATGCCACCCTATGCAAGAACCTGGGTCAAGTTGCTGTGGTCACTTTTGATCACAATGTTGTGTTTCATGAGCTGGAATCATTGAAGAGAACTAAGCAGCTGGATTCACCGATCAAGTTGTCAGTAAAGCTAACTGAGAAAGCTCATGATAAGGGTATTAACTCTGTCGCAATATCACCCAATGATAAGCTGTTGGCGACTGGCTCACAAGATAAAACAGCAAAGATTTGGATGATATCCAATGGTTCACTTCTGGGAACGGTACGCGGCCACAAGAAAGGAATTTGGTGCGTAAGATTCTCTCCTGTGGACCAGTGTTTGGCGACTTCATCTGCAGACTCAACCATAAAGATCTGGGCCCTGTCTGACTTTACATGTGTAAAGACGCTTGAGGGACACACCAGCTCCGTTTTGAAGATCTGTTTCTTGACAAGAGGAATGCAGATCGTTTCAAGTGGCTCTGAGGGTCTTCTCAAACTGTGGACCATAAAAACCAATGAATGTGTCAAGACATTTGATCAACATGTGGACAAGGATGTCACAGAGATCGAGCAAGAGCAAGCTCAAGCCGCCACCGAAGAGAATATTTTAAAACAACAAGAGCTGTCAAACTTAATAGCTGATAAGAATTATCTCCAAGCAATAAGTCTGGCCATCACATTAGACCAGCCTTTTAGAGTCATGCACATCATTAAAGATATCCTTCTGACTGAAAATGGAACAGAAGAATTGACAATAGCGATCAAGTCTCTTAGGGAAGATCAACTTGATGCCATATTGAGATTTCTTGTGGAATGGAACACTAACTCGAAGAATTGCCATGTCGCCCAAGCTGTGCTTTCTATTATCTTGAGAACCAACTCTCCTTACGATCTGATGAAAAAGAAAAACATCAAAGACACAATGGAAGCCCTTCTCTCCTATAGTGAAAAACACTTTCAGCGGATGGATCGACTCCTCCAGCAAATGGAGTTTATTGAATACACTTGGCAGTCGATGAAGCTCTCTGGTCCCCTCATGTTGACCACACCAAAAACTGTAGGTGCCACGTCTGAAGCTGCGTCTACAAGTGATACCGCTATGGATAGCAGGCTCGAAGTTCTAGATGACAACGTGCGAGAACCTGTGGTGAGCGGTTTACAGGAGGATTTGCAGGATTTACATCAGGATTTACAACAGGAAACAGTGCAGTACGAGGACGGGAAAGGCGCGGTATATGGAACGGATGATCATGAAAATGGTGGGAATGAAGGGATGAATGAAACGAGTGATCGCGATGATTCGGAAATTGAAAGCGAAGGTGGTAGTGAGCAGGACGCAACGCAGAACGGTCATGTGGATGGGATGTCGGACCAAAATACGGTGCAGTATGGAAGCTCTGATGACACGGGCAGTTCGAAAAAGAGAAAAAGTCCGAATGGAAAATTAGATGCCATGCTAGATATTTCGGGAAAGAAAAAGAAAACAAAGAGGGCATCTGAGGGATTTAAAGTGACGAAGGAAACCAAGTTTAAAATACCTCAGCAAAGGACAATGAAAAGAAAAACTAGAACTGGTCTTGGTGTAAAATCACAGCGCAAGTTAAAACTTAAAACAAAAACTACTTAA

Transcript

rna-Spis8615_mrna

ATGGCTCAAATGAGAAACTCTGGCCCTGGTGCTCTTCTGAAATCTAAttacgaGGTGTCCTCAAAGATTGATGCATTCTACACTGGAGGCAAAGTACAGTTCTCATCCAAGGAAGACCACTTGTTCTGTACGTGCAATGACAAGGTTCAAGTTGTTCACGTTGAAACTGGCAAGGTTGTTCACACTCTGCaagagGAAGGTGATGTTATAAGCTGCTTTGCTGCAAGTCCTGATGACAAGTTCTGTGTAACGGCAAGTAAAAGTTTGCTCCTGAGACAGTGGGAATGGAACACTGGAGAGCAGATACGAACTTGGAAAGCTGTCCATAGAGCTCCTATCGTTGCAATGACCTTTGACACCACATCAACACTTTTGGCAACTGGTTCAAGTGACAGTACAGTCAAAGTGTGGGATATTATAAAACAATACTACACACACAATTTTAAAGGGTCACAAGGAGTAGTAAGCTTAGTTTCATTTCATCCCAATACAAATGCTCTTCAGCTCTTCTCGGCATCAGATGACTGCAAGATACGAGTCTGGGATTTGAAGAAAAGCAGatgtgtTGCTGTTTTGGAGAGCCACTTCAGTGTTGTGACTTCTCTAGCATTCTCTCATTCTGGAGAAATTATGATAAGCTCAAGTAGAGACAATGTGCTTAATATGTGGAATATTTCTGACAAAAAATTGCAGAAGACAATTCCAGCTTTTGAGGGCATAGAGTCAGTAATTACTCTGCCTAAAGCCAGCAGTTGTCCTGGGTGCAAAGATAAGGAGAAAGAGTATTTCATGACTGCAGGCAGTAAAGGTCAGCTTAGGGTTTGGAGTTTCCAAGATGGTAAATGTGTTTTTACCCAGACTGTTCTCAGTGCCAGGAGTAATAAGGGTAAAGACAATAATGACGAAGATGTCAATCAACAGATTGTTCATGCCACCCTATGCAAGAACCTGGGTCAAGTTGCTGTGGTCACTTTTGATCACAATGTTGTGTTTCATGAGCTGGAATCATTGAAGAGAACTAAGCAGCTGGATTCACCGATCAAGTTGTCAGTAAAGCTAACTGAGAAAGCTCATGATAAGGGTATTAACTCTGTCGCAATATCACCCAATGATAAGCTGTTGGCGACTGGCTCACAAGATAAAACAGCAAAGATTTGGATGATATCCAATGGTTCACTTCTGGGAACGGTACGCGGCCACAAGAAAGGAATTTGGTGCGTAAGATTCTCTCCTGTGGACCAGTGTTTGGCGACTTCATCTGCAGACTCAACCATAAAGATCTGGGCCCTGTCTGACTTTACATGTGTAAAGACGCTTGAGGGACACACCAGCTCCGTTTTGAAGATCTGTTTCTTGACAAGAGGAATGCAGATCGTTTCAAGTGGCTCTGAGGGTCTTCTCAAACTGTGGACCATAAAAACCAATGAATGTGTCAAGACATTTGATCAACATGTGGACAAGGATGTCACAGAGATCGAGCAAGAGCAAGCTCAAGCCGCCACCGAAGAGAATATTTTAAAaCAACAAGAGCTGTCAAACTTAATAGCTGATAAGAATTATCTCCAAGCAATAAGTCTGGCCATCACATTAGACCAGCCTTTTAGAGTCATGCACATCATTAAAGATATCCTTCTGACTGAAAATGGAACAGAAGAATTGACAATAGCGATCAAGTCTCTTAGGGAAGATCAACTTGatgCCATATTGAGATTTCTTGTGGAATGGAACACTAACTCGAAGAATTGCCATGTCGCCCAAGCTGtgcTTTCTATTATCTTGAGAACCAACTCTCCTTACGAtctgatgaaaaagaaaaacatcaaagacACAATGGAAGCCCTTCTCTCCTATAGTGAAAAACACTTTCAGCGGATGGATCGACTCCTCCAGCAAATGGAGTTTATTGAATACACTTGGCAGTCGATGAAGCTCTCTGGTCCCCTCATGTTGACCACACCAAAAACTGTAGGTGCCACGTCTGAAGCTGCGTCTACAAGTGATACCGCTATGGATAGCAGGCTCGAAGTTCTAGATGACAACGTGCGAGAACCTGTGGTGAGCGGTTTACAGGAGGATTTGCAGGATTTACATCAGGATTTACAACAGGAAACAGTGCAGTACGAGGACGGGAAAGGCGCGGTATATGGAACGGATGATCATGAAAATGGTGGGAATGAAGGGATGAATGAAACGAGTGATCGCGATGATTCGGAAATTGAAAGCGAAGGTGGTAGTGAGCAGGACGCAACGCAGAACGGTCATGTGGATGGGATGTCGGACCAAAATACGGTGCAGTATGGAAGCTCTGATGACACGGGCAGttcgaaaaagagaaaaagtccgAATGGAAAATTAGATGCCATGCTAGATATTtcgggaaagaaaaagaaaacaaagagggCATCTGAGGGATTTAAAGTGACGAAGGAAACCAAGTTTAAAATACCTCAGCAAAggacaatgaaaagaaaaactagaacTGGTCTTGGTGTAAAATCACAGCGCAagttaaaacttaaaacaaaaactacttaA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF08625 all species →	Utp13	Utp13 specific WD40 associated domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR013934 all species →	Domain	U3 small nucleolar RNA-associated protein 13, C-terminal	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19854 all species →	TRANSDUCIN BETA-LIKE 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000472 all species →	Biological Process	endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000480 all species →	Biological Process	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:0034511 all species →	Molecular Function	U3 snoRNA binding	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14555	UTP13, TBL3; U3 small nucleolar RNA-associated protein 13	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.