Gene detail

Detailed information of PFX26940.1 in Stylophora pistillata

Genomic Location: Spis.scaffold115:154492...175473
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Fbf1

ATGAGAAGGGGTGGAGATACTTTCCCTGGAGCAGGGCCTGGCCGGAGGTCGACCGTTGCACGCAATGCCTCAAGCCGAGCAGCTTTAGATCAGGATTTGGACTCTATTCTGAGTGGTGGTAATGATGATGATATATTTGGTACAAGTGCTCAACAGCAACCAAAGGCTAAAGGGCAGTCTGGAACTTCAGGTTTTGCTAAGAAGGGAACACTGACGTCAGGTGCCACCGATGAAGATTTTTACAGTAGTCTGGCTCAAATGGCTGGGAGTGACATTGATGATGAGGACGAGTCACTGTCTGAGACAGATGCCAAAAAGATGGCTGACAGTCTTGCTGGTCTTGATGACATGGAATCTGATCTCTTTGGGGGATCCTTAGGAAAGAAGAGTACACCAAGCAAACCACCAAAACCTGTTAAGGCTACATCAGAACAGAAGAGGATCAGCACTGACAATAAACTACCCCCTGGAACCTCCCCTGTAACAGAGTCAGCTAAATCCAAGATCGAATCTGTATCATCATCCTCATCTACAAAAACTGGCGAAGCTTCAGAAAAAGCAACTTCCAAGCAAGATTCTGTGAAGGTAAAGGAAGTGAAAAAACCCAGGAAAAAGTTTGATTTTGGAGAGTTTGATGAAGATGACCCCTTGGCTGGTCTATTATCTGATGAAGATGAAGACCCAAAACCCAAGCCGAAGCCTAGAAAGTCTACAGCATCAAAGAGCACTGGTTCATCTGCATTATCTAGTCAAGTTTCAACAGAAGAAAGACCAACATCATCCAGAGGGCGTAGGCCAGCCAATCAGGAATCAGCAAATACACCATCACCTCCTGTTACACCAGAACATCAACCCGCCGTCAGGGGGAGCAAAGATCAAGGTGAAACTGTATCTTCCCCTCCTGGATCACCAGGCATAACGCCAGATAAGGAGGAGGGAGATGTAACACCCTCCCAAACTGCACCGCGGAACAAGGGACAAAGAAAGCCTGCTGCTGGTAAAGCGAAACCAAGTAAGGAAGAGATCAATTTTGACTCAGATGAAGATTTACCAGGTCTGGATGACTCTAAGGAAAACACGCCTCGAGATTCACCCACTCCTCCCGCAAGATCAAAGAAAGAGCAAACCAGCAAACGGAAAACGCAGTACCCACCTGGGGATATATTCGGTGATGATGATGACCTTCCCGCTACCGAGACCAGAAGTGACAGCCCCACACAAGGTTCTCGATTCAGCGAACTGCTCGGTAAAAAGGAAAAGGAAGAAACTAAAAAACAAGTTCCTAAATCTTTGGACGACTTCATGGCCAACATAAGCACAAAGCCTCCGGCAGGAGGAGGTACAACAAGTAAGAAAGTTTCCAGTCCAACATCTGAAGATTCATTCCAGTTTGGTGGTTACATGCCATCTGCAGCCTCCAGTGGTCGATCGCGCGGCCGAGGGGGCCTGGCAAGACCAGACACAGCCCCTAGCTCCACCAAGCGTTCCGTGCGGTTTTCAGATGACCTGGGACTAGATGATGAACTCTTTGGAAGTGAGAGGCCCTCCACAGCTCCGAGTCAAAGGTCGCCCAGAAAGCAAACAAAGAGAGAGGACAGAGATGAAAACATCAATGGATCGTATTCAGACGATAGAGACCAGAAACCAAAAGAAGACAGCAAGCCAACCAGAGGACAGGCGAAGATTAGTGAAGAAACCATGATCGAACAAAAAAAGAATCCACAGACTGAGAAACCAAAAGATAACAGCACACCTGCTACACACGGATCCAAGTCAAGTGGAGGCGGCGGAGGAGACTGGTTAGGACTGAGTGGAGGCGATGACGATGGAGGCCTGGATCCTAGTAGTGCTCCTCCCAAAACAAGCACATCATTTCCTCAGGAGAGCAGAAAGGACACACCCAGCAAACAAGTCCCCACTGAACGTCAGGAGAGGCAACAATCACCGCCGGGAAGAGCAGGCCGACGCCGGGGGGATGGTGATAGCGATGAGTTCTTACGCATGTTGGGAATTACACCTGATGAGCCACCAAAACCAACACCAAAACAGGTCGAGTCAGCTGATGACAGTGGCAAGTCGTCTTTGTTTCCTTGGGAGTCCCCAGGGGGCAGTCCACGAAGAGGAAGGCGGTGGCGTAATCAATCTAGTCCGCAGTCCTCGTTTGATGAACCAGACCCTGCATCTACCCTGGGAGGACCCCTAGATAGGCCACATCAGGGGGGTCCCCTGGAAAAAGATGACTTTGAAAAGAGTAAAATGCAAGAAACACGTCAACAATCCATAAACCAACATACAACAAAACTGCAAATTGAACAGCAACCAGCCGCCGCAGAAATTCAGACGAGAAGAGAATCTCAAACAGCCGCAATCCACGACAGTTCTTCTCCTGCGGCAGCTGTTCCACAAGCGCAAGTGCCACCCCCTGCGTCACGACCACAACAGCCTGGCCCTCGTTTCCCCCAGCAGTACTCCCTGCAGTCGTACACTACCCAACCCATCCCCCATGAAACTAACGTTCCACTGCAAGTGACAGCTCAACCTTCAGCTAAGCAGGTGTATCCTCTGCACCAACATCTCTCTGCTTCACAGGTCCAAACAACTCCTTTTACCTCACCTACCGGTCAAAATGTCTCCCAGACCCTCTCCTACCAACCACATTACCAGTCCCCAGCTGGATTTCAACCATCGCCCCAGGTCGTCCAACCGTCGTCGGTAGAAAGACTTGAAATGTCAAAATTGAAAGCCGAAAGTGAGCTGCAGCAGAATAGACTCTTGGAATATGAACTGGTAAACGAACAGCACGTGCAGCAGAAGACAAGACTAGAAGAGGAAGTGAAGGAGCTTATGAAAAAGGTGCAAGAGAGGGAAAATGTTCGACAGAGAACTGATCTGGACGCTTCCAGTAAACTGTCAGAGTTGGAAGGGAAGGTCCGCCGTTACGAACTTGAGCGGGAACAACTTCTGACTACGATTGAGGCGTTGAAAACAAGACACAAAGATGAACTGGCTAACATAGATGCCTCTCACAAATCTCACTTGAAGACCTTGGAGGAGTCTTACCATCGCCGCGAACAAAGGCTCCAAGATGAAACCGACCTTATTATCAAACAAAACAGCGAGAAGCTAAAAACTTTGGAAACGGAGAAGGCTGATATACGAGCGGCTAGCAACCGAAAACTTTCAACGCTGGAGACAGCGAAAAACAATGAGATAGAAACGTTAAAAGACCTTCATCGGCGAGCGATGGAACAATTACGTCACGAACACGAGGATGAGATGGCACATTTCCGAAGGCTCAAAGAGCAGGAGGTGTCAGCGGCCACAAGTGCGCATGCCCACACCAAGTCGCTTCAGTCCCTTATGGACCAAGTCTTAAACTCGACTCGAGAAGTGAGTGACTTACGACAGAAGATCGAGGTTACTCACAAAAGTGGTTTGGAAGAGCGCGAACTCTCCGCGAGGGCTCGGGACGAGTACCTGAAACAATTGCAGGAAAGGTTACTACGGCAACAATCTGAGAATGACGAGGAGAGGACCAGGTTACAAGGCCTGGTCGCCAAGATGGAGTTGCACATGCGCGAGCAGTCTCGACAGGTCGATCAAGAAAGATGGCGTCTTTCTCAAGACGAGTCAAGAATGAAAGCAGTTCAAGCCGCATTGGAAGACGAGAGACGAATCACAATGGAACAGCTCTCCTTGCAAAGAGCTGAGATTCAGCGCGCCCGAGATGACCTCGTACGAGAACAAAGAACTGCTATGAGTCAGATACAAGAAGAGCGGCGGTCACTGGCCACAGAACGAGCCCAGCTCTCCTCCGCTCACAGAGACCTGATCAGCAGAGAGAAATTGAAGACTGAGACGAGCGTACAGGCTGAGGCTGACCTTGGAGCAACTGCAGTAAAGATTAAAGAGGATGCTGCTGCCCTGAATGTACGGGAGGCTCAGCTGAAACAAGAAGAGGAGAGAATGAGGAGAGAGAAGGAAGAGCTCGAGCGGAAGCGGATTGGATTTCAGGAAGAGAGAGACAGAGTCGGAAGGTTGGGCCTCGAGGTACAGAAGAGATCACGAGAGATCGAGGAACTTTGCACAGATGCTGGTCGGGCGCGCAACGAGGGCGAACAGGCCCTTGAACTTGCAGAACGCGTGCGTGTTAATGCAGAGGCTCAAAGAGCGGAAGCTGAAGGAATGTTCCTGGTCGTGCAGGAAAAAGAACGACAATTGGCACAGGATCGTCTTGCTATCGCTCACGAGCGGCGTATGTTGGAGAAAGACAAGCAATCAGGGCGATGCTGGCAGTGTGAGGGACGGCGAACGAGTCCCGCTGAACAGATCCATGCATCCCAAGTTTCAGTTTCGCCGGCAATGGACTCGTCAGTCCACACCCACCTCTCCCTGCCCATGTCTGTACCTGGGACTCCTGACTTATTAGTGAACACTCTGGAGTTGAAACGGACTCTTCGGAAGTGGTCACATGACAAAGAAAAGGATGAAGAATTCCTAGAACAAGAAGCGCAATTTCTTAATAGATTACAGAAGTCACGTGACACCAGCAAAGTAAAGTCCAGTCTTCCTCTGAATTGA

Transcript

rna-Spis8391_mrna

ggcagaTCTTCCGGGTTAATTTTTGAGTTGACATATTTTCAAGATTCCGATGGAATGAGAAGGGGTGGAGATACTTTCCCTGGAGCAGGGCCTGGCCGGAGGTCGACCGTTGCACGCaatgcCTCAAGCCGAGCAGCTTTAGATCAGGATTTGGACTCTATTCTGAGTGGTGGTAATGATGATGATATATTTGGTACAAGTGCTCAACAGCAACCAAAGGCTAAAGGGCAGTCTGGAACTTCAGGTTTTGCTAAGAAGGGAACACTGACGTCAGGtgcCACCGATGAAGATTTTTACAGTAGTCTGGCTCAAATGGCTGGGAGTGACATTGATGATGAGGACGAGTCACTGTCTGAGACAGATGCCAAAAAGATGGCTGACAGTCTTGCTggtCTTGATGACATGGAATCTGATCTCTTTGGGGGATCCTTAGGAAAGAAGAGTACACCAAGCAAACCACCAAAACCTGTTAAGGCTACATCAGAACAGAAGAGGATCAGCACTGACAATAAACTACCCCCTGGAACCTCCCCTGTAACAGAGTCAGCTAAATCCAAGATCGAATCTGTATCATCATCCTCATCTACAAAAACTGGCGAAGCTTCAGAAAAAGCAACTTCCAAGCAAGATTCTGTGAAGGTAAAGGAAGTGAAAAAACCCaggaaaaagtttgattttggAGAGTTTGATGAAGATGACCCCTTGGCTGGTCTATTAtctgatgaagatgaagacCCAAAACCCAAGCCGAAGCCTAGAAAGTCTACAGCATCAAAGAGCACTGGTTCATCTGCATTATCTAGTCAAGTTTCAACAGAAGAAAGACCAACATCATCCAGAGGGCGTAGGCCAGCCaatcaggaatcagcaaataCACCATCACCTCCTGTTACACCAGAACATCAACCCGCCGTCAGGGGGAGCAAAGATCAAGGTGAAACTGTATCTTCCCCTCCTGGATCACCAGGCATAACGCCAGATAAGGAGGAGGGAGATGTAACACCCTCCCAAACTGCACCGCGGAACAAGGGACAAAGAAAGCCTGCTGCTGGTAAAGCGAAACCAAGTAAGGAAGAGATCAATTTTGACTCAGATGAAGATTTACCAGGTCTGGATGACTCTAAGGAAAACACGCCTCGAGATTCACCCACTCCTCCCGCAAGATCAAAGAAAGAGCAAACCAGCAAACGGAAAACGCAGTACCCACCTGGGGATATATTCGGTGATGATGATGACCTTCCCGCTACCGAGACCAGAAGTGACAGCCCCACACAAGGTTCTCGATTCAGCGAACTGCTCggtaaaaaggaaaaggaagaaactaaaaaacaaGTTCCTAAATCTTTGGACGACTTCATGGCCAACATAAGCACAAAGCCTCCGGCAGGAGGAGGTACAACAAGTAAGAAAGTTTCCAGTCCAACATCTGAAGATTCATTCCAGTTTGGTGGTTACATGCCATCTGCAGCCTCCAGTGGTCGATCGCGCGGCCGAGGGGGCCTGGCAAGACCAGACACAGCCCCTAGCTCCACCAAGCGTTCCGTGCGGTTTTCAGATGACCTGGGACTAGATGATGAACTCTTTGGAAGTGAGAGGCCCTCCACAGCTCCGAGTCAAAGGTCGCCcagaaagcaaacaaagagAGAGGACAGAGATGAAAACATCAATGGATCGTATTCAGACGATAGAGACCAGAAACCAAAAGAAGACAGCAAGCCAACCAGAGGACAGGCGAAGATTAGTGaAGAAACCATGATCgaacaaaaaaagaatccaCAGACTGAGAAACCAAAAGATAACAGCACACCTGCTACACACGGATCCAAGTCAAGTGGAGGCGGCGGAGGAGACTGGTTAGGACTGAGTGGAGGCGATGACGATGGAGGCCTGGATCCTAGTAGTGCTCCTCCCAAAACAAGCACATCATTTCCTCAGGAGAGCAGAAAGGACACACCCAGCAAACAAGTCCCCACTGAACGTCAGGAGAGGCAACAATCACCGCCGGGAAGAGCAGGCCGACGCCGGGGGGATGGTGATAGCGATGAGTTCTTACGCATGTTGGGAATTACACCTGATGAGCCACCAAAACCAACACCAAAACAGGTCGAGTCAGCTGATGACAGTGGCAAGTCGTCTTTGTTTCCTTGGGAGTCCCCAGGGGGCAGTCCACGAAGAGGAAGGCGGTGGCGTAATCAATCTAGTCCGCAGTCCTCGTTTGATGAACCAGACCCTGCATCTACCCTGGGAGGACCCCTAGATAGGCCACATCAGGGGGGTCCCCTGGAAAAAGATGACTTTGAAAAGAGTAAAATGCAAGAAACACGTCAACAATCCATAAACCAACATACAACAAAACTGCAAATTGAACAGCAACCAGCCGCCGCAGAAATTCAGACGAGAAGAGAATCTCAAACAGCCGCAATCCACGACAGTTCTTCTCCTGCGGCAGCTGTTCCACAAGCGCAAGTGCCACCCCCTGCGTCACGACCACAACAGCCTGGCCCTCGTTTCCCCCAGCAGTACTCCCTGCAGTCGTACACTACCCAACCCATCCCCCATGAAACTAACGTTCCACTGCAAGTGACAGCTCAACCTTCAGCTAAGCAGGTGTATCCTCTGCACCAACATCTCTCTGCTTCACAGGTCCAAACAACTCCTTTTACCTCACCTACCGGTCAAAATGTCTCCCAGACCCTCTCCTACCAACCACATTACCAGTCCCCAGCTGGATTTCAACCATCGCCCCAGGTCGTCCAACCGTCGTCGGTAGAAAGACTTGAAATGTCAAAATTGAAAGCCGAAAGTGAGCTGCAGCAGAATAGACTCTTGGAATATGAACTGGTAAACGAACAGCACGTGCAGCAGAAGACAAGACTAGAAGAGGAAGTGAAGGAGCTTATGAAAAAGGTGCAAGAGAGGGAAAATGTTCGACAGAGAACTGATCTGGACGCTTCCAGTAAACTGTCAGAGTTGGAAGGGAAGGTCCGCCGTTACGAACTTGAGCGGGAACAACTTCTGACTACGATTGAGGCGTTGAAAACAAGACACAAAGATGAACTGGCTAACATAGATGCCTCTCACAAATCTCACTTGAAGACCTTGGAGGAGTCTTACCATCGCCGCGAACAAAGGCTCCAAGATGAAACCGACCTTATTATCAAACAAAACAGCGAGAAGCTAAAAACTTTGGAAACGGAGAAGGCTGATATACGAGCGGCTAGCAACCGAAAACTTTCAACGCTGGAGACAGCGAAAAACAATGAGATAGAAACGTTAAAAGACCTTCATCGGCGAGCGATGGAACAATTACGTCACGAACACGAGGATGAGATGGCACATTTCCGAAGGCTCAAAGAGCAGGAGGTGTCAGCGGCCACAAGTGCGCATGCCCACACCAAGTCGCTTCAGTCCCTTATGGACCAAGTCTTAAACTCGACTCGAGAAGTGAGTGACTTACGACAGAAGATCGAGGTTACTCACAAAAGTGGTTTGGAAGAGCGCGAACTCTCCGCGAGGGCTCGGGACGAGTACCTGAAACAATTGCAGGAAAGGTTACTACGGCAACAATCTGAGAATGACGAGGAGAGGACCAGGTTACAAGGCCTGGTCGCCAAGATGGAGTTGCACATGCGCGAGCAGTCTCGACAGGTCGATCAAGAAAGATGGCGTCTTTCTCAAGACGAGTCAAGAATGAAAGCAGTTCAAGCCGCATTGGAAGACGAGAGACGAATCACAATGGAACAGCTCTCCTTGCAAAGAGCTGAGATTCAGCGCGCCCGAGATGACCTCGTAcgagaacaaagaactgctaTGAGTCAGATACAAGAAGAGCGGCGGTCACTGGCCACAGAACGAGCCCAGCTCTCCTCCGCTCACAGAGACCTGATCAGCAGAGAGAAATTGAAGACTGAGACGAGCGTACAGGCTGAGGCTGACCTTGGAGCAACTGCAGTAAAGATTAAAGAGGATGCTGCTGCCCTGAATGTACGGGAGGCTCAGCTGAAACAAGAAGAGGAGAGAATGAGGAGAGAGAAGGAAGAGCTCGAGCGGAAGCGGATTGGATTTCAGGAAGAGAGAGACAGAGTCGGAAGGTTGGGCCTCGAGGTACAGAAGAGATCACGAGAGATCGAGGAACTTTGCACAGATGCTGGTCGGGCGCGCAACGAGGGCGAACAGGCCCTTGAACTTGCAGAACGCGTGCGTGTTAATGCAGAGGCTCAAAGAGCGGAAGCTGAAGGAATGTTCCTGGTCGTGCAGGAAAAAGAACGACAATTGGCACAGGATCGTCTTGCTATCGCTCACGAGCGGCGTATGTTGGAGAAAGACAAGCAATCAGGGCGATGCTGGCAGTGTGAGGGACGGCGAACGAGTCCCGCTGAACAGATCCATGCATCCCAAGTTTCAGTTTCGCCGGCAATGGACTCGTCAGTCCACACCCACCTCTCCCTGCCCATGTCTGTACCTGGGACTCCTGACTTATTAGTGAACACTCTGGAGTTGAAACGGACTCTTCGGAAGTGGTCACATGACAAAGAAAAGGATGAAGAATTCCTAGAACAAGAAGCGCAATTTCTTAATAGATTACAGAAGTCACGTGACACCAGCAAAGTAAAGTCCAGTCTTCCTCTGAATTGAATTGTTTCTTAACGTGGTCAAcGATGTTCATACTAACCTCCAAATTAACAAAAACCGTAGAATGGAATGACATCGAAGGTGAAAGAATACTCCAAAAAGAAACGAGAACTTTAAAGCATGGAGAAGATTGTCAAGGACTGCAAATGAGCACGTAGACCAAATGTAGGCTGAATATCTGAAGTAGTGCATACCCTGGCGTAGCCTTTTAATTAAAAGCTGTGGACCTCGCTACAGTACTTAAACAACtactttttaaaactgtttctctTTCTATGGTATTTTGGTCAGAGGATTAACTATTTTCAGGTACCTGACGTCACATTACAAGATTCACATTCTAATTTGTGGCTGTAGGACTGAAAATTGTAAGAATAATTTGTACAGATAATCATTCAAGGCAGAAATGACAATGTaaagatattttctttgaatAACAAACTGGTAATAAATGTATTCGTATCAAAACCTCTGGCATTGAGTTATTAACATCATTCTAGTGAAATATACAGCCTCATTCCATGCCATCTTACTTAGTGTAAAACATGCTACGAAGTATAAAAGCTCTTCCAGTCGTCTGTAAACCAatag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21007 all species →	FBF1	Fas-binding factor 1	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033561 all species →	Family	Fas-binding factor 1	Interproscan
IPR049390 all species →	Domain	Fas-binding factor 1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33689 all species →	FAS-BINDING FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0090162 all species →	Biological Process	establishment of epithelial cell polarity	Interproscan
GO:0097539 all species →	Cellular Component	ciliary transition fiber	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16471	FBF1, ALB; Fas-binding factor 1	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.