Gene detail

Detailed information of PFX27089.1 in Stylophora pistillata

Genomic Location: Spis.scaffold111:186352...220403
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

NEDD1

ATGACTTCAAAGCTGCGACTTGCTTCGTCTGGAGGCGATGTAAAGATTTGGGACATGCCGGAATTGAACATGGTGAAAGCCTTTAGTCCTCACTCTCAGCCTGTGGGTTCGCTGTGTTGGAGTCCCAACAATCAGTGTTTGGCTAGTGCTGCAAATGACAAAGTTGTTGTCACGTATGTAAAGGGGGATGAGTATGATACAACTGAAATTACTGCTGGGGAGGGGAATACTTGTGTGGCCTTTAATTCATCCTCTCGTTATTTGCTGACTGGTGGAAATAGTAAAACTCTTAATATTTGGGACATGAAAACAAAAAGCATAAAGAAAACATACAAGGATCACAAGGATATTGTTTCTTGTGTAGCTTTTAACTGGAATGACACGTCTATTGCATCAGGGTCAGTGAATGGAGACATACTCCTTCACAATGTCATGACAGGACAAGCCTCAGATCCTCTGAGATTAGCAAAAACACAGGCTGTCAGAGACATTCAGTTTTCACACTTCAAAAAGAGTTTATTGGGTGCTGTAAGTGATGATGGAGCTCTCAATCTTTGGGATTCCAACACAAAAAAACTATCCACATCATTTGCATCTGACCACAAAGGACCTGCAACAGGACTAACTTTCTCACCCATGAATGATATGCTATTGTGTAGTGTGGGACTTGACAAGAGGATTGTGTTCTATGATGTTCAGCAAAAAAAGTCAGTTAAGGTTATGATGGCAGAATCTCCTTTGACATCTGTTGATTTTATGTCTGACGGAGGAACATTGGCAGTAGGTTCAACTAGAGGTAAAATCGACATCTATGACCTGCGTAGTGGATCCAGTCCAGTCAACACAAGAGTGGCACACAAAACATCAGTTCAATCACTTTCATTCCAGTCATCAATTAAGGTTAATAGTTTGGGAAGTAGCAAAAGTTCAAAACCTGTGACTTCAAATACTAAATCCACACCAACTCCAGTGCCAACAGAACCACAGCCTGTTGCAACAGCTACTGTATCAGCCATTCCATCCATCAATGTACCAGATCATGCTTCACACATTCCACTATCAAAACAAAATGGAATTAGACAAGAAGAATCCGAAGATATTTTCTCACCTTTAAGAGAAGTCAAAACAGCGGCTGTAGAGGCTACCAGTAAGCAAACCAATGAGCCACCCCTCCCTAGTTCAGGAGAAACAGTTCCTTCATACAGCTTAAAAGATAACAATCCACTAGATGGATCAGGAGTATTTTCACCAATTGGAAGCAATCTGTCTTCTTCAGCAACCAGGCAGTTGCATCACCCTGCTGAAGTTACAGCCACAGCAAAGGGCAATATAGATCAAGATCTAAACTCACCAAGGACACTTGCAGTAAATAGAGCAAATGAAACAGCAGCTTCAACTGTTCAGACTGTGCGATCATCTGGTGCCAGAGCCCTCCCTGATCTAAGCACTGGCCAGAATCTGGTGAATGACAATGGCACCAGGATCTCATCAGATGTGGTGTTCAGTGGGAGTGTGTCACCCAGCATTACTAGGGCCCAGTTTGAGAGAAATCAGAGAACACGTTTTTTTGGAGAATGTGCTGATTCACAAGATACTAAAGGGAGCGTGCATGCTGAGGCAGATGTAAAGCAAATCAGTATCTCCCCATCTGGATCTCTCAAGAATGGAAATGTAGTTACACAACCAGAAAGCAGAGGGAAAAGGTCACCACTTGGATCTCCATCCAATCACAGAAGGTCAACAGATGGTGGGTCAAGAATACCTGATCAGTCTGTTGGCTATAGCACAGTGCCTAAAGTATCAGAAACAGTGTCACCTGGGGAGAGTTTAATATTTGATAATGTAAACCATAGTCCAGATCCTTTACCAAGTGGAGCTGTTGGTATGGCAACTACAATTACTGATGTGGGTGCAAGTGGTGCCAGTAATGCAGGCCTGTTACCATTTCAGGTGCAATTTATTAAGAACCTGATTGAGGAATCACTGGATGAGTTCAGGGTAGCATTACACAGGGACATTGTTAATGTGCAGGTTGAAATGCTGAGACAGTTTCAAATTCAGAAAAATGAATTGAAAGGAATGCTAGAAAAGTATTCAGTCAATGAAGCCTTGATTACTGAGATTGAAAGGTTAAAAGAAGAGAACAATAGACTTAAATCCAAATATTGA

Transcript

rna-Spis8218_mrna

AAAAAAATGGCGGTAATATTGGGTCTATGTCGGATGTCAATTACTTCTCAGAGCACATTCAGAACATGTAAAAATAGAACTGACTGAGCGAAGGAGGGGGTCGAAAATGACTTCAAAGCTGCGACTTGCTTCGTCTGGAGGCGATGTAAAGATTTGGGACATGCCGGAATTGAACATGGTGAAAGCCTTTAGTCCTCACTCTCAGCCTGTGGGTTCGCTGTGTTGGAGTCCCAACAATCAGTGTTTGGCTAGTGCTGCAAATGACAAAGTTGTTGTCACGTATGTAAAGGGGGATGAGTATGATACAACTGAAATTACTGCTGGGGAGGGGAATACTTGTGTGGCCTTTAATTCATCCTCTCGTTATTTGCTGACTGGTGGAAATAGTAAAACTCTTAATATTTGggacatgaaaacaaaaagcataAAGAAAACATACAAGGATCACAAGGATATTGTTTCTTGTGTAGCTTTTAACTGGAATGACACGTCTATTGCATCAGGGTCAGTGAATGGAGACATACTCCTTCACAATGTCATGACAGGACAAGCCTCAGATCCTCTGAGATTAGCAAAAACACAGGCTGTCAGAGACATTCAGTTTTCACACTTCAAAAAGAGTTTATTGGGTGCTGTAAGTGATGATGGAGCTCTCAATCTTTGGGATTCCAACACAAAAAAACTATCCACATCATTTGCATCTGACCACAAAGGACCTGCAACAGGACTAACTTTCTCACCCATGAATGATATGCTATTGTGTAGTGTGGGACTTGACAAGAGGATTGTGTTCTATGATGTTCAGCAAAAAAAGTCAGTTAAGGTTATGATGGCAGAATCTCCTTTGACATCTGTTGATTTTATGTCTGACGGAGGAACATTGGCAGTAGGTTCAACTAGAGGTAAAATCGACATCTATGACCTGCGTAGTGGATCCAGTCCAGTCAACACAAGAGTGGCACACAAAACATCAGTTCAATCACTTTCATTCCAGTCATCAATTAAGGTTAATAGTTTGGGAAGTAGCAAAAGTTCAAAACCTGTGACTTCAAATACTAAATCCACACCAACTCCAGTGCCAACAGAACCACAGCCTGTTGCAACAGCTACTGTATCAGCCATTCCATCCATCAATGTACCAGATCATGCTTCACACATTCcactatcaaaacaaaatggaattaGACAAGAAGAATCCGAAGATATTTTCTCACCTTTAAGAGAAGTCAAAACAGCGGCTGTAGAGGCTACCAGTAAGCAAACCAATGAGCCACCCCTCCCTAGTTCAGGAGAAACAGTTCCTTCATACAGCTTAAAAGATAACAATCCACTAGATGGATCAGGAGTATTTTCACCAATTGGAAGCAATCTGTCTTCTTCAGCAACCAGGCAGTTGCATCACCCTGCTGAAGTTACAGCCACAGCAAAGGGCAATATAGATCAAGATCTAAACTCACCAAGGACACTTGCAGTAAATAGAGCAAATGAAACAGCAGCTTCAACTGTTCAGACTGTGCGATCATCTGGTGCCAGAGCCCTCCCTGATCTAAGCACTGGCCAGAATCTGGTGAATGACAATGGCACCAGGATCTCATCAGATGTGGTGTTCAGTGGGAGTGTGTCACCCAGCATTACTAGGGCCCAGTTTGAGAGAAATCAGAGAACACGTTTTTTTGGAGAATGTGCTGATTCACAAGATACTAAAGGGAGCGTGCATGCTGAGGCAGATGTAAAGCAAATCAGTATCTCCCCATCTGGATCTCTCAAGAATGGAAATGTAGTTACACAACCAGAAAGCAGAGGGAAAAGgTCACCACTTGGATCTCCATCCAATCACAGAAGGTCAACAGATGGTGGGTCAAGAATACCTGATCAGTCTGTTGGCTATAGCACAGTGCCTAAAGTATCAGAAACAGTGTCACCTGGGGAGAGTTTAatatttgataatgtaaaccaTAGTCCAGATCCTTTACCAAGTGGAGCTGTTGGTATGGCAACTACAATTACTGATGTGGGTGCAAGTGGTGCCAGTAATGCAGGCCTGTTACCATTTCAGGTGCAATTTATTAAGAACCTGATTGAGGAATCACTGGATGAGTTCAGGGTAGCATTACACAGGGACATTGTTAATGTGCAGGTTGAAATGCTGAGACAGTTTCAAATTCAGAAAaaTGAATTGAAAGGAATGCTAGAAAAGTATTCAGTCAATGAAGCCTTGATTACTGAGATTGAAAGGTTAAAAGAAGAGAACAATAGACTTAAATCCAAATATTGATGTTGTTAGCAGGTCTTCCTTTCACACACAGTAGATTGAGATACAGACAGATACAACTGAAAGAGATGGGCTGTGTTCAAACACTGTAAATAATAAGCACCTTACTGACTTGAAAATGTATCATATAAAATTTCATGTTGTTGTAGTTTTACAGTTTCAAGAAACAGCTTTAATCAGatggcttttttttaataatcagcTTGTGAGAAATGTCACATCAGGGTTTAGTTGTTTGAGCAAGCAGAGAGGAATTCAAAAAAATGAAACTCACCAAGGAGATGCACAGTTAGTTGGTATCCAATTGAAAgagttttctatttatttatttatttcttttggtacATCCTCACATGCTCACCCAGCTGACTTTGTATTAATCTTCACCAAAATGAGGTTAATTTTAATAGACCTGCGATAACATTTTATAGCACAATTGGTAAAAAGGAATGATCAATGGTGTTGTTTtaatggtttttttgtttttgtttttgtgtaaaGTGTGAGTTAATAACCACTAATATTGCACATTCGAGTTACTgtgaaaaatctgattggttgagagcaaTCAATCAATAGACAAAAGCATATGAAGTTGATAAGTGCAATATCTGCACTAAATAATGCATTTATCATgttgagttcaaagtctgcctagtcTCCAAGCCCCTTGTCTGGGTagtgttttcaaacttttccaaaCTCAGAGAGAAACTAATAATAGCTGATTCAATTAAGTATCATCTTGCAGATTGTTTAGAAattgtataataaaacaattcttaaatttGGTTTTTGCATGATAACTTgaattattaaccctttaactcccatgaatgaccaagacagattttctccttataacttcaatacaatatcaagcaga

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR052818 all species →	Family	NEDD1 Spindle Assembly Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44414 all species →	PROTEIN NEDD1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000242 all species →	Cellular Component	pericentriolar material	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0007020 all species →	Biological Process	microtubule nucleation	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0043015 all species →	Molecular Function	gamma-tubulin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16547	NEDD1; protein NEDD1	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.