Gene detail

Detailed information of PFX27172.1 in Stylophora pistillata

Genomic Location: Spis.scaffold109:544978...561186
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Dcr-1

ATGAAATCCCTTCGGGTTTTAGACCCTGAAGGAGTGGAGCGTCGTCAAAGACGTAGGCTAAAGAGACGAAGATATGTCACCCCAGGGCCAAACTTCTTATGGCATGTTGACGGATGGGATAAGCTTGCGCCCTTTGGCTTTTTCTTTCATAGCGCAGTAGACGGCTTCTCAAGGCGAATTCTTTGGTTAGAAGTCGGTTCCACGAACAAAAATCTCAGGGTTATTGCCTCAAACTACCTAAATGCTCTTCTACAACTTGGAGGGGTTCCGAGAAGGATGCGCTGTGACAGGGGAACCGAAAACACAATCATTGGCACTCTTCAACAATTTTTTCGTTGGCATGACGATGACCATTTTTCTGGAAGTGGAAGTTTCATCGAAGGAAAAAGCACCGGAAATCAACGCATAGAAGCTTGGTGGTCTACATTTCGAGAGGGTGGAGGAGGATGGTGGATAAACTTTTTTAAAGACCTCCATGATTGTGGTTTGTACCATGACGATTACCTCGTCACGGAATGTCTCAGATTTTTTCTCTTTCCTATCCTTCACCACGATTTATATCTCGTAGAAGAGTTGTGGAACACGCATAACATTCAGCGACAACAACGACTGGAAGAGGAGAGTGGAAAACCAGACGTCATGTTTTTTACACCCGAAATCTATGGAACACACCACTACTTGGTAAATGTCAACATCGACGATGTAAATATGTGCAAAGACAGTGGAGTGAAACTTATTGAAAGCAGAGCAATACTAACGATGGCCTGTTTAAGCGAGTCCACTACGGCAAGCAGCGAAGAGGAGAAGAAAGAACAGAGGCTTATTGATGTCATGTTCCTCTGTGACGAGTGGAAATCTTCGAAGGGTGGATTATCAACTTTCAATCGAGAATTTGCTATTAACTTGGCAGAAACGACAACTGGTAGCCTGAAAATTCACTGCTACGTTTCGCAAAGCGATGATCGAGACAGAGAGGATGCCAAACAACATGGTGTGAATTTAATTAACGCTGAGACTGTTCCCGGATCGCGTGATCCCTTGGATTGGTTAAAGATTCCACATCCCACGCTTCAGCATCCACAGGTTGTCATTGGTCACGGCAGAAAACTTGGAACTCCTGCGTGCCACTTTGTACGAACTACAAGATGTAAATGGATTCAATTCGTCCACGTCTTCTGTGAGGACCTTGGGAAATACAAGAAAACAACTTCGGCTGCAACAGATACGATGGAAGAGAACGAGGAGAAGCACAAGATGGAGATTGAGTTGTGTAAAGCAGCGGATGCAGTTGTCGCCGTTGGCTCCCGTCTACAACAGAAGTACAGCAGAAGTCTCCTTAATGTTAAGGTGGAGATTATTACTCCTGGGATCTTTGAAAAGTTTTCCAGTGAATCAAAGTTGGCTGTAAATAGATCAGTAGTTAAGAAATTTAACTTGTTTATGTTTGGCCGAGCTACCTTTGAGGATCTTTCCCTCAAAGGATACGATATTGTTGCAAATGCCATAGGTTCTCTTGGTAAGAACTTTGAGCTGACATTTGTTGGCTCACCTCCTGGTGAACATCAAAACGTTGAGCAATGGTTTCTTAACAACACTCGCATCAACCGCAACCAACTAACCATCCGTGGATACTGCAGTGAACAAGAGGAACTTAAAATGATGTTCTATCAGTCAGACTTGGTTGCTCTGCCATCCCGTACCGAGGGGTTCGGGTTAGTGCCACTCGAGGCCATTTCTGCTGGCGTTCCTATACTTGTTTCTGGTGAATCTGGTATAGCTGAGGCTTTGCAAGAAGTAGAAGGTGGAAAGGCTGTCATTGTTGAATCAGATGAAGATGCAGATGAATGGGCACAAAGGATTAGAGAGATCTTTGAGGAAAGCGTAGAAGAGAGAGAAGCCAATGCCATGAAGCTTCGTGAGAACTACAGGAAGGCTTTTTCTTGGAGAACAGAATGTGAGAGATTTAAAGCAATGATTGAGAGACTAATGCAAAAGGAACATGCAGATGATGAGGTAAATATTACTACTGGTGGAAGTGAATATTACTGTGAGAGTGGAAAGAAGAGAAAACTTACTGCTACAGAGAATTTGCGCCAGAAATGTAACACGCAAATGATAGCGGACAAGTCCGTAGCAGACAGCGTCGAAGGACTGATCGGAGCGTATCTAATTTCCTGTGGTTATCTTGGTGCACTGCGATTCATGAAGTTTCTATGGCTAAAACTTTTACCTGAAGTTGATTCCGACGACGGCATTGATTCGTTGGCAGAGAATAGCAAATCGGGTTGCTATGCCAGATTTTGGCCGGATCAGACAAATGTAACAGCAACGCAAGGTAAAGGAGATATGGTTTCCCGTCTCACTTCTGGCCTGGAAAACTTTGAAAATAAAGCAATCTCGTACAATTTTCAACAAAAGTTGTATTTGGTAGAAGCTCTAACTCACGCGTCGTACCACGAAAACCGTGTCACACCAAGTTATGAACGACTCGAGTTCCTTGGCGATGCTTTGCTCGACTTTTTGGTCACGCAACATTTGTACTTCCGTCGTGTCAACTTGTCACCCGGACAACTGACTGATATTCGACAGGCCTTGGTGAACAATAACATCTTTGCCACCCTTGCCGTGAAACATGACTACCACAAGTTTCTCAAGCATATGTCTCCTAAGTGGTTACAAACTGTGAAGAACTTTCTGGAGAGAGTGGAAGATGAGGTAGAAGAGAGGAAACACAATCGCCCTCAAACGGTCACAGCTGACCCATTTATTATCGTGTCTGAAGAAGAAGAAGAAGGAATCGAGGCGCCTAAAGTTCTTGGTGACATCTTTGAATCAGTAGCAGGCGCGATATTTTTGGACAGCGGTATGGATTTGACTAAAACGTGGGGCGTGTACTACCGCATGATGAAACCCTACATCGATCATTACTCGGTGAATATACCGCGAAATCCCATCAGACATGTCTACGAGGAAGACGAGAGGGCCGACTTTGGGAAAGCGAAGACCCTTGATGATGGGAAGATCCAGTGTACTCTGAGAGTGCACTGGGGAGAGTTCAATGGAAAGGGAACGAACATGAAGATAGCTAAAGCTACAGCTGCCAAGCTTGCCATTGAAAGACTGGAAAAGAAATCTTTACAAGAGCACTCCGCGGTATACGAAGAAGATTGA

Transcript

rna-Spis8145_mrna

ATGAAATCCCTTCGGGTTTTAGACCCTGAAGGAGTGGAGCGTCGTCAAAGACGTAGGCTAAAGAGACGAAGATATGTCACCCCAGGGCCAAACTTCTTATGGCATGTTGACGGATGGGATAAGCTTGCGCCCTTTGGCTTTTTCTTTCATAGCGCAGTAGACGGCTTCTCAAGGCGAATTCTTTGGTTAGAAGTCGGTTCCACGAACAAAAATCTCAGGGTTATTGCCTCAAACTACCTAAATGCTCTTCTACAACTTGGAGGGGTTCCGAGAAGGATGCGCTGTGACAGGGGAACCGAAAACACAATCATTGGCactcttcaacaattttttcgttGGCATGACGATGACCATTTTTCTGGAAGTGGAAGTTTCATCGAAGGAAAAAGCACCGGAAATCAACGCATAGAAGCTTGGTGGTCTACATTTCGAGAGGGTGGAGGAGGATGGTggataaacttttttaaagaccTCCATGATTGTGGTTTGTACCATGACGATTACCTCGTCACGGAATGTCTcagattttttctctttcctatCCTTCACCACGATTTATATCTCGTAGAAGAGTTGTGGAACACGCATAACATTCAGCGACAACAACGACTGGAAGAGGAGAGTGGAAAACCAGACGTCATGTTTTTTACACCCGAAATCTATGGAACACACCACTACTTGGTAAATGTCAACATCGACGATGTAAATATGTGCAAAGACAGTGGAGTGAAACTTATTGAAAGCAGAGCAATACTAACGATGGCCTGTTTAAGCGAGTCCACTACGGCAAGCAGCGAAGAGGAGAAGAAAGAACAGAGGCTTATTGATGTCATGTTCCTCTGTGACGAGTGGAAATCTTCGAAGGGTGGATTATCAACTTTCAATCGAGAATTTGCTATTAACTTGGCAGAAACGACAACTGGTAGCCTGAAAATTCACTGCTACGTTTCGCAAAGCGATGATCGAGACAGAGAGGATGCCAAACAACATGGTGTGAATTTAATTAACGCTGAGACTGTTCCCGGATCGCGTGATCCCTTGGATTGGTTAAAGATTCCACATCCCACGCTTCAGCATCCACAGGTTGTCATTGGTCACGGCAGAAAACTTGGAACTCCTGCGTGCCACTTTGTACGAACTACAAGATGTAAATGGATTCAATTCGTCCACGTCTTCTGTGAGGACCTTgggaaatacaagaaaacaacttcgGCTGCAACAGATACGATGGAAGAGAACGAGGAGAAGCACAAGATGGAGATTGAGTTGTGTAAAGCAGCGGATGCAGTTGTCGCCGTTGGCTCCCGTCTACAACAGAAGTACAGCAGAAGTCTCCTTAATGTTAAGGTGGAGATTATTACTCCTGGgatctttgaaaagttttccaGTGAATCAAAGTTGGCTGTAAATAGATCAGTAGTTAAGAAATTTAACTTGTTTATGTTTGGCCGAGCTACCTTTGAGGATCTTTCCCTCAAAGGATACGATATTGTTGCAAATGCCATAGGTTCTCTTGGTAAGAACTTTGAGCTGACATTTGTTGGCTCACCTCCTGGTGAACATCAAAACGTTGAGCAATGGTTTCTTAACAACACTCGCATCAACCGCAACCAACTAACCATCCGTGGATACTGCAGTGAACAAGAGGAACTTAAAATGATGTTCTATCAGTCAGACTTGGTTGCTCTGCCATCCCGTACCGAGGGGTTCGGGTTAGTGCCACTCGAGGCCATTTCTGCTGGCGTTCCTATACTTGTTTCTGGTGAATCTGGTATAGCTGAGGCTTTGCAAGAAGTAGAAGGTGGAAAGGCTGTCATTGTTGAATCAGATGAAGATGCAGATGAATGGGCACAAAGGATTAGAGAGATCTTTGAGGAAAGCGTAGAAGAGAGAGAAGCCAATGCCATGAAGCTTCGTGAGAACTACAGGAAGGCTTTTTCTTGGAGAACAGAATGTGAGAGATTTAAAGCAATGATTGAGAGACTAATGCAAAAGGAACATGCAGATGATGAGGTAAATATTACTACTGGTGGAAGTGAATATTACTGTGAGAgtggaaagaagagaaaacttacTGCTACAGAGAATTTGCGCCAGAAATGTAACACGCAAATGATAGCGGACAAGTCCGTAGCAGACAGCGTCGAAGGACTGATCGGAGCGTATCTAATTTCCTGTGGTTATCTTGGTGCACTGCGATTCATGAAGTTTCTATGGCTAAAACTTTTACCTGAAGTTGATTCCGACGACGGCATTGATTCGTTGGCAGAGAATAGCAAATCGGGTTGCTATGCCAGATTTTGGCCGGATCAGACAAATGTAACAGCAACGCAAGGTAAAGGAGATATGGTTTCCCGTCTCACTTCTGGCctggaaaactttgaaaataaagcaatCTCGTACAATTTTCAACAAAAGTTGTATTTGGTAGAAGCTCTAACTCACGCGTCGTACCACGAAAACCGTGTCACACCAAGTTATGAACGACTCGAGTTCCTTGGCGATGCTTTGCTCGACTTTTTGGTCACGCAACATTTGTACTTCCGTCGTGTCAACTTGTCACCCGGACAACTGACTGATATTCGACAGGCCTTGGTGAACAATAACATCTTTGCCACCCTTGCCGTGAAACATGACTACCACAAGTTTCTCAAGCATATGTCTCCTAAGTGGTTACAAACTGTGAAGAACTTTCTGGAGAGAGTGGAAGATGAGGTAGAAGAGAGGAAACACAATCGCCCTCAAACGGTCACAGCTGACCCATTTATTATCGtgtctgaagaagaagaagaaggaatcGAGGCGCCTAAAGTTCTTGGTGACATCTTTGAATCAGTAGCAGGCGCGATATTTTTGGACAGCGGTATGGATTTGACTAAAACGTGGGGCGTGTACTACCGCATGATGAAACCCTACATCGATCATTACTCGGTGAATATACCGCGAAATCCCATCAGACATGTCTACGAGGAAGACGAGAGGGCCGACTTTGGGAAAGCGAAGACCCTTGATGATGGGAAGATCCAGTGTACTCTGAGAGTGCACTGGGGAGAGTTCAATGGAAAGGGAACGAACATGAAGATAGCTAAAGCTACAGCTGCCAAGCTTGCCATTGAAAGACTGGAAAAGAAATCTTTACAAGAGCACTCCGCGGTATACGAAGAAGATTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan
PF20932 all species →	Dicer_dsRBD	Dicer, dsRNA-binding domain	Domain	Interproscan
PF00636 all species →	Ribonuclease_3	Ribonuclease III domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000999 all species →	Domain	Ribonuclease III domain	Interproscan
IPR044441 all species →	Domain	Dicer, double-stranded RNA-binding domain	Interproscan
IPR036389 all species →	Homologous_superfamily	Ribonuclease III, endonuclease domain superfamily	Interproscan
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14950 all species →	DICER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004525 all species →	Molecular Function	ribonuclease III activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0031054 all species →	Biological Process	pre-miRNA processing	Interproscan
GO:0004530 all species →	Molecular Function	deoxyribonuclease I activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006309 all species →	Biological Process	apoptotic DNA fragmentation	Interproscan
GO:0016442 all species →	Cellular Component	RISC complex	Interproscan
GO:0090501 all species →	Biological Process	obsolete RNA phosphodiester bond hydrolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX27172.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.