Gene detail

Detailed information of PFX27173.1 in Stylophora pistillata

Genomic Location: Spis.scaffold109:530390...543339
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Dicer1

ATGCTTATAAAAGAACTCGCTCATGAAGTAAGAGGAAAGTACATGCATAAAGACGACGGGCGAAGAACTTTCTTCCTAGTAAATACAGTTCTGTTAGCCAGTCAGCAAGCAAAAGTGATCGCAAATCATACAGACCTGAGAGTCAAGTGTTATGTGGGAGAGATGGGTGTTGATGGCTGGGAAAAGTCGAGATGGGAAAGCGAGTTCAATGACAACAACGTTTTGGTCATGACAGCCCAGGTATTTCTTAACCTACTATCAGCTGGCTTCACAAAGCTTTCACAAGTGAATCTCCTGATCTTTGATGAATGCCATCATGCAAGGAAGAATCATCCATATGCGCAGATAATGGAGTTCTTCAATAGATCAAAACAATTAAAACCAACTGAAGTAACTCCATTACCCAAAATTATGGGTCTAACAGCCTCTGTGGTGAACGGGAAAGTAAAGCTACTCAGAATCGAATCAGAAATAAAACAGCTGGAATGCACCATGTGGTCCAAGTGTGACACAACTTGTGATGAGGATGTTGAAAACTTTGCCACTAAACCCAAAGAACAGGTCCTAAGCTACTCAAATGAAATTAGTGAGGACTTAAATAAGCTAATTCAACACCTATCACAGGTGTTAACGCAAGGAATGGATTTTCCTGGAGACTGTAAAGTGTCTAATGATGCACATGGTTTTACAAAGTGGGCACTTGAGGAATGTACCAGGACATTGCATGAACTGGGCCCTTGGGCTGCCTATATAGTTGCAGCATATCTAATCAATGAGTTAGAATCTGATCCAGAGAAGAGGCTCTGCGCCATTGTGTTTGTCGAAAAGCGATACACAGCACTCATCCTCAGTGAACAAATTAACCAGGCTGCCAAACTGAACCATGACCTATCATTTGTCAAAAGTAATTTTGTGACTGGTCATGGCACAGGTGGAAAGGTTAACTTCTCGAGTGAGACTGAGATGAACTTCAAGAAACAGGAAGAAGTGCTTCGGAAGTTTAGAAGACATGAGTTCAACGTACTGATTGCCACTTCTGTTGTTGAGGAGGGCTTAGATGTTCCAAAGTGTAATGTTGTATGTTGCTTTGACTTCCCAAAGAACTTCAGATCTTATGTTCAGTCAAAAGGGAGAGCTCGTGCCAGAGATTCAAATTATTACATGCTTGTACCCCAAGAACTGAAAGGGGAGAAAGAAAATGACTTAGAGATTCTGCGTGAAATTGAGAAGATCTTGTTTAAAAGATGCCATGACCGCACACAGCCATCTATGAGGGAGTGTATTGAATCATTAGACACAGATGCATTCCAGCCCTATGTACCAGAAGATGGAGGAGGTGCTTGTGTGACAATGAGTAACAGTATTTCCATACTTTCCAAGTATTGTTCAAAGCTTCCGGGAGACCGGTTTACTCAGCCTACACCTGTTTACAAGATTGAGGAAATTGGGAAAGATAGTTACAGTGTATCTTCTGGACTTCAACAGGGTGAACCAATGCGGAGTAAGAAGTATGCCAAGATGGCTGCTGCTTACGAAGCTTGTATAGTGCTTCACAGAAATGGCGAGCTCGATGATAACTTGCGGCCAAAACGCTCATTGTCTGACGATGAAAGTGAGTTAGAAGAAGAAGAAGAAGCAGCAGCAGCTGAGCCTGGCGGAAATGAATCTAAACCTGGATCAAAGAAGAGAAAACGTCAGTACACGAGAAAGGTTCCTGAAGTATTCGTCGGTAGCCTGGTACAGGATGGTCAGTCCCAGTTCCTCACGACCATCACCATACAAGTCACAAAACTTATTCAACCACAAGAGTTTGTTATAAGTGAGCGACTGTTCCTCAACGACACTTGCACGTTTGGAATGCTGACAAATAAAAGAGTTCCTAGGATGCGATCGTTCAAACTGTATCCTAACTATGGCGAGGTCACAGTATCCTTGCAGTGTCACACATCTCCTTTGCGTAGGAACAACACCAAACAAGACCTGGACATTCTCCGTGAGTTTCATCTCTTTCTCTTCAGTCACGTTCTGCGCTCTCCTGTGGAATTCACACCAGAAAGTATGGATGGTTACTTCATTGTTATGGTAAAGGATTCTGGAAGGAGTGTTGACTTTGATCGCATGAGAGAGGAACTTTCGCGCGCACGCAAACAAAGCCGTGGAAATGAGCCTATCGTCGAAGACGCAGTAGTGACCAAAAACTACGTTCAATGTTCACAAAAGTACGCTGTTTTGAAGGTTCGTGGCGACCTGACCCCCCTGTCTCCCTTCCCGGAAAAGTCACAGGGAAACACTTATGAAGAATATTTTCGCCGTAAATACGGAGAAATGGGACGCATTGCTGACAAAAATCAACCTCTTGTTGAAGCGAAAGAGTTATCCGGTAGAGTGAATTTCCTGGTGGACCGAAAAGTAGGAACAAAACACAAGCGCCAAGTGATTTATCTTGTTCCAGAATTGTGTAACCAGATTCCCATTCGCGCTTCTCTTCTTAGCGTGTCACAGATTCTGCCATCAGTTCTTCAGCGTGTAACCTCCCTCCTTCTCGTTGCCGATCTCAAGACCATGGTTGCCGGTGAAGGCGACACAACAGATGAATCAAGTCTCCCTCCTATTGGTGCTGAAGAGGGCTCTCACCGACCCAATCAAGCAGGAGAAGTTGAAGACGATGGTTTGGATCTTGAAGACAGTGATGATGCAGAGTCTGAATTCCCGGGGCTTTTCTCCGACATCAGATCGATGTTCCGTTACATTCCATCATCTGTAAACCACCCCAACTCCTCTCTCGTTCTTCAAGCAGTTACCACCACCCATAGCGGAGATGCGTTTAATTTGGAGAGGCTAGAGATGTTGGGAGACTCATTTCTGAAGCTGGCCGTGTCCCTTCATCTCTTCTGCACATACAGCGATAAAGACGAAGGTAAGCTGACCCGGCGTAAGACAAACCAGATTAGTAATTTAGCGTTGTACCGAGCAGCCACTAAGAAATCTTTGGGCGAGTATCTCCAGAGCACGCAGTTGGCTCGCGACGTTTGGTGTCCTACGGGATGTCAGTTTGGCGACGTACCACCGAATCGCACCACAGAAGAGAGAGAAAAGAGAAAGAAGAGAAAACTTACTGCTACAGAGCATGCGTCCCAGAAATGCATCACGCAAATGATAGGGGATAAGTCCATAGCAGACAGCATCGAAGCACTGATCGGAGCATATCTAATATCCGATGGTTATCTTGGTGCATTGCGATTCATGAAGTTTCTAGGGCTAAAAATTTTACCTGAGGTTGACCCCAACGACGGTATTGAATCGCTGGCAAAGAATAGCAAATCGGGTTGCTATGCCAGATTTTGGCCGGATCAGACAAATGTAACAGCAACGCAGGGTAAAGGAGACGTGGTTTTCCGCCTCACATCAGGTCTGGAAAACTTTGAGAGCAATTCAATCTTGTACAAATTTCAACAAAAGTTGTATTTGGTAGAAGCGCTAACTCACGCGTCTTACCACGAAAACCGCGCGACGCCAAGTTATCAAAGACTCGAGTTCCTCGGTGATGCTCTGCTGGACTTTTTGGTCACGCAGCATTTGTACTTCCGTCACGTTAACTTGTCACCCGGAGATCTGACCGATATTCGACAGGCGTTGGTCCCCGCTGACCCATTTATTATCGTGTCTGAAGAAGAAGAAGAAGAAGAAGAAGGAATCGAGGCACCTAAAGTTCTTGGTGACATCTTTGAATCCGTTGCAGGGGCGATATTTTTGGACAGCGGTATGGATTTGACTAAAATCTGGGGTGTGTACTACCGCATGATGGAACCCTGCATCGGGATATTGATATGGGCAGCTACGAGAGAACATATCACGCTTTTTTCCTAA

Transcript

rna-Spis8144_mrna

ATGCTTATAAAAGAACTCGCTCATGAAGTAAGAGGAAAGTACATGCATAAAGACGACGGGCGAAGAACTTTCTTCCTAGTAAATACAGTTCTGTTAGCCAGTCAGCAAGCAAAAGTGATCGCAAATCATACAGACCTGAGAGTCAAGTGTTATGTGGGAGAGATGGGTGTTGATGGCTGGGAAAAGTCGAGATGGGAAAGCGAGTTCAATGACAACAACGTTTTGGTCATGACAGCCCAGGTATTTCTTAACCTACTATCAGCTGGCTTCACAAAGCTTTCACAAGTGAATCTCCTGATCTTTGATGAATGCCATCATGCAAGGAAGAATCATCCATATGCGCAGATAATGGAGTTCTTCAATagatcaaaacaattaaaaccaACTGAAGTAACTCCATTACCCAAAATTATGGGTCTAACAGCCTCTGTGGTGAACGGGAAAGTAAAGCTACTCAGAATCGAATCAGAAATAAAACAGCTGGAATGCACCATGTGGTCCAAGTGTGACACAACTTGTGATGAGGATGTTGAAAACTTTGCCACTAAACCCAAAGAACAGGTCCTAAGCTACTCAAATGAAATTAGTGAGGACTTAAATAAGCTAATTCAACACCTATCACAGGTGTTAACGCAAGGAATGGATTTTCCTGGAGACTGTAAAGTGTCTAATGATGCACATGGTTTTACAAAGTGGGCACTTGAGGAATGTACCAGGACATTGCATGAACTGGGCCCTTGGGCTGCCTATATAGTTGCAGCATATCTAATCAATGAGTTAGAATCTGATCCAGAGAAGAGGCTCTGCGCCATTGTGTTTGTCGAAAAGCGATACACAGCACTCATCCTCAGTGAACAAATTAACCAGGCTGCCAAACTGAACCATGACCTATCAtttgtcaaaagtaattttgtGACTGGTCATGGCACAGGTGGAAAGGTTAACTTCTCGAGTGAGACTGAGATGAACTTCAAGAAACAGGAAGAAGTGCTTCGGAAGTTTAGAAGACATGAGTTCAACGTACTGATTGCCACTTCTGTTGTTGAGGAGGGCTTAGATGTTCCAAAGTGTAATGTTGTATGTTGCTTTGACTTCCCAAAGAACTTCAGATCTTATGTTCAGTCAAAAGGGAGAGCTCGTGCCAGAGATTCAAATTATTACATGCTTGTACCCCAAGAACTGAAAGGGGAGAAAGAAAATGACTTAGAGATTCTGCGTGAAATTGAGAAGATCTTGTTTAAAAGATGCCATGACCGCACACAGCCATCTATGAGGGAGTGTATTGAATCATTAGACACAGATGCATTCCAGCCCTATGTACCAGAAGATGGAGGAGGTGCTTGTGTGACAATGAGTAACAGTATTTCCATACTTTCCAAGTATTGTTCAAAGCTTCCGGGAGACCGGTTTACTCAGCCTACACCTGTTTACAAGATTGAGGAAATTGGGAAAGATAGTTACAGTGTATCTTCTGGACTTCAACAGGGTGAACCAATGCGGAGTAAGAAGTATGCCAAGATGGCTGCTGCTTACGAAGCTTGTATAGTGCTTCACAGAAATGGCGAGCTCGATGATAACTTGCGGCCAAAACGCTCATTGTCTGACGATGAAAGTGagttagaagaagaagaagaagcagcAGCAGCTGAGCCTGGCGGAAATGAATCTAAACCTGgatcaaagaagagaaaacgTCAGTACACGAGAAAGGTTCCTGAAGTATTCGTCGGTAGCCTGGTACAGGATGGTCAGTCCCAGTTCCTCACGACCATCACCATACAAGTCACAAAACTTATTCAACCACAAGAGTTTGTTATAAGTGAGCGACTGTTCCTCAACGACACTTGCACGTTTGGAATGCTGACAAATAAAAGAGTTCCTAGGATGCGATCGTTCAAACTGTATCCTAACTATGGCGAGGTCACAGTATCCTTGCAGTGTCACACATCTCCTTTGCGTAGGAACAACACCAAACAAGACCTGGACATTCTCCGTGAGTTTCATCTCTTTCTCTTCAGTCACGTTCTGCGCTCTCCTGTGGAATTCACACCAGAAAGTATGGATGGTTACTTCATTGTTATGGTAAAGGATTCTGGAAGGAGTGTTGACTTTGATCGCATGAGAGAGGAACTTTCGCGCGCACGCAAACAAAGCCGTGGAAATGAGCCTATCGTCGAAGACGCAGTAGTGACCAAAAACTACGTTCAATGTTCACAAAAGTACGCTGTTTTGAAGGTTCGTGGCGACCTGACCCCCCTGTCTCCCTTCCCGGAAAAGTCACAGGGAAACACTTATGAAGAATATTTTCGCCGTAAATACGGAGAAATGGGACGCATTGCTGACAAAAATCAACCTCTTGTTGAAGCGAAAGAGTTATCCGGTAGAGTGAATTTCCTGGTGGACCGAAAAGTAGGAACAAAACACAAGCGCCAAGTGATTTATCTTGTTCCAGAATTGTGTAACCAGATTCCCATTCGCGCTTCTCTTCTTAGCGTGTCACAGATTCTGCCATCAGTTCTTCAGCGTGTAACCTCCCTCCTTCTCGTTGCCGATCTCAAGACCATGGTTGCCGGTGAAGGCGACACAACAGATGAATCAAGTCTCCCTCCTATTGGTGCTGAAGAGGGCTCTCACCGACCCAATCAAGCAGGAGAAGTTGAAGACGATGGTTTGGATCTTGAAGACAGTGATGATGCAGAGTCTGAATTCCCGGGGCTTTTCTCCGACATCAGATCGATGTTCCGTTACATTCCATCATCTGTAAACCACCCCAACTCCTCTCTCGTTCTTCAAGCAGTTACCACCACCCATAGCGGAGATGCGTTTAATTTGGAGAGGCTAGAGATGTTGGGAGACTCATTTCTGAAGCTGGCCGTGTCCCTTCATCTCTTCTGCACATACAGCGATAAAGACGAAGGTAAGCTGACCCGGCGTAAGACAAACCAGATTAGTAATTTAGCGTTGTACCGAGCAGCCACTAAGAAATCTTTGGGCGAGTATCTCCAGAGCACGCAGTTGGCTCGCGACGTTTGGTGTCCTACGGGATGTCAGTTTGGCGACGTACCACCGAATCGCACCAcagaagagagagaaaagagaaagaagagaaaacttacTGCTACAGAGCATGCGTCCCAGAAATGCATCACGCAAATGATAGGGGATAAGTCCATAGCAGACAGCATCGAAGCACTGATCGGAGCATATCTAATATCCGATGGTTATCTTGGTGCATTGCGATTCATGAAGTTTCTAGGGCTAAAAATTTTACCTGAGGTTGACCCCAACGACGGTATTGAATCGCTGGCAAAGAATAGCAAATCGGGTTGCTATGCCAGATTTTGGCCGGATCAGACAAATGTAACAGCAACGCAGGGTAAAGGAGACGTGGTTTTCCGCCTCACATCAGGTCTGGAAAACTTTGAGAGCAATTCAATCTTGtacaaatttcaacaaaagttgtATTTGGTAGAAGCGCTAACTCACGCGTCTTACCACGAAAACCGCGCGACGCCAAGTTATCAAAGACTCGAGTTCCTCGGTGATGCTCTGCTGGACTTTTTGGTCACGCAGCATTTGTACTTCCGTCACGTTAACTTGTCACCCGGAGATCTGACCGATATTCGACAGGCGTTGGTCCCCGCTGACCCATTTATTATCGtgtctgaagaagaagaagaagaagaagaaggaatcGAGGCACCTAAAGTTCTTGGTGACATCTTTGAATCCGTTGCAGGGGCGATATTTTTGGACAGCGGTATGGATTTGACTAAAATCTGGGGTGTGTACTACCGCATGATGGAACCCTGCATCGGGATATTGATATGGGCAGCTACGAGAGAACATATCACGCTTTTTTCCTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF20931 all species →	Dicer_platform	Dicer, platform domain	Domain	Interproscan
PF14622 all species →	Ribonucleas_3_3	Ribonuclease-III-like	Family	Interproscan
PF03368 all species →	Dicer_dimer	Dicer dimerisation domain	Domain	Interproscan
PF20930 all species →	Dicer_PBD	Dicer, partner-binding domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF02170 all species →	PAZ	PAZ domain	Domain	Interproscan
PF00636 all species →	Ribonuclease_3	Ribonuclease III domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003100 all species →	Domain	PAZ domain	Interproscan
IPR000999 all species →	Domain	Ribonuclease III domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR048512 all species →	Domain	Dicer, platform domain	Interproscan
IPR005034 all species →	Domain	Dicer dimerisation domain	Interproscan
IPR036389 all species →	Homologous_superfamily	Ribonuclease III, endonuclease domain superfamily	Interproscan
IPR038248 all species →	Homologous_superfamily	Dicer dimerisation domain superfamily	Interproscan
IPR048513 all species →	Domain	Dicer, partner-binding domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR036085 all species →	Homologous_superfamily	PAZ domain superfamily	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14950 all species →	DICER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004525 all species →	Molecular Function	ribonuclease III activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0016891 all species →	Molecular Function	RNA endonuclease activity, producing 5'-phosphomonoesters	Interproscan
GO:0004530 all species →	Molecular Function	deoxyribonuclease I activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006309 all species →	Biological Process	apoptotic DNA fragmentation	Interproscan
GO:0016442 all species →	Cellular Component	RISC complex	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0031054 all species →	Biological Process	pre-miRNA processing	Interproscan
GO:0090501 all species →	Biological Process	obsolete RNA phosphodiester bond hydrolysis	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX27173.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.