Gene detail

Detailed information of PFX27199.1 in Stylophora pistillata

Genomic Location: Spis.scaffold109:111928...119897
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Aspg

ATGGCGTCCTCAGACGAAGAATCTTACTGCAAACTGCCTCTCGGATTCACTGGTGAAATCGTGGCAATGGTTTTGTACACTTCGCTTATCATCATCGGATCTTCAGGAAACATGTTCGTGATTCTTGCCATTAACCGGACTCCAGCTTTAAAGAACGTGTGCGGAATCTTGATAGCAAATGTGGCAGTAGCTGATCTGATGGTTACATCAGTAGTGATGCCTTTAGTTGTGTATGTCCATATTCAGGGGTTTTTGGATAGGTGCACTTTCCTTACCCCGGTTTTCGTTGCCTGGATAATAGCACTTTTCTCCGCTGGTTCCTCGCTACTGACGCTAACTGCCCTCAGTATGGATCGGTGCTTTGCTATCTGTCGTCCGATGAGACATAAAACGATTGTGACTAAAACAAAGGCAAAGATAGTCACGGCAATAATATGGATGGCATCTTTGACCCTTCCTCTTTTAGAAATCTTCTACCATGGATCGGCTCTCGCAAAGTATCTTCAGACCGTTGGTGTGGTGTGCTGTTATTCCATCATAGTCGTGGGCGGTATTTTTACGGTCAGGCATGTGCGTGCAAAGTCACGACAAATAGTATCACTACACCAGGATCAAGGAACTTCTCACCTCACTGCAGCTTTGAACCAGAGGAACAAACAAGTCGCAAAGACAATTGCACTTGTTGTGTTTTTCTTCACTCTCTGTTGGATCCCAATAGCGTATCTTACAGAGAGTGAGAGTTTCCTTAAGGTGACTTTGTTCTTCCATGGAAAACTGTATCGTGGCAATCGAGCCTTGAAGGTTGATGCACGCAGATTTGGTGCCTTTGACACTCCAAACTGTCCTCCTTTGGCAACAGTAGAAGCTGGTATTGAAATTGAGTGGGAGGAGCTCTTTTATGAAAATCAAGCAAGTAAATTTCAAATCCACACAAAGATGAGTTCAAGAATAGGAGTGCTGAGAATTTTCCCTGGAATTACGCAAGAAGCAGTTTTGGTGGAAGCTGGTGTAATCTCAGGAAATGATATGACGGTTGAGGCAGCGCTAACCAAACTCTCCTATGTACTTGGACATGATGAGCTCTCGCTGGAAGAGAAAAAAGAGATGATGAAAAAGAATCTACGTGGAGAGTTGACACTGTACAAAAACGAAAAGATGGAACAGTTTTCTTTCCGGGACAATGAACTGATCGATGCAGTAGCTTCACATTTCAAAGTTGGTTCAACCGAGGAAGTGAGGTTCATCAAGCAAGCGTTATTTGCGGTGTTGATGTGTCACGCTGCGGGAAGGGGCGACATTGATGCTATGGAAGAGCTGCGTCAGCAGGAAGTGAGGTTCATCAAGCAAGCGTTATTTCCGGTGTTGATGTGTCACGCTGCGGGAAGGGGCGACATTGATGCTATGGAAGAGCTGCGTCAGCAGGGTGGTTTATTAAGCGTTGCCACCAGTCACGACGGTCGCACCCCAATTCATGTAGCATGTCTGGAGGGTCAGCTGCAAGTCATTCGGTACCTTCTGGAGAAAGGCGCCTCACCGCACGTTTTCGATCATCACGGACAAACCCCTTTGCACGATGCTATTCGTAGTGCTAATGAGGAGGCCATTTTACTTCTCAGGGAGTTTGGGGCTCATTTAGGGCCCACCACAGTGAATACGGCCCTTCAAATATGCTCCCTTGCCGCTGATGACAAGGTGGATAGATTGCGGGCCTGGCACTTAGCCGGGGTTGATTTTAATGTTGGTGACTACGACAGGAGAACGGCTTTGCATGTGGCTGTTTGTCGAAATAATGTGAACACAGTTAAGTTTCTGTTGGAGTGCGGTGTTGATATGAACTTGCGCGACCTGTACGGCTTTACACCACTGAAAAACGCCGAGCTTTTTGAAAACAGAGGAATGATGGAACTACTCCAGTCGGCGGCACAAAAGACGACTGAAGAAGCTGACAAGTCAAGAGGAGCGACAAAGCTCGTGAGGTTCACCAGTTTTCATTCCGTGTCATAA

Transcript

rna-Spis8106_mrna

ATGGCGTCCTCAGACGAAGAATCTTACTGCAAACTGCCTCTCGGATTCACTGGTGAAATCGTGGCAATGGTTTTGTACACTTCGCTTATCATCATCGGATCTTCAGGAAACATGTTCGTGATTCTTGCCATTAACCGGACTCCAGCTTTAAAGAACGTGTGCGGAATCTTGATAGCAAATGTGGCAGTAGCTGATCTGATGGTTACATCAGTAGTGATGCCTTTAGTTGTGTATGTCCATATTCAGGGGTTTTTGGATAGGTGCACTTTCCTTACCCCGGTTTTCGTTGCCTGGATAATAGCACTTTTCTCCGCTGGTTCCTCGCTACTGACGCTAACTGCCCTCAGTATGGATCGGTGCTTTGCTATCTGTCGTCCGATGAGACATAAAACGATTGTGACTAAAACAAAGGCAAAGATAGTCACGGCAATAATATGGATGGCATCTTTGACCCTTCCTCTTTTAGAAATCTTCTACCATGGATCGGCTCTCGCAAAGTATCTTCAGACCGTTGGTGTGGTGTGCTGTTATTCCATCATAGTCGTGGGCGGTATTTTTACGGTCAGGCATGTGCGTGCAAAGTCACGACAAATAGTATCACTACACCAGGATCAAGGAACTTCTCACCTCACTGCAGCTTTGAACCAGAGGAACAAACAAGTCGCAAAGACAATTGCACTTGTTGTGTTTTTCTTCACTCTCTGTTGGATCCCAATAGCGTATCTTACAGAGAGTGAGAGTTTCCTTAAGGTGACTTTGTTCTTCCATGGAAAACTGTATCGTGGCAATCGAGCCTTGAAGGTTGATGCACGCAGATTTGGTGCCTTTGACACTCCAAACTGTCCTCCTTTGGCAACAGTAGAAGCTGGTATTGAAAttgagTGGGAGGAGCTCTTTTATGAAAATCAAGCAAGTAAATTTCAAATCCACACAAAGATGAGTTCAAGAATAGGAGTGCTGAGAATTTTCCCTGGAATTACGCAAGAAGCAGTTTTGGTGGAAGCTGGTGTAATCTCAGGAAATGATATGACGGTTGAGGCAGCGCTAACCAAACTCTCCTATGTACTTGGACATGATGAGCTCTCGctggaagagaaaaaagagatgatgaaaaagaatCTACGTGGAGAGTTGACACTGTACAAAAACGAAAAGATGGAACAGTTTTCTTTCCGGGACAATGAACTGATCGATGCAGTAGCTTCACATTTCAAAGTTGGTTCAACCGAGGAAGTGAGGTTCATCAAGCAAGCGTTATTTGCGGTGTTGATGTGTCACGCTGCGGGAAGGGGCGACATTGATGCTATGGAAGAGCTGCGTCAGCAGGAAGTGAGGTTCATCAAGCAAGCGTTATTTCCGGTGTTGATGTGTCACGCTGCGGGAAGGGGCGACATTGATGCTATGGAAGAGCTGCGTCAGCAGGGTGGTTTATTAAGCGTTGCCACCAGTCACGACGGTCGCACCCCAATTCATGTAGCATGTCTGGAGGGTCAGCTGCAAGTCATTCGGTACCTTCTGGAGAAAGGCGCCTCACCGCACGTTTTCGATCATCACGGACAAACCCCTTTGCACGATGCTATTCGTAGTGCTAATGAGGAGGCCATTTTACTTCTCAGGGAGTTTGGGGCTCATTTAGGGCCCACCACAGTGAATACGGCCCTTCAAATATGCTCCCTTGCCGCTGATGACAAGGTGGATAGATTGCGGGCCTGGCACTTAGCCGGGGTTGATTTTAATGTTGGTGACTACGACAGGAGAACGGCTTTGCATGTGGCTGTTTGTCGAAATAATGTGAACACAGTTAAGTTTCTGTTGGAGTGCGGTGTTGATATGAACTTGCGCGACCTGTACGGCTTTACACCACTGAAAAACGCCGAGCTTTTTGAAAACAGAGGAATGATGGAACTACTCCAGTCGGCGGCACAAAAGACGACTGAAGAAGCTGACAAGTCAAGAGGAGCGACAAAGCTCGTGAGGTTCACCAGTTTTCATTCCGTGTCATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00710 all species →	Asparaginase	Asparaginase, N-terminal	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006034 all species →	Family	Asparaginase/glutaminase-like	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR027474 all species →	Domain	L-asparaginase, N-terminal	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036152 all species →	Homologous_superfamily	Asparaginase/glutaminase-like superfamily	Interproscan
IPR027473 all species →	Homologous_superfamily	L-asparaginase, C-terminal	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11707 all species →	L-ASPARAGINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004067 all species →	Molecular Function	asparaginase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX27199.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.