Gene detail

Detailed information of PFX27215.1 in Stylophora pistillata

Genomic Location: Spis.scaffold108:277494...304082
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ST13

ATGCATAATCTGAAACCTGAACTAAACGAAGCTGTAAGTTCACAAGAGGCAGAAATGGCCTCAAAATTTGATGAAACCCAGATTAGCTTGGTCAAGCAATTTGTTGGATTGTGTAAAGCGAAGCCTGAATATTTACATGCTCCACAGCTGAAGTTCTTCAAAGATTGGCTGGAGAGCATTGGAGGTCAGGTTCCTCCACTACCAGAAAAACCTAAAGAACCAGAGCCACCTCCAAAACTGACTGAGGAGCCTTCAAAGCCAACCAAGGAACCTCCAAAATCAGCAGAGGAGCCTCCAAAACCAGCAGAGGAGCCTCCAAAACTGACTGAGGAGCCTTCAAAGCCAACCAAGGAACCTCCAAAAACAGCAGAGGAGCCTCCAAAAACAGCAGAGGAGCCTCCAAAAACAGCAGAGGAGCCTCCAAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAATGGAGGAATTGTGGGTTGAGGCTGCAGCAGAAGAACCTGTGGACAGTGAGAGTGAGGAAAGTGATGTTGAAATTGACAAAGAAGGATGCATTGAGCCAGATAACGATGAACCTCAACAAATGGGAGATTCAAGCATTGAGGTTACAGACGAAATGAGGGATGAATCCTCCTCAAAGAGAATGGAAGCTATGACGGCAATGAATGAAGGAAACTTTGAGGAGGCACTCAAGCTGTTTACTGAAGCTGTTCTTAAGAATCCATCTGCAAGCATGTATGCTAAACGAGCAAGTTGTTTTATTCGGATGAAAAAACCAAATGCAGCCATTAGGGACTGTGATGAGGCTATCAAGATCAATCCCGACTCTGCCCAACCATACAAATGGAGAGGACGAGCACACAGACTCCTGGGTCATTGGGCAGAGGCTGCTAAGGATCTTGCTGTGGCATGTAAACTGGACTTTGATGAACAGGCTGATGAGTGGCTGAGGGAAGTAAAACCTAAGGCACAACTTCTACTAGAACATCAGAGAAAATATGAACGGAAACGTCTAGAGAAAGGAGAGAAGAAGAAAATGGACAAAATCAAAAAGGCAAAAGAAGCTCAAGAAAAAGCCAGGAAGGAGGAAGAAGAAAGGACAAAAAGGACACGAGGGTCCACAACATATCGAAGTGGCTTTGAAGTTCCTGACCCAGGGGTCTACCCTGAGGAAGATGCGTTCCCTCATCCCGGAGGTCCGGGAGGACCAGCCACTGGAGGGGCCGATACACCAAACTTGAACGCGCTACTGAGTGATCCAGAGTTGTTGGAAGCTTTTCAGGATCCTGAAGTGATGGCCGCCTTCCAAGACGTGAGCCAAAACCCAGCAAACCTCTCAAAATACCAACATCTTCCCAAAGTCCAGATGATCGTCGACAAACTCGCCGAGAAGTTTGGTCCCGCGGGATCTGAACCGCCACCTGATCCTAGCGAGTTTTCCGGGGGTGGATTTCCCGGTGGGGGTTTTGGAGGTGGATTTGGAGGCGGGTTTCCTGGCGGGGGCTTTGGAGGTGGCTTTCCCGGCGGGATGTCATTTGGGAACATGTTTGGCGGCGGGAGGACGAAAATGCTTCCATCGTTTGAAAAGAGACCGTATTTATTTTCAAAGCGAGATACAAATCCAAACTGGCGGGAACTAAGCGCGGTTAAGAACGTTTCCAACGCGACAGAAGTTGACAGTGCAGTAACCGATCGTGAACGCGCTAAAAACACTAAATCGCGATTACATTCTCGATCGAGTCATAGACACGATAGTCTTCCTACGATCAAAGAACCATCAGCCCCGGAGGTAACACGAACTACGACACCAAGCACAGTCGCGGTAAGCGATGAAGGCGGTCTGTGGCTTGGACCGAAAAACGAAAACGTTCGCTTGTGCATCAAGCGTTGGAAGAAAATGGGCCTGAGCAGATCGAATGCGTCCAGCTTTCATTTCGAGCCCCTGCTGAGCTTCAGAAAGTTAGTACGGATGGTTCTGATTGTAATTAGACTTGGAAGTGCTCTTAAAAGTGACCCCAAAGCCATTTTCCGCGAGGACGGAATTTCTAAGTCGTTACTGGAGATTATGGAAGGTTACATGACTACAAGAGAAAAACACTTAAAGGGTGACAATAAACAGGACATTCCTGGCTTCGCTACTTCTGCTCTTGTCTTTGACCCAAAACAATTCAAGGCCAATAAAGAGGTAAAGATTAGCAAGGAAGTCAAACAGCTATTAACCACTAGGCCAGATATGCGCACAAGCGACCAACTTCAAACCGTGTTGTACGCTCTTCAAACCTTGGAATCGTTCTCTGAGCTCCCTCTCCATATGCAACAAGACGTGTGTAAAGTTGCCTGGTTGCAGAGCCTACCTCCGAATAAAGTTATAATAAAACAAGATCACTTGGCCGAGAACTTTTATTTTATCATTAATGGAACGGTAACAGTGCTATCCGAAAATGATCCAACAAAGGATTCGCCATTTACGTCTCTGGCAACCCTGAAGAGAGGATCCAGTTTTGGAGAGACTGCCATTATGAACAACGTCCGCAGGACAGCATCTGTGGTCAGCAACGATCCTGTTCAGCTATTAGTAATAGAAAAGGAGGATTATAAGAGAATATTTATGGGTCAGACTAAATCAGGAGAGGAGCCTGCCCATCTCAAATTTTGCAGAAATCTAGACTTTCTAGCTGACTGGCCGGTTGATCTACTACTTGCACACCCGGAAAACTGCCTTTTTCATTACTTCAGAAGAGGAACAGTGATTGTAAAAGACAGTAACAAATCCGACTGGTTGTACGTCATTGTCTCGGGAGTATACCAGGTTCTTCTGAGACTTGAAATATCTAAACCAAAGTTGTGCGGAAAAAAGCACTATCGATACAGCGAAGATGTAACCGCAGCAGAAAAATTGGCGCATTTAACAGACGAACGTCACAGGAAAACCAATTACTCCGCTTCCAGATTAAAACGGATGCCAAGGAACATGAACAAATTAGCTTACTCAAGATACCACGTGGAAGAACGTCGCACAAAATCCCTTCCGCCTGTGTTCCCCGTCACTGAAGTTCTGTCCACCAATCACAATCAACTGAGAAAACAAACAGCTTTTGTGCAGTTGGGTCTCCTTCATCCCAGGAGTGTATTTGGTTTGTCAACGCTTCCTAATTTTGATGAAGATTTCCAACTTCTTCAGCAAGCCAGTGTCAGCCTTGTCAGTCGAGGAGCTGAATGCGTTATGATTTCTAAGAAATTCTTCATAAGCCAAGCAAGCGAGCTAACCAAAAAATGGATAAGACATAATGTGCGGTCTTACCCTTCAAGAGAGACGCTGCAAAGAAATCTCCAAGAAAGAATCAACTGGGATGCTTAA

Transcript

rna-Spis8074_mrna

ATGCATAATCTGAAACCTGAACTAAACGAAGCTGTAAGTTCACAAGAGGCAGAAATGGCCTCAAAATTTGATGAAACCCAGATTAGCTTGGTCAAGCAATTTGTTGGATTGTGTAAAGCGAAGCCTGAATATTTACATGCTCCACAGCTGAAGTTCTTCAAAGATTGGCTGGAGAGCATTGGAGGTCAGGTTCCTCCACTACCAGAAAAACCTAAAGAACCAGAGCCACCTCCAAAACTGACTGAGGAGCCTTCAAAGCCAACCAAGGAACCTCCAAAATCAGCAGAGGAGCCTCCAAAACCAGCAGAGGAGCCTCCAAAACTGACTGAGGAGCCTTCAAAGCCAACCAAGGAACCTCCAAAAACAGCAGAGGAGCCTCCAAAAACAGCAGAGGAGCCTCCAAAAACAGCAGAGGAGCCTCCAAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgaatggaggaattgtgggttGAGGCTGCAGCAGAAGAACCTGTGGACAGTGAGAGTGAGGAAAGTGATGTTGAAATTGACAAAGAAGGATGCATTGAGCCAGATAACGATGAACCTCAACAAATGGGAGATTCAAGCATTgagGTTACAGACGAAATGAGGGATGAATCCTCCTCAAAGAGAATGGAAGCTATGACGGCAATGAATGAAGgaaACTTTGAGGAGGCACTCAAGCTGTTTACTGAAGCTGTTCTTAAGAATCCATCTGCAAGCATGTATGCTAAACGAGCAAGTTGTTTTATTCGGATGAAAAAACCAAATGCAGCCATTAGGGACTGTGATGAGGCTATCAAGATCAATCCCGACTCTGCCCAACCATACAAATGGAGAGGACGAGCACACAGaCTCCTGGGTCATTGGGCAGAGGCTGCTAAGGATCTTGCTGTGGCATGTAAACTGGACTTTGATGAACAGGCTGATGAGTGGCTGAGGGAAGTAAAACCTAAGGCACAACTTCTACTAGAACATCAGAGAAAATATGAACGGAAACGTCTAGAGAAAggagagaagaagaaaatggacAAAATcaaaaaggcaaaagaagCTCAAGAAAAAGCCAGGAAGgaggaagaagaaaggaCAAAAAGGACACGAGGGTCCACAACATATCGAAGTGGCTTTGAAGTTCCTGACCCAGGGGTCTACCCTGAGGAAGATGCGTTCCCTCATCCCGGAGGTCCGGGAGGACCAGCCACTGGAGGGGCCGATACACCAAACTTGAACGCGCTACTGAGTGATCCAGAGTTGTTGGAAGCTTTTCAGgaTCCTGAAGTGATGGCCGCCTTCCAAGACGTGAGCCAAAACCCAGCAAACCTCTCAAAATACCAACATCTTCCCAAAGTCCAGATGATCGTCGACAAACTCGCCGAGAAGTTTGGTCCCGCGGGATCTGAACCGCCACCTGATCCTAGCGAGTTTTCCGGGGGTGGATTTCCCGGTGGGGGTTTTGGAGGTGGATTTGGAGGCGGGTTTCCTGGCGGGGGCTTTGGAGGTGGCTTTCCCGGCGGGATGTCATTTGGGAACATGTTTGGCGGCGGGAGgacGAAAATGCTTCCATCGTTTGAAAAGAGACCgtatttattttcaaagcgaGATACAAATCCAAACTGGCGGGAACTAAGCGCGGTTAAGAACGTTTCCAACGCGACAGAAGTTGACAGTGCAGTAACCGATCGTGAACGCGCTAAAAACACTAAATCGCGATTACATTCTCGATCGAGTCATAGACACGATAGTCTTCCTACGATCAAAGAACCATCAGCCCCGGAGGTAACACGAACTACGACACCAAGCACAGTCGCGGTAAGCGATGAAGGCGGTCTGTGGCTTGGACCGAAAAACGAAAACGTTCGCTTGTGCATCAAGCGTTGGAAGAAAATGGGCCTGAGCAGATCGAATGCGTCCAGCTTTCATTTCGAGCCCCTGCTGAGCTTCAGAAAGTTAGTACGGATGGTTCTGATTGTAATTAGACTTGGAAGTGCTCTTAAAAGTGACCCCAAAGCCATTTTCCGCGAGGACGGAATTTCTAAGTCGTTACTGGAGATTATGGAAGGTTACATGACTACAAGAGAAAAACACTTAAAGGGTGACAATAAACAGGACATTCCTGGCTTCGCTACTTCTGCTCTTGTCTTTGACCCAAAACAATTCAAGGCCAATAAAGAGGTAAAGATTAGCAAGGAAGTCAAACAGCTATTAACCACTAGGCCAGATATGCGCACAAGCGACCAACTTCAAACCGTGTTGTACGCTCTTCAAACCTTGGAATCGTTCTCTGAGCTCCCTCTCCATATGCAACAAGACGTGTGTAAAGTTGCCTGGTTGCAGAGCCTACCTCCGAATAAAGTTATAATAAAACAAGATCACTTGGCCgagaacttttattttatcattaatgGAACGGTAACAGTGCTATCCGAAAATGATCCAACAAAGGATTCGCCATTTACGTCTCTGGCAACCCTGAAGAGAGGATCCAGTTTTGGAGAGACTGCCATTATGAACAACGTCCGCAGGACAGCATCTGTGGTCAGCAACGATCCTGTTCAGCTATTAGTAATAGAAAAGGAGGATTATAAGAGAATATTTATGGGTCAGACTAAATCAGGAGAGGAGCCTGCCCATCTCAAATTTTGCAGAAATCTAGACTTTCTAGCTGACTGGCCGGTTGATCTACTACTTGCACACCCGGAAAACTGCCTTTTTCATTACTTCAGAAGAGGAACAGTGATTGTAAAAGACAGTAACAAATCCGACTGGTTGTACGTCATTGTCTCGggaGTATACCAGGTTCTTCTGAGACTTGAAATATCTAAACCAAAGTTGTGCGGAAAAAAGCACTATCGATACAGCGAAGATGTAACCGCAGCAGAAAAATTGGCGCATTTAACAGACGAACGTCACAGGAAAACCAATTACTCCGCTTCCAGATTAAAACGGATGCCAAGGAACATGAACAAATTAGCTTACTCAAGATACCACGTGGAAGAACGTCGCACAAAATCCCTTCCGCCTGTGTTCCCCGTCACTGAAGTTCTGTCCACCAATCACAATCAACTGagaaaacaaacagcttttgtgCAGTTGGGTCTCCTTCATCCCAGGAGTGTATTTGGTTTGTCAACGCTTCCTAATTTTGATGAAGATTTCCAACTTCTTCAGCAAGCCAGTGTCAGCCTTGTCAGTCGAGGAGCTGAATGCGTTATGATTTCTAAGAAATTCTTCATAAGCCAAGCAAGCGAGCTAACCAAAAAATGGATAAGACATAATGTGCGGTCTTACCCTTCAAGAGAGACGCTGCAAAGAAATCTCCAAGAAAGAATCAACTGGGATGCTTAA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001143 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18253 all species →	HipN	Hsp70-interacting protein N N-terminal domain	Domain	Interproscan
PF00027 all species →	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR034649 all species →	Domain	Hsp70-interacting protein, N-terminal	Interproscan
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR018488 all species →	Conserved_site	Cyclic nucleotide-binding, conserved site	Interproscan
IPR006636 all species →	Domain	Heat shock chaperonin-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45883 all species →	HSC70-INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030544 all species →	Molecular Function	Hsp70 protein binding	Interproscan
GO:0051085 all species →	Biological Process	chaperone cofactor-dependent protein refolding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX27215.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.