Gene detail

Detailed information of PFX27236.1 in Stylophora pistillata

Genomic Location: Spis.scaffold108:136875...161705
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Cyfip2

ATGGCGACTCTAGAGGACGCACTTTGTAATGTGCAACAACTTCAGGCAATTTCCCTTCCCGACGAACAGCCACAAGTGGAAGCACCTCCGGCTTCTGTCACTTACATTTCCAACTTTGATACGAACTTCGAGGACAGCAAAGCCTTCATCACATGTATCAGCAAGTATTTGGAAGAGGCGGATGTACACAAAGGCTTGAATGAAATGCTTGAAGAGGGTGCAAAGTATTCTGTGATGTTGTACACGTGGAGGAGTTGTTCAAGAGCTGTTCCTTCTGTTAAAAGTGATGACCAACCAAACAGAATTGAGATTTATGAGAAGACAGTTGAAGTTTTAGAACCTGAGATACGCAAACTTAAGGGCTTCATGCACTTTGCCCAAGATGCTGTCACTAGATTCTGCAAGGAAGTGAAGACTCTGAGTCACCCAGAGAGCAGAAAGGATTTTATATCAGAGAGGTATCTGTTGACACTTGGAAAATTTGTGAACATGTTTGCAGTCCTGGATGCATTGAAGAATATGAAGGCATGTCTAAACAATGACTATGCATTTTTTAAAAGAGCTGACACCTTCCTGCGTCGAGGAACTGGTGATGTATCAATGATTGAAGAATCACAGAATCTTTCTCTGTTTTTGGCTAACCAAAACAAGATCACACACTTACTTAAAGAAGGACTGGAGAACATTCAAGGATATGAAGATGTGTTAGCTGATGTGTTGAATTTGTGTGTCAGATTGTATGAAAGCCACATGTATATAACACCAAATGATAAATACATTCTTTTGAAGGTGATGGGGTTTCTGATTTTCCTGATGGATGGCAAGGAGAGTAGTGTGTTAAAGATGGATCAGAAGAAAAGGATCAGCATCAGCAAGATTGACAAAATCTTTAAGCAATTTCCAGTGGTACCACTGTTTGGAGATGTCCAAATTGCTCTAGTGACTTACCTGAAAATATGCCCACACTTTGATGGTATGCGAGACAAATGGACTTCAGCTGCAGAAGGTGCTGATGAAAAAGTTGTGGGACAATACAATCTCCTTGGAAATATGGAGAGCATCAGGGAGGAGCATGTGAAGTTTATCAAGGAGAAATGTGGACCAGCAAAATGTTTGAGGGATCTAAAGAATTGCAAAGGAGGGGGGGGGATGATCACCTCCAGTGCTAATCCTCGAAGTGATGGACAGTGTAAAGAACTGACAAATCTGGCTCTCAGAGGACTAAGGCTGCTGTCCTCATGGACCGCACAAGTGATGGAGCTGTACTCCTGGAAACTTCTACATCCCACAGACAGGTATGGCAATCCACAATGTCCTGAGAACGCTGAAGAATATGAAAGAGCTACAAGATACAACTACAATAGTGAAGAAAAGTTCTCACTTGTGGAGGTGATTGCCATGATCAAAGGTCTTTATGGTCAGATAGTGCGACTTGAACCAATGTTTTCAGAGGTGATCAAACGTAATGTACACACAGAAGTGCAGCAGTTTATTCAGGTTAACTTAAGAGAGCCACTCAGAAAAGCTGTCAAGAGTAAAAAGGCTACTCTTCTGAAAACAATTCTACTGTCCATTCGGGAGACCGGAGGAGACTGGGCCGATGGGCAACATGGAAGAGGGGACCCTATTCTGAAGGGAGAAAAGGACCCCAAAACAGGGCCCAACATTAAGATACCAGAAAGACTCGTAGGACCCTCCAGTACGCAGTTGTATATGGTCCGCACGATGCTGGAGTCCTTAGTTTCTGAGAAAGGAGGCAAAAAAGTCATGCGCAAAGAACTGGAGAAGGAATCAGTGGAGCAGATTGAAGAGTTCTTGAAGAAATCTTTCTTCTTTGAACAAATGCTTCGTTTTAATGAAGTTTTGAGGGATTGCTGTGACTTGTCTCAACTGTGGTTCAGGGAGTTTTATTTGGAGTTGACAATGGGTGCCAGAATCCAGTTTCCCATTGAGATGTCGATGCCATGGATCTTGACGAATCACATTTTGGAAAGCAAAAATCCCAGTATGATGGAGTATGTGTTGTACCCGCTGGACCTTTATAACGACAGTGCTCATTACGCCATGACTGTCTTCAAGAAACAGTATCTGTATGATGAAATTGAGGCAGAGGTGAACCTGTGTTTTGACCAGTTTGTGTACAAGCTTAGTGATCAGATATTTTCCTACTACAAGGCGCAGGCGTGCAGTATGTTACTGGACAAGAAGTTCAAATCGGAGCTTGTCCGTTTGAATGCCGAGGCTGCAGCGAAACTCGGAACACGATCCAACCGATACGAGACTCTTCTTAGACAGAGGCATGTGCAGCTTCTAGGTCGGTCAATCGACTTGAACAAGCTCATAACGCAGCGTCTTAACAACGCCATGATTAAGTCCTTGGATTGTGCGATAGCGCGGTTCGAGAGTGGAGATATCTGTGGTGTTGTGGACTTGGAGAACCTTATTGAAGTGAACCGAATGGCACATCAGTTGTTGTCCAAGTGCGTGAAGCTGATTCCGTTTAAGAACATGTTGGGTGAAGCCAACCATTCGGTGTCTGCGCCATATGGAAGGATCACCCTTCATGTGTTCTGGGAACTCAACTTCGATTTTCTTCCAAACTACTGCTATAACTCGTCCACGAACAGAAGTCGCCGAGAGTTTCTTGAATTAATCGCCATCCTTAATTTTGTTTACAGATTTGTTCCGACTTCGCTTTCCTTAGTGGAAAAGGTTTCCAGAGAACAAGCTCCAAAACAGGCACATCATTACTTCTTTGGCACAAAGCTTCAAAACTCAGTGTTCAATGCCATTGGGTCGCTGTACAGCAACTTTGTCGGAGACATTCATTTCGCTTGCATGTCACGCTTGCTTGGTTATCAAGGGATTGCTGTAGTGATCGAAGAACTTCTTAAGATTATCAAGAGTGTGCTCCAAGGTCAGCTTCAGCTGTACATAGCACAGCTCATCGAAGGCATGCCAAAGAAATGTGGTCTTCCTCGCTTTGAGTACGGATCAACAGGCGTCCTGGAATACTATCATGCTAGCCTTGAACCGATCATGCAGTACCCGTACTTGAGGACAGATGTGTTCCACGGATTCAGAGAGATCGGCAATGCCATCCTGTTCTGTTTACAACTAGAGGGCTTCCTTTCTCAAGAAGAGATTATTGATCTGTTGCATGCAGCTCCATTCCAAGGAATTATCCCCAGGCCTTATTTGAAAGATGGTGAAAAACTCCAGGCCAAAATGGAAAAGCTCGAGAAACAGTACAACTCGTTGCAAATTTTGTCAACCATTACCAAGCTTGGAACCAAAGAGCAAATAGCCAACGCTAAAGAAGGCGACGTGTTGACGAAAGAAAGACTTTGCTGCGGACTGTCCATATTTGAGGTGGTATTGAAAAAGATCAAAAAGTTCCTGGTTCACGAAATATGGCAAGAGATGCCGCCTTCCAATGGAGTGATGAACATTGACGAGTGCAGAGAGTTTCACCGTCTGTGGAGCGCCATTCAGTTCAACTACTGCCAGCCACTGCGGCAAAATGAACTCACTGTAGAGCAGTGCTTTGGCGAAGGACTCAACTGGGCGGGATGTACCCTTATTGCTCTGTTAGGACAAGAGAATCGTTTTGAAGCGTTGGATTTCTGTTATCATATCGTCAAAGTCTACGAGGTGGATTCGCGGGACGAAGTGATCGGTGGCGTGGATCTCAAGCGGCTCGTTAGCCGAGCGCGTCACTTCAAAGCACTAAACGATCAGATATTCGCCGTGCTCAACAAGCACCTCAAGTCTTCAGACGGTCCAGTTGAACATGTCCGCTGCTTTCAGCCGCCCATTCATCAGGCCTTTGTCTCACCAATCTGA

Transcript

rna-Spis8066_mrna

ATGGCGACTCTAGAGGACGCACTTTGTAATGTGCAACAACTTCAGGCAATTTCCCTTCCCGACGAACAGCCACAAGTGGAAGCACCTCCGGCTTCTGTCACTTACATTTCCAACTTTGATACGAACTTCGAGGACAGCAAAGCCTTCATCACATGTATCAGCAAGTATTTGGAAGAGGCGGATGTACACAAAGGCTTGAATGAAATGCTTGAAGAGGGTGCAAAGTATTCTGTGATGTTGTACACGTGGAGGAGTTGTTCAAGAGCTGTTCCTTCTgttaaaagtgatgaccaACCAAACAGAATTGAGATTTATGAGAAGACAGTTGAAGTTTTAGAACCTGAGATACGCAAACTTAAGGGCTTCATGCACTTTGCCCAAGATGCTGTCACTAGATTCTGCAAGGAAGTGAAGACTCTGAGTCACCCAGAGAGCAGAAAGGATTTTATATCAGAGAGGTATCTGTTGACACTTGGAAAATTTGTGAACATGTTTGCAGTCCTGGATGCATTGAAGAATATGAAGGCATGTCTAAACAATGACTATGCATTTTTTAAAAGAGCTGACACCTTCCTGCGTCGAGGAACTGGTGATGTATCAATGATTGAAGAATCACAGaatctttctctgtttttggCTAACCAAAACAAGATCACACACTTACTTAAAGAAGGACTGGAGAACATTCAAGGATATGAAGATGTGTTAGCTGATGTGTTGAATTTGTGTGTCAGATTGTATGAAAGCCACATGTATATAACACCAAATGATAAATACATTCTTTTGAAGGTGATGGGGTTTCTGATTTTCCTGATGGATGGCAAGGAGAGTAGTGTGTTAAAGATGGATCAGAAGAAAAGGATCAGCATCAGCAAGATTGACAAAATCTTTAAGCAATTTCCAGTGGTACCACTGTTTGGAGATGTCCAAATTGCTCTAGTGACTTACCTGAAAATATGCCCACACTTTGATGGTATGCGAGACAAATGGACTTCAGCTGCAGAAGGTGCTGATGAAAAAGTTGTGGGACAATACAATCTCCTTGGAAATATGGAGAGCATCAGGGAGGAGCATGTGAAGTTTATCAAGGAGAAATGTGGACCAGCAAAATGTTTGAGGGATCTAAAGAATTgcaaaggagggggggggATGATCACCTCCAGTGCTAATCCTCGAAGTGATGGACAGTGTAAAGAACTGACAAATCTGGCTCTCAGAGGACTAAGGCTGCTGTCCTCATGGACCGCACAAGTGATGGAGCTGTACTCCTGGAAACTTCTACATCCCACAGACAGGTATGGCAATCCACAATGTCCTGAGAACGCTGAAGAATATGAAAGAGCTACAAGATACAACTACAATAGTGAAGAAAAGTTCTCACTTGTGGAGGTGATTGCCATGATCAAAGGTCTTTATGGTCAGATAGTGCGACTTGAACCAATGTTTTCAGAGGTGATCAAACGTAATGTACACACAGAAGTGCAGCAGTTTATTCAGGTTAACTTAAGAGAGCCACTCAGAAAAGCTGTCAAGAGTAAAAAGGCTACTCTTCTGAAAACAATTCTACTGTCCATTCGGGAGACCGGAGGAGACTGGGCCGATGGGCAACATGGAAGAGGGGACCCTATTCTGAAGGGAGAAAAGGACCCCAAAACAGGGCCCAACATTAAGATACCAGAAAGACTCGTAGGACCCTCCAGTACGCAGTTGTATATGGTCCGCACGATGCTGGAGTCCTTAGTTTCTGAGAAAGGAGGCAAAAAAGTCATGCGCAAAGAACTGGAGAAGGAATCAGTGGAGCAGATTGAAGAGTTCTTGAAGaaatctttcttctttgaaCAAATGCTTCGTTTTAATGAAGTTTTGAGGGATTGCTGTGACTTGTCTCAACTGTGGTTCAGGGAGTTTTATTTGGAGTTGACAATGGGTGCCAGAATCCAGTTTCCCATTGAGATGTCGATGCCATGGATCTTGACGAATCACATTTTGGAAAGCAAAAATCCCAGTATGATGGAGTATGTGTTGTACCCGCTGGACCTTTATAACGACAGTGCTCATTACGCCATGACTGTCTTCAAGAAACAGTATCTGTATGATGAAATTGAGGCAGAGGTGAACCTGTGTTTTGACCAGTTTGTGTACAAGCTTAGTGATCAGATATTTTCCTACTACAAGGCGCAGGCGTGCAGTATGTTACTGGACAAGAAGTTCAAATCGGAGCTTGTCCGTTTGAATGCCGAGGCTGCAGCGAAACTCGGAACACGATCCAACCGATACGAGACTCTTCTTAGACAGAGGCATGTGCAGCTTCTAGGTCGGTCAATCGACTTGAACAAGCTCATAACGCAGCGTCTTAACAACGCCATGATTAAGTCCTTGGATTGTGCGATAGCGCGGTTCGAGAGTGGAGATATCTGTGGTGTTGTGGACTTGGAGAACCTTATTGAAGTGAACCGAATGGCACATCAGTTGTTGTCCAAGTGCGTGAAGCTGATTCCGTTTAAGAACATGTTGGGTGAAGCCAACCATTCGGTGTCTGCGCCATATGGAAGGATCACCCTTCATGTGTTCTGGGAACTCAACTTCGATTTTCTTCCAAACTACTGCTATAACTCGTCCACGAACAGAAGTCGCCGAGAGTTTCTTGAATTAATCGCCATCCTTAATTTTGTTTACAGATTTGTTCCGACTTCGCTTTCCTTAGTGGAAAAGGTTTCCAGAGAACAAGCTCCAAAACAGGCACATCATTACTTCTTTGGCACAAAGCTTCAAAACTCAGTGTTCAATGCCATTGGGTCGCTGTACAGCAACTTTGTCGGAGACATTCATTTCGCTTGCATGTCACGCTTGCTTGGTTATCAAGGGATTGCTGTAGTGATCGAAGAACTTCTTAAGATTATCAAGAGTGTGCTCCAAGGTCAGCTTCAGCTGTACATAGCACAGCTCATCGAAGGCATGCCAAAGAAATGTGGTCTTCCTCGCTTTGAGTACGGATCAACAGGCGTCCTGGAATACTATCATGCTAGCCTTGAACCGATCATGCAGTACCCGTACTTGAGGACAGATGTGTTCCACGGATTCAGAGAGATCGGCAATGCCATCCTGTTCTGTTTACAACTAGAGGGCTTCCTTtctcAAGAAGAGATTATTGATCTGTTGCATGCAGCTCCATTCCAAGGAATTATCCCCAGGCCTTATTTGAAAGATGGTGAAAAACTCCAGGCCAAAATGGAAAAGCTCGAGAAACAGTACAACTCGTTGCAAATTTTGTCAACCATTACCAAGCTTGGAACCAAAGAGCAAATAGCCAACGCTAAAGAAGGCGACGTGTTGACGAAAGAAAGACTTTGCTGCGGACTGTCCATATTTGAGGTGGTATTGAAAAAGATCAAAAAGTTCCTGGTTCACGAAATATGGCAAGAGATGCCGCCTTCCAATGGAGTGATGAACATTGACGAGTGCAGAGAGTTTCACCGTCTGTGGAGCGCCATTCAGTTCAACTACTGCCAGCCACTGCGGCAAAATGAACTCACTGTAGAGCAGTGCTTTGGCGAAGGACTCAACTGGGCGGGATGTACCCTTATTGCTCTGTTAGGACAAGAGAATCGTTTTGAAGCGTTGGATTTCTGTTATCATATCGTCAAAGTCTACGAGGTGGATTCGCGGGACGAAGTGATCGGTGGCGTGGATCTCAAGCGGCTCGTTAGCCGAGCGCGTCACTTCAAAGCACTAAACGATCAGATATTCGCCGTGCTCAACAAGCACCTCAAGTCTTCAGACGGTCCAGTTGAACATGTCCGCTGCTTTCAGCCGCCCATTCATCAGGCCTTTGTCTCACCAATCTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05994 all species →	FragX_IP	Cytoplasmic Fragile-X interacting family	Family	Interproscan
PF07159 all species →	CYRIA-B_Rac1-bd	CYRIA/CYRIB Rac1 binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008081 all species →	Family	Cytoplasmic FMR1-interacting	Interproscan
IPR009828 all species →	Domain	CYRIA/CYRIB, Rac1 binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12195 all species →	CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000340 all species →	Molecular Function	RNA 7-methylguanosine cap binding	Interproscan
GO:0000902 all species →	Biological Process	cell morphogenesis	Interproscan
GO:0006417 all species →	Biological Process	regulation of translation	Interproscan
GO:0030833 all species →	Biological Process	regulation of actin filament polymerization	Interproscan
GO:0031209 all species →	Cellular Component	SCAR complex	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05749	CYFIP; cytoplasmic FMR1 interacting protein	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.