Gene detail

Detailed information of PFX27297.1 in Stylophora pistillata

Genomic Location: Spis.scaffold106:512894...520168
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis8003_mrna

ATGTCTTTAacaaaactcaaagaaaaaatgacaaaattaaaagatgaTACGGAAAAAGCGGAGGCGAGAGAGGCTGACGCAAAATTTCTGTTGAAAGATAAAATGGAAAAGATGGAAAGAGACGTGAACGAGGCAGAAGGATTAAAGCGAAGGATCAAGCTGCTAAAGTATGATCTTGAGAAGACAAATGATCGCTTGGAAGAGGCAGGTGGAAGACTAGGCGAGATCACCCAGAAAGGTGAAAACGAAGAGATGGTTCGCAAAGAACTGGAGGAATTTGAAGAAGAGGGGGACGAGAGAATTAGCATGTTGGAAGAAAGCGTCACTGAAGCCGCTAAGCTAAGGGAAGAAAAGGTCCACCTACTCAACGAAGCCGAGCGCAAGTTGGTTGTAATCCAAAGCGATCTGCAGGCTgcgaaagacaaagaaaaaaagtctttgGATAAATGCGAAAAATTGAAGTGTACGCTGCAAAATTACACTGAACAAGCAAAGGCACTAGAGGAATTAGACGAAGAGGCGAGCGAGAAGGAGCTGCTGAGCGAAGAAAAGATGGAGTTTCTGAAGGAACAACTTAAAGAGGCCAATGTTAGAGCAGAATCAGCCGAGAGGGAGGTTACCAAACTTGAGCGGCTAAAGGAGGAAACATCTTCTGATATCAGTGTTCAGTTGACGCAAGTTGAAGGAGAAATTGCAATCTCTAGCAGAGGCCTTAGGAATAAATATAAGATGTTTACAGCGAGGTTAGCAGGTCGATGCTCTTCAGCTTATTACCGCAGCTTATCGACCTTTTCTCTCCAGCAATCGTCGAAAAGCGTAAGTCGATTTCCAGGCAAGAGATGCAACAGATATTTTCAAAACGAAACTAAGGCCTGGAGATCGTGGGAAGGAACAACTAAGGCACCTGGTGTAACTGCTGAAACAACTGGCCGTGCAGTTGTTGGTGGGTTTGCCCTGTTTGGTGTGGGAGCCCTGTGTTATTATGGCTTGGGATTGTCCAATGAGATGGGTGCAATTGATCGTGCTATGGTATGGCCACAGGTGGTACGTGATCGTGTGAGGTCAACTTACTCTTATTTTGCTGGTAGTCTGGCTGTGACAGCAGTGTCAGCATACGCTATAAGTCAAAGCAGAGCTGTATTCACCTTGATGAGGGCAAGTCCATGGCTGGTTGTGGGTGGAGGAATGATTGCTACAATAGGAAGTTCTATCTTGTGTATGAGTTTGCCATATGAAGCACGGCTGAATGCAAAGCACATTGCCTGGGTTGGTCACAGTGCACTTATTGGGACCCTTATTGCTCCTCTCATGTTACTTGGAGGTCCATTAGTGCTAAGGGCTGCTGCTGTGACAGGTGGTGTAGTTGGGGCCTTGTCTCTGACAGCTGCCTGTGCTCCTGATGGGAAATTTCTGTCATGGGGTGGACCTTTGGCCATTGGCCTTGGTGGTGTGTGTATGGCGTGCCTTGGTACATTGTTCCTCCCAGCCAGCTCTGTGGTTGCCGCTGGTCTTCAGTCTGTAGTTACCTATGGTGGGCTTGTCATCTTTGGAGGGTTCATGTTGTATGACACTCAGAAGATCATCAGAAATGCAGAGACATATCCCTTGCATGCTGCCATACCATATGACCCCATCAATGCGTCTATTGGGATATACATGGACACCATCAACATTTTTATTAGAATTTTGACCATAATGGCTTCCTCAAACTCACGCCGAAAGTGAGTTAGACTGTAGGTGTACCAGGAGCACCAAAAGAAGTGTTCAGTACCAGCTATGGGACAATATTAACCTCAAGATGGCATTCCATAATTTTTAAGGAATGTTGCCACTCATTGTTTTTGCATTGAATTCACTGAATTCTGTTTTCTGAAGCAACATGTTTGTTGGAAGTGCAACAGTATTTACAATAGATGCTTTATTATGTCAGAGTTAAACTGAGTAACACCATGTAACCAACACAAACACCTAAGAGAAGTGGAGTGTTGTTTTTGGTATCACCAAATTTCCTAGAGAGGCTACtgcttttgttcattttatcaCTGCATTCACCTTTTGAAGCAAATGTCAGTTGAAAGTGTATGCTATTGTTATAGTTAAGAAAAGTTACATTTGATGTCTCCCAAGGTataaacaatttattgttaAGGAAAGACACTGGGGTCAAATCATGCTTCAGGCTTTTGCCGTGCTTACCTTTTTTGGCTGaaatacattttcctttttaaaattgtgTATTTAATGCTACTGGATTACACTCTGATGTTTACTTATTAGATTTCCAtgtaaataaagaattaaaataaattttagtttGCTCTTCTCTTTTTCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01027 all species →	Bax1-I	Inhibitor of apoptosis-promoting Bax1	Family	Interproscan
PF00261 all species →	Tropomyosin	Tropomyosin	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006214 all species →	Family	Bax inhibitor 1-related	Interproscan
IPR000533 all species →	Family	Tropomyosin	Interproscan
IPR035871 all species →	Domain	Growth hormone-inducible transmembrane protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23291 all species →	BAX INHIBITOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031305 all species →	Cellular Component	obsolete integral component of mitochondrial inner membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21890	GHITM, DERP2, TMBIM5; growth hormone-inducible transmembrane protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.