Gene detail

Detailed information of PFX27321.1 in Stylophora pistillata

Genomic Location: Spis.scaffold106:149943...167271
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

TOP1

ATGAACGGGGAAGCCATTCAACACGCCACTCTGTTACAAAAGCCGATGAGAGAAGAAGTGGCATCTGGAGATGATGACCTAGCTCTGGCACAGGCGAAACAAAAGCCGGTCGGAAGCGAAGGCCCCGAAAGGAAAAAGATTAAGCTTGCATCGATCCAGAATGATAGAAGGTCCTTGCACAGTCCACCCAAGCAAGGCATGGCAAATGTTTCTGGAAAGTTTTCTCCACATAAACCTTATGTCAACTCTACCATGAAGAGGGATCCACATCAAACTCTTACAAAGCAATCACCTTTGAACAGAAGTCAGAATGCAGAAAATGTTGCTCTAAAAAAAGAACCTGTCACACCTATAAAACAAGTGCAGTCTGCATCGAGTCAATTAGAAAGTGATGATGATGTTCCTTTGATTGCAAGAGCCCAGCACAAACCTGCTGCAGCAAATGCCAAAGGTTCATCTGCAAAACCAGCAAAATCTGCTTTAAACAGTGTTGTGGCCGAAAAGAACAAAGTTGTTAAACCTAAAAAGAGTGAAAAGATGAAAGACGGGAAATCATTGAAAGCTGAGAGGAAGGTTGACAAAAAAGTGGATGGAGTGAAAAAGAAGGATGCAAAGAAAGAAAAGAAATCAGCCAGTGAAAAAGCTGCAAAGAAACAAGTTGATAGTGATGATGATGATGAGCCTTTGTCTGCAAAATTAGGTACCCCCAAAGACAACAAATCTGCAAAGTCCTCAGGATCATCTGGCACTAAGTCAAAGGGCTCAGCCTCTCTTAAAAGAAAGAAGAGTGCAGACTCAGGAAGTGACAGTGATGATGATTATAAACCTTTGGTCAAGACTGCTAAGAAAAGTACTCCTAAGATAGCAAAGAAGGAGGACAAGGGTGGCTCCATAAAAAAGAAGGTTAAAAAAGATGCAAAGGATAAAAAAGAAGAAGACAAGGCAAAGGAAAAAGGAAAGAAAAAGAAAGAAGAGGAGAAAGAAGTGTGGAAGTGGTGGGAAGAAGAACAGCTCCCTGATGGTGTCAAGTGGCTTCATTTGGAGCATAAGGGTCCGTATTTCCCACCTTTGTATGAGCAGCTACCTTCTGATGTCAAGTTTTATTATGATGGAAATCACATGAAACTTAGTTTAGCAGCAGAAGAGGTGGCATCATATTATGCTAAGATGCTTGACCATGATTACACCAGCAAAGAGATCTTCAACAAGAATTTTTTTGAAGACTGGAGGAAAGAAATGACAAATGAAGAGAGAAAGATCATCAAAGATCTCAAGAAATGTAACTTCAAAGAAATGCACAGTTACTTTGTTAAGAAAAACGAGGAGAGGAAAAATTGGACAAAGGAACAGAAACAGGTGCTCAAAGAACAAAATGAGGCAATTCTGGAAGAGTATGGTTATTGTCTCATGGATGGACACAGGCAAAGGGTCGGCAACTTCAAGATTGAACCCCCTGGTTTGTTCCGAGGACGTGGAGACCACCCTAAGCAGGGGAAATTTAAGAGGAGAACTATGCCAGAAGATGTGATCATAAACATTGGCGAAGGGGCAAAAGTTCCAGAACCACCAGAAGGGCACAAATGGCAAAAAGTTATTAATGACAACAAGGTTTCCTGGTTGGCCTGCTGGGTTGAGAACATCCAAGGAAGTTATAAGTATGTCATGTTGAACTCCACGTCAAGGTTAAAGGGGGAAAAGGACTGGCAAAAGTATGAAACAGCAAGAAAATTGAAGGACTGTGTTGAAAAAATCAGAGAAGACTATCAGCGGGATTGGAAGGCCAAAGAAATGAGACTACGGCAAAGAGGTGTCGCCCTTTACTTTATTGACAAGCTGGCTCTTCGTGCTGGACATGAAAAAGATGAAGAAACTGCGGATACTGTTGGCTGTTGTTCATTGAGATTTGAACATATCAAATTGCATGATGAATGGGAAGACAAGGAGAATGTCGTAGAGTTTGATTTCCTCGGTAAAGACTCTGTCCGATACTGGAACTTTGTTCCAGTGGAAAAGAAGGTTTTCAAGAATCTAGCCATTTTTATGAAAGGAAAACAGAATGGTGATGATCTTTTTGACAGATTATCTACAACTTCTTTGAACAAGTACTTGTCAGAGCTGATGGATGGACTTACAGCCAAGGTATTCAGAACATTCAATGCCTCCATGACACTCCAAGATCAACTAAACAAGTTAACAGAAGCTGAGGACAATGTCAATGCAAAAGTGTTAGCATACAACAGAGCAAACCGTGCTGTGGCCATGCTATGCAACCATCAGCGCACAGTCCCCAAGACCTTTGAAAAATCGATGTCAAATCTTCAAGAGAAGATTGCTGCAAAAAAGCAAGCAATCAAGGATGGGAAGAAAGAACTAAAGGTTTTGAAAAATCATGCAAAAGAAAGCCAAGATACAAAAGTGATGAAGCAACTAGACAAGAAAAAAACTCAGGTTCAAAAGTTGGAGGATCAGCTCTTTAAGTTGGAGGTGACAGCAACAGACAAAGAAGAAAATAAAGAGATCGCACTTGGTACCTCAAAACTTAATTATTTGGACCCACGAATTTCAGTGGCATGGTGCAAGAAACATGGGGTGCCAATTGAGAAAGTTTACAACAAGACACAACGTGAGAAGTTTGCCTGGGCTCTTGACATGGCAGAAAAAGACTTTGTTTTTTGA

Transcript

rna-Spis7977_mrna

TGGAGAACGACACTTAGAAaattttcgttcaattttttgCCGGAATGAACGGGGAAGCCATTCAACACGCCACTCTGTTACAAAAGCCGATGAGAGAAGAAGTGGCATCTGGAGATGATGACCTAGCTCTGGCACAGGCGAAACAAAAGCCGGTCGGAAGCGAAGGCCCCGAAAGGAAAAAGATTAAGCTTGCATCGATCCAGAATGATAGAAGGTCCTTGCACAGTCCACCCAAGCAAGGCATGGCAAATGTTTCTGGAAAGTTTTCTCCACATAAACCTTATGTCAACTCTACCATGAAGAGGGATCCACATCAAACTCTTACAAAGCAATCACCTTTGAACAGAAGTCAGAATGCAGAAAATGTTGCTCTAAAAAAAGAACCTGTCACACCTatAAAACAAGTGCAGTCTGCATCGAGTCAATTAGAAAGTGATGATGATGTTCCTTTGATTGCAAGAGCCCAGCACAAACCTGCTGCAGCAAATGCCAAAGGTTCATCTGCAAAACCAGCAAAATCTGCTTTAAACAGTGTTGTGGCCGAAAAGAACAAAGTTGTTAAACCTAAAAAGAGTGAAAAGATGAAAGACGGGAAATCATTGAAAGCTGAGAGGAAGGTTGACAAAAAAGTGGATGGAGTGAAAAAGAAggatgcaaagaaagaaaagaaatcagccaGTGAAAAAGCTGCAAAGAAACAAgttgatagtgatgatgatgatgagccTTTGTCTGCAAAATTAGGTACCCCCAAAGACAACAAATCTGCAAAGTCCTCAGGATCATCTGGCACTAAGTCAAAGGGCTCAGCCTCTcttaaaagaaagaagagtgCAGACTCAGGAAGTGACAGTGATGATGATTATAAACCTTTGGTCAAGACTGCTAAGAAAAGTACTCCTAAGATAGCAAAGAAGGAGGACAAGGGTGGCTCCATAAAAAAGAAGGTTAAAAAAGATGCAAAggataaaaaagaagaagacaaggcaaaggaaaaaggaaagaaaaagaaagaagaggagaaagaagTGTGGAAGTGGTGGGAAGAAGAACAGCTCCCTGATGGTGTCAAGTGGCTTCATTTGGAGCATAAGGGTCCGTATTTCCCACCTTTGTATGAGCAGCTACCTTCTGATGTCAAGTTTTATTATGATGGAAATCACATGAAACTTAGTTTAGCAGCAGAAGAGGTGGCATCATATTATGCTAAGATGCTTGACCATGATTACACCAGCAAAGAGATCTTcaacaagaatttttttgaagactggAGGAAAGAAATGACAAATGAAGAGAGAAAGATCATCAAAGATCTCAAGAAATGTAACTTCAAAGAAATGCACAGTTACTTTGTTAAGAAAAACGAGGAGAGGAAAAATTGGACAAAGGAACAGAAACAGGTGCTCAAAGAACAAAATGAGGCAATTCTGGAAGAGTATGGTTATTGTCTCATGGATGGACACAGGCAAAGGGTCGGCAACTTCAAGATTGAACCCCCTGGTTTGTTCCGAGGACGTGGAGACCACCCTAAGCAGGGGAAATTTAAGAGGAGAACTATGCCAGAAGATGTGATCATAAACATTGGCGAaggGGCAAAAGTTCCAGAACCACCAGAAGGGCACAAATGGCAAAAAGTTATTAATGACAACAAGGTTTCCTGGTTGGCCTGCTGGGTTGAGAACATCCAAGGAAGTTATAAGTATGTCATGTTGAACTCCACGTCAAGGTTAAAGGGGGAAAAGGACTGGCAAAAGTATGAAACAGCAAGAAAATTGAAGGACTGTGTTGAAAAAATCAGAGAAGACTATCAGCGGGATTGGAAGGCCAAAGAAATGAGACTACGGCAAAGAGGTGTCGCCCTTTACTTTATTGACAAGCTGGCTCTTCGTGCTGGAcatgaaaaagatgaagaaactgCGGATACTGTTGGCTGTTGTTCATTGAGATTTGAACATATCAAATTGCATGATGAATGGGAAGACAAGGAGAATGTCGTAGAGTTTGATTTCCTCGGTAAAGACTCTGTCCGATACTGGAACTTTGTTCCAGTGGAAAAGAAGGTTTTCAAGAATCTAGCCATTtttatgaaaggaaaacagaatGGTGATGATCTTTTTGACAGATTATCTaCAACTTCTTTGAACAAGTACTTGTCAGAGCTGATGGATGGACTTACAGCCAAGGTATTCAGAACATTCAATGCCTCCATGACACTCCAAGATCAACTAAACAAGTTAACAGAAGCTGAGGACAATGTCAATGCAAAAGTGTTAGCATACAACAGAGCAAACCGTGCTGTGGCCATGCTATGCAACCATCAGcGCACAGTCCCCAAGACCTTTGAAAAATCGATGTCAAATCTTCAAGAGAAGATTGCTGCAAAAAAGCAAGCAATCAAGGATGGGAAGAAAGAACTAAAGGTTTTGAAAAATCATGCAAAAGAAAGCCAAGATACAAAAGTGATGAAGCAActagacaagaaaaaaactcaggTTCAAAAGTTGGAGGATCAGCTCTTTAAGTTGGAGGTGACAGCAacagacaaagaagaaaataaagagatcgCACTTGGTACCTCAAAACTTAATTATTTGGACCCACGAATTTCAGTGGCATGgTGCAAGAAACATGGGGTGCCAATTGAGAAAGTTTACAACAAGACACAACGTGAGAAGTTTGCCTGGGCTCTTGACATGGCAGAAAAAGACTTTGTTTTTTGATCCAGGCTTTTCCATGAACACAGCTAGCATAGTAGTCATTCAATTTTAGCTCACATATGCTTACACTTGTCATGGACCTCAtatataatttaattt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02919 all species →	Topoisom_I_N	Eukaryotic DNA topoisomerase I, DNA binding fragment	Family	Interproscan
PF01028 all species →	Topoisom_I	Eukaryotic DNA topoisomerase I, catalytic core	Domain	Interproscan
PF14370 all species →	Topo_C_assoc	C-terminal topoisomerase domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008336 all species →	Domain	DNA topoisomerase I, DNA binding, eukaryotic-type	Interproscan
IPR051062 all species →	Family	DNA topoisomerase IB	Interproscan
IPR001631 all species →	Family	DNA topoisomerase I	Interproscan
IPR048045 all species →	Domain	DNA topoisomerase I, DNA-binding domain	Interproscan
IPR036202 all species →	Homologous_superfamily	DNA topoisomerase I, DNA binding, eukaryotic-type, N-terminal domain superfamily	Interproscan
IPR014727 all species →	Homologous_superfamily	DNA topoisomerase I, catalytic core, alpha/beta subdomain	Interproscan
IPR013500 all species →	Domain	DNA topoisomerase I, catalytic core, eukaryotic-type	Interproscan
IPR013034 all species →	Homologous_superfamily	DNA topoisomerase I, DNA binding, N-terminal domain 1	Interproscan
IPR014711 all species →	Homologous_superfamily	DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type	Interproscan
IPR013030 all species →	Homologous_superfamily	DNA topoisomerase I, DNA binding, N-terminal domain 2	Interproscan
IPR013499 all species →	Domain	DNA topoisomerase I, eukaryotic-type	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR018521 all species →	Active_site	DNA topoisomerase I, active site	Interproscan
IPR025834 all species →	Domain	Topoisomerase I C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10290 all species →	DNA TOPOISOMERASE I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003917 all species →	Molecular Function	DNA topoisomerase type I (single strand cut, ATP-independent) activity	Interproscan
GO:0006265 all species →	Biological Process	DNA topological change	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0007059 all species →	Biological Process	chromosome segregation	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03163	TOP1; DNA topoisomerase I	EC:5.6.2.1	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.