Gene detail

Detailed information of PFX27421.1 in Stylophora pistillata

Genomic Location: Spis.scaffold104:467289...491090
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Depdc5

ATGAAGCTTTTTAAGTTATGGGTCCATCAGCAGAACTTCAGTGAGGATGATCTCATACTAAATCCTAAGGAATTTCCGAACGAGAGAGAGGGAGACATCTTGGAGATTCATCACCCCGATGAAGACAATACTCGTCTTTTGCTGCAGATTAAATCGATTAATCCTGAATTTCAACAGAAAGATACAATCAGCATCGAACAGTCTGTGGCTAACATCTTTCAGTTGAGAACTTACTGGGATGTGGAGGTCACCAAGATTGAACCAAAAGATGTGTCTGTGGACATGGTGGAACTTTTGTTTAAAGACCAGTTCGTCACGAGGAGCGAAATGTGGAGATTTTCCAAACAGCTCGTTGGCTCGTGTGTTTATATCACCAAGAAGCTGTCACATTTTGGGGTGCGGGCTCAGGTTAATGAGATCTGGACTAAGGGAGAGAAGGTGTCCTGTGGAGTGATATCCGATGATACCAGGGTGGTTTTTAGATCAAGTAGCACAAAGATGTATTTATTCATACAAATGAGTAAAGAAATGTGGGACTTTGACTTCAGTGGAGATCTTTATATTGAAAAGGCAATCAATGGATTTTGTAATGAATTGTTTACCAAATGGAAGGAGCTTAAAGCCCACCATGATGTCAGTATTATTCTGTTTTCAAGAACATTTTACAATGCGCAATCTCTTGAGGACTTTCCTAAAGACGCTCAAGGATGCATTCAAAAGGATCCTTACGGACGCTTTTATGAAGATTTCTACCAAGTTGTTGCTTTATCAGACAGGCGTGATGACTGGATCCCTATGCTAGTCACTCTGAAGCACTGCTTTAACCAATATCCAAACCTCACGAACTGTTGTGATAAGTTGAAAGGCACAAAAATCAAGGGTAAAAATTCCAGCTCTTATGAGGGAAACTTTCTAGAAGCTATAAACTTGGCAATGAATGCATTTGAAAGGCACCACATCGATCGTAACTTTAGTCGTACCGGGCAGACGGTTATCATTGTTGCACCTGGGTCTGGAGTGTTTGAGGTGGACAGAGAAATGACCAGCATAACCAAACAGCGTCTACTGGATAGCGTGTACACTAATTTTGCGGAACACCGCAAGACAGAAGTGGGAGACGGCCAGCTGCCAGATCGGGTGGATTATGATGAATATGACGCCAAAATATTCAGGAACCCGCCCACCCACTCGACCCTGAAGGGCTGGGCACCCAGAGGTACGAACTTCAGACGAATACGAAGCGCCCTCGATTTGCAGCGAATGGCCAAGTCTATGTCAAAAGAAGAACCCATTTTCCACCGTATTTCCTCGCCTCCTAGAGGGGTATCGTCCTATGAGGACATGGAGATTTCAGCTTCTTTTAGCGCGCTGACGGACCGAGATGCTGCATCCATTAAGACCCTGGACAATAGAGAAACCCATGTACTCTCTTCATCTCTGGAGTTTACGTCTCATGGTGTCCTCGCTTCACTTTCCGAAAATACGGTGGTAAATGGAACTTCTCATGAAATCATTCGACCAGTTCCTCGCCGGTTTGCGGTTGGAAGTGCAGGCGCAAGTCGCCATGAGATCCCTGGTCATTCACGGCCCCAAAGGACCCTAATAAACCCTTTTAAGCCGAACGAGATTCCTTGTAACTGGACCTGTAACCGACATCGGTGGTCACACGTTTTTCCCAAGGGGCCTGGTGGAGAGGTTCTCCATCGACATTATAAGAAACTTTCACCAGCTGAAAGCATCACACAAATTAAGACTGAAAAGTCACGAGGTGTCGAAGAAGCAGCACTTGCTGTCGTGGCCGCTCGCACACAGGAAATCTCAGAAGCACAGTTTAAGAGCATTACAGAGGAGCAACCCCCATTAGACGCCTTGATGATTAGTGAAGAAAATGAAGATACGTACGAAGATAACGCTATCATCCCCGAGCCATCGTCGGGTATTCTCGGCCATTTCAGCCCGATTTCCGAACCTTCAAAGACAACACAGAATCCGACACCAAGGCGCCGATCTCAACTGTCACGTTTTAATTTGTATCGAGGGATGGAGAAAACTCCTGATGAATATGATTGGACAGCTGCTGTCAAGACGAGTGTGGATTGGAAATCGTTGACATGTCCTGCCCTTTTACCTCTGACCTCATATTTCAGCCCAAGCAAACAGACATTGGAAAACGATTACCTGGAATCTAATTACAATCTGTTAATTGAAGAAGAGGAGGAATACACAGAAGAGAAGAAGACTTCTGGCTGGGGAAAACAGGAGAGTCTGCCGGAGGAAGATTCACATGGAGCTCGTCGAGATTTAAGCGCGGAGATGTTATTCATGGAACTTGTCTCTCAACGAATTCGCAAGGGATTTCAGTTGACCCCACTGAAGGGTAAACCAGCCCCTCCTATTAAGCCCCAGTCCATCGCAGGCACACCGGCCAAGTCAGATCATCAGGAATTCTTTCTTAGCATTGGACGGAACTCGCACAAGTTAAGCTTGACTTCACATGGAGTAACAGTAACCAGGTATCGCCTTTGGATTCCACAAACAAAGTTGTTTGAGCCAAATGATGGGGAATTCCGGCATGAGGAAATGGAAAATTATAACTGGAACTACTTAGACCAGTATCTGTGCGGAGATCCTGATTTTAATGTGCTTATTGAGAGTCTTCATTACTGGAAAGCTCGATTCCTGCTATTGCCATTTTCGCCATTGTCTCAGCGTCAAATCAAAGAATCAGGTCGTGAAGAAAAGAAGAAAACGTCAACTCAACAGGCCGACGCAATGGATGGAATTGTCAGGTTCCTTGAGGTGCTTAATCGAATAAAACGTCATCAAACGCAAAAAACTCTAACAAATCCTAAGGATCGAAAACAATCCGATGTGTCTTTACCAACTCGTCGAATTAGTAAACAGCAGGAGCATAAAGTATCCCGACCCATTTCTTGTGAGTTGACAGTATCAAGAGAAAACAGCTCTGTTCCCAGTAGTCCGCTGACCAACAGATCGCGGTCTTCCTCGGGAATAGGAGACGAACTTGGAAGTGCAGATTCTCATGCCAGTCCCTCTCGAGAGTTACCGGGAAAGGGCATGACTTTCCTACCAGAGGTCAAAGGGCTAAAACCCACAAGCTTTCTGAGTGTGGAGGCGATCTCATGGATTTTACACAACGTGGAAGGAATTAATGCAAAGGAAGAAGCCACTCGACTCTGCCAGAAATTGTTGGAAAGAGGCTTTATCAACCAAGCTTCTGACAGCACTGCTCAGAAACTGGTAGAGGGATTTGTCATCTTTTATTTCACTCCAAAGTCTTGTTGGAGAGAAAAAACGGAAGATATGCTGGAAGTTACTGATCGTCCTCCTGTATCTGAGCCCGATATTTTACATGCCTTTCAAAATGATTGGTTCGAGGTCGATCTCTGGTCAACCAAACCTGAGAAGGAGACCCCAGAATTCTTAGCGCCTGATCTAGAGATCGTTTCAAGTCTGGCGGGTTCGTCGGTTCGGAAGCTCCATTCGGAAAGCGGCCATGGCTGCGGTCCTGCTTATAAGTTCGTCACGTTAAATGCTGATCCTTCCCACAAGAGCCAACGTCCAGAATCTTGCACTGTTCGTTACCATGGCGACTTCTCATCTCTTCATGCGTTTGAGCTCGAACTGCATTGGATAGCAGCAACTGGGTGCATCGTGAGCGACATGGTTAGTTCTTGGTCAAGGAAGGCGCCGTCCTGCGGTTTTCATCTTGTCCCCGTCCCAGTAAGTCCATTCCCTGATCGGAAAAGTAGGAATGTGGATCCTTTTCGTTTACCGGTTTTCATTCAGCTGAATCTGTCCAACTTAACTGCAGACGCTGGCAGCCTCTTTGAAGAATTCGAGTATTCCACCCGAAGTCGAAGAATGTTTTTATTCTTGGAGGCCATCCTTCAAAGGTTTGGTTTTATCCGGGACAAGCCTTATGGTTCAACGCACGTGAGTTCGCGGAGTATGCAAGTGACTCCCGTGCAGTGTCGCGAGAAGGACTACGTGCACACGAGCGGCGTCGCCTTTGTCCGAATCCCACGGAACTGGGACGAAGATGAGTATCCTGTAACGAGTGGTCTGCTCAGGAAAGAGAAGGAGCAACTGTCAAGCCGAACCTGGGGATTTAACTGGATGCAAAACTATATGTTGACAAAAAGGTGGCGCTCTGCGGCGACGGGAGATAATGAAGCTGCTGAAAGACTGAGGGGTGAATTGCAAGACTTCTGTGCAGACAAGGAAGGTGTTCTGAGCAGCTTTTGGGAGTCATGCCAAGAAGCCGCAAGAAAAGATATACAAAAACCAATTGAAAAAGAGGAGGCCGAAGCCAAATGA

Transcript

rna-Spis7904_mrna

ATGAAGCTTTTTAAGTTATGGGTCCATCAGCAGAACTTCAGTGAGGATGATCTCATACTAAATCCTAAGGAATTTCCGAACGAGAGAGAGGGAGACATCTTGGAGATTCATCACCCCGATGAAGACAATACTCGTCTTTTGCTGCAGATTAAATCGATTAATCCTGAATTTCAACAGAAAGATACAATCAGCATCGAACAGTCTGTGGCTAACATCTTTCAGTTGAGAACTTACTGGGATGTGGAGGTCACCAAGATTGAACCAAAAGATGTGTCTGTGGACATGGTGGAACTTTTGTTTAAAGACCAGTTCGTCACGAGGAGCGAAATGTGGAGATTTTCCAAACAGCTCGTTGGCTCGTGTGTTTATATCACCAAGAAGCTGTCACATTTTGGGGTGCGGGCTCAGGTTAATGAGATCTGGACTAAGGGAGAGAAGGTGTCCTGTGGAGTGATATCCGATGATACCAGGGTGGTTTTTAGATCAAGTAGCACAAAGATGTATTTATTCATACAAATGAGTAAAGAAATGTGGGACTTTGACTTCAGTGGAGATCTTTATATTGAAAAGGCAATCAATGGATTTTGTAATGAATTGTTTACCAAATGGAAGGAGCTTAAAGCCCACCATGATGTCAGTATTATTCTGTTTTCAAGAACATTTTACAATGCGCAATCTCTTGAGGACTTTCCTAAAGACGCTCAAGGATGCATTCAAAAGGATCCTTACGGACGCTTTTATGAAGATTTCTACCAAGTTGTTGCTTTATCAGACAGGCGTGATGACTGGATCCCTATGCTAGTCACTCTGAAGCACTGCTTTAACCAATATCCAAACCTCACGAACTGTTGTGATAAGTTGAAAGGCACAAAAATCAAGGGTAAAAATTCCAGCTCTTATGAGGGAAACTTTCTAGAAGCTATAAACTTGGCAATGAATGcATTTGAAAGGCACCACATCGATCGTAACTTTAGTCGTACCGGGCAGACGGTTATCATTGTTGCACCTGGGTCTGGAGTGTTTGAGGTGGACAGAGAAATGACCAGCATAACCAAACAGCGTCTACTGGATAGCGTGTACACTAATTTTGCGGAACACCGCAAGACAGAAGTGGGAGACGGCCAGCTGCCAGATCGGGTGGATTATGATGAATATGACGCCAAAATATTCAGGAACCCGCCCACCCACTCGACCCTGAAGGGCTGGGCACCCAGAGGTACGAACTTCAGACGAATACGAAGCGCCCTCGATTTGCAGCGAATGGCCAAGTCTATGTCAAAAGAAGAACCCATTTTCCACCGTATTTCCTCGCCTCCTAGAGGGGTATCGTCCTATGAGGACATGGAGATTTCAGCTTCTTTTAGCGCGCTGACgGACCGAGATGCTGCATCCATTAAGACCCTGGACAATAGAGAAACCCATGTACTCTCTTCATCTCTGGAGTTTACGTCTCATGGTGTCCTCGCTTCACTTTCCGAAAATACGGTGGTAAATGGAACTTCTCATGAAATCATTCGACCAGTTCCTCGCCGGTTTGCGGTTGGAAGTGCAGGCGCAAGTCGCCATGAGATCCCTGGTCATTCACGGCCCCAAAGGACCCTAATAAACCCTTTTAAGCCGAACGAGATTCCTTGTAACTGGACCTGTAACCGACATCGGTGGTCACACGTTTTTCCCAAGGGGCCTGGTGGAGAGGTTCTCCATCGACATTATAAGAAACTTTCACCAGCTGAAAGCATCACACAAATTAAGACTGAAAAGtcaCGAGGTGTCGAAGAAGCAGCACTTGCTGTCGTGGCCGCTCGCACACAGGAAATCTCAGAAGCACAGTTTAAGAGCATTACAGAGGAGCAACCCCCATTAGACGCCTTGATGATTagtgaagaaaatgaagataCGTACGAAGATAACGCTATCATCCCCGAGCCATCGTCGGGTATTCTCGGCCATTTCAGCCCGATTTCCGAACCTTCAAAGACAACACAGAATCCGACACCAAGGCGCCGATCTCAACTGTCACGTTTTAATTTGTATCGAGGGATGGAGAAAACTCCTGATGAATATGATTGGACAGCTGCTGTCAAGACGAGTGTGGATTGGAAATCGTTGACATGTCCTGCCCTTTTACCTCTGACCTCATATTTCAGCCCAAGCAAACAGACATTGGAAAACGATTACCTGGAATCTAATTACAATCTGTTAATTGAAGAAGAGGAGGAATACACAGAAGAGAAGAAGACTTCTGGCTGGGGAAAACAGGAGAGTCTGCCGGAGGAAGATTCACATGGAGCTCGTCGAGATTTAAGCGCGGAGATGTTATTCATGGAACTTGTCTCTCAACGAATTCGCAAGGGATTTCAGTTGACCCCACTGAAGGGTAAACCAGCCCCTCCTATTAAGCCCCAGTCCATCGCAGGCACACCGGCCAAGTCAGATCATCAGGAATTCTTTCTTAGCATTGGACGGAACTCGCACAAGTTAAGCTTGACTTCACATGGAGTAACAGTAACCAGGTATCGCCTTTGGATTCCACAAACAAAGTTGTTTGAGCCAAATGATGGGGAATTCCGGCATgaggaaatggaaaattataACTGGAACTACTTAGACCAGTATCTGTGCGGAGATCCTGATTTTAATGTGCTTATTGAGagtcTTCATTACTGGAAAGCTCGATTCCTGCTATTGCCATTTTCGCCATTGTCTCAGCGTCAAATCAAAGAATCAGGTcgtgaagaaaagaagaaaacgtCAACTCAACAGGCCGACGCAATGGATGGAATTGTCAGGTTCCTTGAGGTGCTTAATCGAATAAAACGTCATCAAACGCAAAAAACTCTAACAAATCCTAAGGATCGAAAACAATCCGATGTGTCTTTACCAACTCGTCGAATTAGTAAACAGCAGGAGCATAAAGTATCCCGACCCATTTCTTGTGAGTTGACAGTATCAAGAGAAAACAGCTCTGTTCCCAGTAGTCCGCTGACCAACAGATCGCGGTCTTCCTCGGGAATAGGAGACGAACTTGGAAGTGCAGATTCTCATGCCAGTCCCTCTCGAGAGTTACCGGGAAAGGGCATGACTTTCCTACCAGAGGTCAAAGGGCTAAAACCCACAAGCTTTCTGAGTGTGGAGGCGATCTCATGGATTTTACACAACGTGGAAGGAATTAATGCAAAGGAAGAAGCCACTCGACTCTGCCAGAAATTGTTGGAAAGAGGCTTTATCAACCAAGCTTCTGACAGCACTGCTCAGAAACTGGTAGAGGGATTTGTCATCTTTTATTTCACTCCAAAGTCTTGTTGGAGAGAAAAAACGGAAGATATGCTGGAAGTTACTGATCGTCCTCCTGTATCTGAGCCCGATATTTTACATGCCTTTCAAAATGATTGGTTCGAGGTCGATCTCTGGTCAACCAAACCTGAGAAGGAGACCCCAGAATTCTTAGCGCCTGATCTAGAGATCGTTTCAAGTCTGGCGGGTTCGTCGGTTCGGAAGCTCCATTCGGAAAGCGGCCATGGCTGCGGTCCTGCTTATAAGTTCGTCACGTTAAATGCTGATCCTTCCCACAAGAGCCAACGTCCAGAATCTTGCACTGTTCGTTACCATGGCGACTTCTCATCTCTTCATGCGTTTGAGCTCGAACTGCATTGGATAGCAGCAACTGGGTGCATCGTGAGCGACATGGTTAGTTCTTGGTCAAGGAAGGCGCCGTCCTGCGGTTTTCATCTTGTCCCCGTCCCAGTAAGTCCATTCCCTGATCGGAAAAGTAGGAATGTGGATCCTTTTCGTTTACCGGTTTTCATTCAGCTGAATCTGTCCAACTTAACTGCAGACGCTGGCAGCCTCTTTGAAGAATTCGAGTATTCCACCCGAAGTCGAAGAATGTTTTTATTCTTGGAGGCCATCCTTCAAAGgtttggTTTTATCCGGGACAAGCCTTATGGTTCAACGCACGTGAGTTCGCGGAGTATGCAAGTGACTCCCGTGCAGTGTCGCGAGAAGGACTACGTGCACACGAGCGGCGTCGCCTTTGTCCGAATCCCACGGAACTGGGACGAAGATGAGTATCCTGTAACGAGTGGTCTGCTCAGGAAAGAGAAGGAGCAACTGTCAAGCCGAACCTGGGGATTTAACTGGATGCAAAACTATATGTTGACAAAAAGGTGGCGCTCTGCGGCGACGGGAGATAATGAAGCTGCTGAAAGACTGAGGGGTGAATTGCAAGACTTCTGTGCAGACAAGGAAGGTGTTCTGAGCAGCTTTTGGGAGTCATGCCAAGAAGCCGCAAgaaaagatatacaaaaaccaattgaaaaaGAGGAGGCCGAAGCCAAATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19418 all species →	DEPDC5_CTD	DEPDC5 protein C-terminal region	Family	Interproscan
PF12257 all species →	IML1	Vacuolar membrane-associated protein Iml1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045838 all species →	Domain	DEPDC5, C-terminal	Interproscan
IPR000591 all species →	Domain	DEP domain	Interproscan
IPR048255 all species →	Domain	Vacuolar membrane-associated protein Iml1, N-terminal domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR027244 all species →	Family	Vacuolar membrane-associated protein Iml1	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13179 all species →	DEP DOMAIN CONTAINING PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0010508 all species →	Biological Process	positive regulation of autophagy	Interproscan
GO:0034198 all species →	Biological Process	cellular response to amino acid starvation	Interproscan
GO:1904262 all species →	Biological Process	negative regulation of TORC1 signaling	Interproscan
GO:1990130 all species →	Cellular Component	GATOR1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20404	DEPDC5, SEA1; SEA/GATOR complex protein SEA1/DEPDC5	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.