Gene detail

Detailed information of PFX27589.1 in Stylophora pistillata

Genomic Location: Spis.scaffold100:463798...480883
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Usp40

ATGTTCGGATCTCTTTTTGAAACCGATGGAGATAAGTTGGAAAACAAGAACTCGGCTGCTACCGTCAGAGTTTCCAAACAGAACAAGTCGAACTGGCCACCTGAACCAAGAGGGCTGACTGGAATCTGTGGTCTGCAGAATCAAGGAGCCACTTGTTATTTGAATTCTCTACTGCAGACGTTATTTTTCACTCCAGAATTTAGAGATGGTTTGTTGCAGCTTACATTGGAAGATCTGAGTTGTGATTTGAAAGATGGAACATATGCTAAGGTCAGAGTGATACCACTTCAACTTCAGAAATTGTTTGCAAAGCTTCTGCTGCTTGATCAAGATAGCATTAACACTTCTGAATTGACAGATAGTTTTGGTTGGACAGGAAATGAGGGATTTCAACAGCAAGATGTTCAAGAATTGAACAGAATCTTGTTTGGCGCTTTAGAATCATCTCTTCTTGGCACCCCAGGAGAAGCTTTGATCAAGAATCTGTATCATGGAACCTCTGTAACAAAGGTAACTTGTCAAGAATGTTGGAAAATCAGTGAAAGAGAAGAGGATTACCTTGACCTTCCATTAATTCTCTCTGGGTGCAAAGACTTGGAAGAGAGTCTTTCTATGAGTTATGTTGCCATGGAGATTTTGGAGGGAAGAAATCAGTATAAGTGTGGATCATGTAACAAGCTTGTCAATGCTATAAAGGGGTGTAACATAAGTACAGTGCCTCCCATCCTGACGTTTTCATTGCTGAGGTTTGATTATGATTTTCGAAGAGGTGAACGGTTTAAGGACTGTAAAAGATACTCCTTTCCATTCACATTGAACATGAAAGAATTTTGTGAATCAAGTGATGCTGTTGGAGCAGATCAAGAATATGAGCTGTTTTCTGTTGTCATTCATGGAGGTAGTTGTTATGGAGGACACTACCACGTGTATATTCGTGATGTTGAAGGATTGCGAACCTGGCATCCACCTGTAAAGGAGCAAATGAAAGTTGTCAGAGAAAATGATGGTGGTGAGAAAGATTTCATGAACTGTGGTAACCCTGTGGACTTGATTATCAGTCTACTGAAGAAGCTTGGTGGTGCCGCATCTGTCAATCAGTTATTTCAGTGTATGTCAAAGGAAACAGGGATTTCTTGGAATAAGTGTTTTAAAAGTCAGTATGGACCTCTAACAAAGTTCTTCAAGAAGCACTCTGATGTGTTCAGGTTCAGTGATGCAGCAGGTTATGTTTCACTACAAAATGGTAACAATGGAAATTCCAGCAGCCCATCAACAGCACTGGTCCAACAACAAGCTGAACACAGGAAACTTGAAGATGATGTTCCTAAAAGAAACTGCCAAGCTGTAGTGGTCGATGGAAGTTTGTCTGAGCATGGACATCACTGGTTTGACATAAATGATTCAAGGATATCTTGTATTCATGAGAAAGACCTCCAACGTCAGTTTGCTGGAAAGGAAAGTGCCTATATGCTGTTTTACAGAAGGAAAAACCTTCCTGCCTGTGTGGAAGATCCAGTTCTCTTGGTCCCTGCTCCCATTAGAGCTGAGATTGACAAACTAAATGAAGATTTAGTAAAGCAGAGAAAAGAATATGACCGTCATCTAAATGAAATTTCTGTTGGTGTGCATTTTGGAGACAACTATTCAGTGACAGACAGTGTCCTGCATCTTAAACAGGGAGTATCTGGTGAACCACTGATTATGTTACTGGATAGGAGAAAGCCTGTAAATGATCTCTTACAAACTGTTCTTAAGCTTGACCCACCTGGAAATAATTCAGAATGTAACACTCTTCACATTGCTCGACCATTACCATCAGGTCTCCATCTCTTTGAAGAACTAACAGAATATCCAGAAAAGTCTCTTATACAAAGTGGAGTGAGTGGAGGTACAGATGTATTTCTATGGAATGGAAAAGAGGTTGATGGATACTCAGTGTATCCAGGAGAAGACTCGACACCAGTGCTGCTCAACATACTATATTCAACGTTTCAGCTGCAAGATGCAGTTGAAATTCAGAAGCATCATTTTAGAAAGAACACAACAGTGGGAGAAATGAAGATTAAGTTGTGCGATTCTGTTGGTACAAATCATCAAGATTTGCGTCTAAGCTGGGTGAAGTCAAAAGGTAAAACCAAGCAAATAATCCCTTTAGATTCTGATCAGGATAGTAATACGCTGAACGAAATCGGTCTACAAGATGGCGACCAATTGGTGGTTAGAAAACATGATGGAGCGCAATCCAGTGAACAGAGTATGCCTCCATTAGCTTCTGAAGGAAAGGAGAAAGCTACCAGTCTGCTGTCCTTTGTGGTTGAGAATAGGTGTTTGATGCGAGAGTCTAAAGAACTGGTCGACAATGACAGTAGTAAAGGTTGGCCAGTTTTGTCCGTTAAGGTTCATAAAGGGCAGACTGTTGGTGATCTCAAAGCCAAAGTTCTGGAACGTACAGACTGTAATGGTGTCTCAGAAAACGCATGTCGTCTACGGTCAGATGGCGATTATCAAGGTCTTAGTGCTCCATTGTATGAACATGAAACTTTGGAGAAGTCTTCGCTCAATGAAGGTCAGCGGCTTGTATTGGAGCATGCGCCCCCTCTTCTTCAAGGGGAAATCATGATCCGTTACTTCATATGTTCCTCCACACATACCAGCAGGAAAGAAGAGGAACAAACTGTTCTTAAAACGTGCACCATTCGTAAGTGTCTACAACTTTTGATGGAAAATTCTAACCTACAAGGAGCGACCTGGCATTTAAGGAAAACTGACTGGATCGGTGAACCAACTGACGTGTTAGACAACGAGGACGAGACGCTGGAGAATGAAAATATTAAAAATGGCGACACTCTCATTGTTGAAGAGGGAAGGATTCCCCCAAAGGGGTTCATTCGTCTTAAGTTATGGCAAAAAATCAGTGGTAAGGCAAAAGGCCAACATCTTGGAGGGGTTTTAAACTGGATTACATCTGGTGTACAAGGTCTCTTTGGTTCGTCCGCAGAGGAGAAATTAGGTTATGATGGCAACGCAGAGGGTAGCGATTCATTGGAACCTTTGGGTGATGTGGAGATATCCAAGGAATCTTCGCTATATGATCTAAAGCTGCACATAAGTCTTATGTCACAGCTATCAGATCACGTGATCCCAACACCGTCATTTGTCAGACTTCAGGAAATCGTAGACAATCACGCAACACGAGTTCTTAGAGGAGAAAATCGAACTTTGAGGCAGCTAAAACTGACTTCATCTACGCAGCTGTCTGTGTGTGTTCTTCAAAATGAAGAGGATTTAAGTGCTTCTGCGGTGCTGTTAAGGTTAAAGAAAAGAGTACCAGGAGAGAGGAATTACTATGGCGAACAAGAGGTGATATTTGAGCCTTCAGGTGGCGCTTCTCCCGAGTCCTTACGTTACTTTTTGGGCAGAGTTTGGGATATTCCTCTTGAAAGACTTAACGTGGCCAAATATCTAAGAGGCAAATATGAATGGTTGGTTATTAAAGACACTGGTGTTACTCAGCGACAGAACAAGAAAAAGGGCGGAAAAAAGAAAATCAATCTGCGACAGTCTCCTTTTAATCTTCAAGATGGGGATGTTATTGGTGTCAAGGATTGTCAATCCGATTCAGAAGACAGAGATGATTTCAGTACACTAGCAGATGATGAAGGAAAAGAAAAACTTAAAAGGGAAGAGGAGGAGAAAAAGAGGAGGAGAAAAGATAAGGGAGCAAGGCGACCCGAGGTTCCGCTCTGCATTCGTGTGGATGACTTTAGATAG

Transcript

rna-Spis7722_mrna

gcggccggAAAGTAATGATTTCAGCTGATTGCACGAATCCGCGTAAAGGCTGCTTGCGATGGTGCAATCTGCAGTGGAATCAACGTTGTCTGTAAATGAGATTTATGTATAACAAGCTGATGGTGACAAGCTGGCTAAGATATGTTCGGATCTCTTTTTGAAACCGATGGAGATAAGTTGGAAAACAAGAACTCGGCTGCTACCGTCAGAGTTTCCAAACAGAACAAGTCGAACTGGCCACCTGAACCAAGAGGGCTGACTGGAATCTGTGGTCTGCAGAATCAAGGAGCCACTTGTTATTTGAATTCTCTACTGCAGACGTTATTTTTCACTCCAGAATTTAGAGATGGTTTGTTGCAGCTTACATTGGAAGATCTGAGTTGTGATTTGAAAGATGGAACATATGCTAAGGTCAGAGTGATACCACTTCAACTTCAGAAATTGTTTGCAAAGCTTCTGCTGCTTGATCAAGATAGCATTAACACTTCTGAATTGACAGATAGTTTTGGTTGGACAGGAAATGAGGGATTTCAACAGCaagatgttcaagaattgaacaGAATCTTGTTTGGCGCTTTAGAATCATCTCTTCTTGGCACCCCAGGAGAAGCTTTGATCAAGAATCTGTATCATGGAACCTCTGTAACAAAGGTAACTTGTCAAGAATGTTGGAAAATCAGTGAAAGAGAAgaGGATTACCTTGACCTTCCATTAATTCTCTCTGGGTGCAAAGACTTGGAAGAGAGTCTTTCTATGAGTTATGTTGCCATGGAGATTTTGGAGGGAAGAAATCAGTATAAGTGTGGATCATGTAACAAGCTTGTCAATGCTATAAAGGGGTGTAACATAAGTACAGTGCCTCCCATCCTGACGTTTTCATTGCTGAGGTTTGATTATGATTTTCGAAGAGGTGAACGGTTTAAGGACTGTAAAAGATACTCCTTTCCATTCACATTGAACATGAAAGAATTTTGTGAATCAAGTGATGCTGTTGGAGCAGATCAAGAATATGAGCTGTTTTCTGTTGTCATTCATGGagGTAGTTGTTATGGAGGACACTACCACGTGTATATTCGTGATGTTGAAGGATTGCGAACCTGGCATCCACCTGTAAAGGAGCAAATGAAAGTTGTCAGAGAAAATGATGGTGGTGAGAAAGATTTCATGAACTGTGGTAACCCTGTGGACTTGATTATCAGTCTACTGAAGAAGCTTGGTGGTGCCGCATCTGTCAATCAGTTATTTCAGTGTATGTCAAAGGAAACAGGGATTTCTTGGAATAAGTGTTTTAAAAGTCAGTATGGACCTCTAACAAAGTTCTTCAAGAAGCACTCTGATGTGTTCAGGTTCAGTGATGCAGCAGGTTATGTTTCACTACAAAATGGTAACAATGGAAATTCCAGCAGCCCATCAACAGCACTGGTCCAACAACAAGCTGAACACAGGAAACTTGAAGATGATGTTCCTAAAAGAAACTGCCAAGCTGTAGTGGTCGATGGAAGTTTGTCTGAGCATGGACATCACTGGTTTGACATAAATGATTCAAGGATATCTTGTATTCATGAGAAAGACCTCCAACGTCAGTTTGCTGGAAAGGAAAGTGCCTATATGCTGTTTTACAGAAGGAAAAACCTTCCTGCCTGTGTGGAAGATCCAGTTCTCTTGGTCCCTGCTCCCATTAGAGCTGAGATTGACAAACTAAATGAAGATTTAGTAAAGCAGAGAAAAGAATATGACCGTCATCTAAATGAAATTTCTGTTGGTGTGCATTTTGGAGACAACTATTCAGTGACAGACAGTGTCCTGCATCTTAAACAGGGAGTATCTGGTGAACCACTGATTATGTTACTGGATAGGAGAAAGCCTGTAAATGATCTCTTACAAACTGTTCTTAAGCTTGACCCACCTGGAAATAATTCAGAATGTAACACTCTTCACATTGCTCGACCATTACCATCAGGTCTCCATCTCTTTGAAGAACTAACAGAATATCCAGAAAAGTCTCTTATACAAAGTGGAGTGAGTGGAGGTACAGATGTATTTCTATGGAATGGAAAAGAGGTTGATGGATACTCAGTGTATCCAGGAGAAGACTCGACACCAGTGCTGCTCAACATACTATATTCAACGTTTCAGCTGCAAGATGCAGTTGAAATTCAGAAGCATCATTTTAGAAAGAACACAACAGTGGGAGAAATGAAGATTAAGTTGTGCGATTCTGTTGGTACAAATCATCAAGATTTGCGTCTAAGCTGGGTGAAGTCAAAAGGTAAAACCAAGCAAATAATCCCTTTAGATTCTGATCAGGATAGTAATACGCTGAACGAAATCGGTCTACAAGATGGCGACCAATTGGTGGTTAGAAAACATGATGGAGCGCAATCCAGTGAACAGAGTATGCCTCCATTAGCTTCTGAAGGAAAGGAGAAAGCTACCAGTCTGCTGTCCTTTGTGGTTGAGAATAGGTGTTTGaTGCGAGAGTCTAAAGAACTGGTCGACAATGACAGTAGTAAAGGTTGGCCAGTTTTGTCCGTTAAGGTTCATAAAGGGCAGacTGTTGGTGATCTCAAAGCCAAAGTTCTGGAACGTACAGACTGTAATGGTGTCTCAGAAAACGCATGTCGTCTACGGTCAGATGGCGATTATCAAGGTCTTAGTGCTCCATTGTATGAACATGAAACTTTGGAGAAGTCTTCGCTCAATGAAGGTCAGCGGCTTGTATTGGAGCATGCGCCCCCTCTTCTTCAAGGGGAAATCATGATCCGTTACTTCATATGTTCCTCCACACATACCAGCAGGAAAGAAGAGGAACAAACTGTTCTTAAAACGTGCACCATTCGTAAGtgTCTACAACTTTTGATGGAAAATTCTAACCTACAAGGAGCGACCTGGCATTTAAGGAAAACTGACTGGATCGGTGAACCAACTGACGTGTTAGACAACGAGGACGAGACGCTGgagaatgaaaatattaaaaatggCGACACTCTCATTGTTGAAGAGGGAAGGATTCCCCCAAAGGGGTTCATTCGTCTTAAGTTATGGCAAAAAATCAGTGGTAAGGCAAAAGGCCAACATCTTGGAGGGGTTTTAAACTGGATTACATCTGGTGTACAAGGTCTCTTTGGTTCGTCCGCAGAGGAGAAATTAGGTTATGATGGCAACGCAGAGGGTAGCGATTCATTGGAACCTTTGGGTGATGTGGAGATATCCAAGGAATCTTCGCTATATGATCTAAAGCTGCACATAAGTCTTATGTCACAGCTATCAGATCACGTGATCCCAACACCGTCATTTGTCAGACTTCAGGAAATCGTAGACAATCACGCAACACGAGTTCTTAGAGGAGAAAATCGAACTTTGAGGCAGCTAAAACTGACTTCATCTACGCAGCTGTCTGTGTGTGTTCTTCAAAATGAAGAGGATTTAAGtgcTTCTGCGGTGCTGTTAAGGTTAAAGAAAAGAGTACCAGGAGAGAGGAATTACTATGGCGAACAAGAGGTGATATTTGAGCCTTCAGGTGGCGCTTCTCCCGAGTCCTTACGTTACTTTTTGGGCAGAGTTTGGGATATTCCTCTTGAAAGACTTAACGTGGCCAAATATCTAAGAGGCAAATATGAATGGTTGGTTATTAAAGACACTGGTGTTACTCAGCGACAGAACAAGAAAAAGggcggaaaaaagaaaatcaatctGCGACAGTCTCCTTTTAATCTTCAAGATGGGGATGTTATTGGTGTCAAGGATTGTCAATCCGATTCAGAAGACAGAGATGATTTCAGTACACTAGCAGAtgatgaaggaaaagaaaaacttaaaaggGAAGAGGAGGAGAAAAAGAGGAGGAGAAAAGATAAGGGAGCAAGGCGACCCGAGGTTCCGCTCTGCATTCGTGTGGATGACTTTAGATAGCATATCGACCGTACCTGTTAAACCGTTAAATTTCGAGCAGTGAAACTTTTATAAGGGTCGACCGAAGTAATCTGgggttgcttttgtttttttttacttcgctACATGGTTGGTCCAGAAACTCGTGTTACTTTCTCAACCACTCAGATACAAGACTAAAATCAATTGCGACTTGGTCACCTCCCTTTTCCCGCGCCATCACCAGTTTGTTTTTATGTCGAAAATTGAACGTTGAACTTTGACAAACGGGACAACGTTTTAAGGATTCAACAGGAGGGTCTCAATTTTTTTGGCAGTAATTTTCGCTCCAGTAGAGATTTTTGTAATGCGTAATTTAATTGCTGGCAAATGTGAGGCTATATTAACTTCTCTTTCAAACaccaaggtaaaaaaaaaaaaaacattttattttaattaaataaataccATATCAATTTTTCGCTGAATATACGGACTTGTAACAATAGCTAGGCTTTACTATGATCAGGATGTATATTGTAGTACAACACTGTCTATCAGAATTTTAATTAGGCTCATTAGTTTTTTATTCGAATTATTTCTCAAGGTGACATTCTATGATTTTGTCATATTCAAGATTAGAAATTTCCTCGTCACTATATTCAAGAAGACTTGTCAAAATTTCATTAGTATGTTGTCCTAACAGAGGAGGTGCTCTAGGGACCCCCTGACAGGTTTTTCCGTTGTACTCCACGGCGGGTCctaaaagaaagattaaaagagaaacacACGTGAAAATTCATGGGAAAATCTCAATAATTACTCGTCCAGAATATCGGATAAATCTATTATGCCGTTTTACCAACGAACACTCAAAATTAACTTGTTACTTGAGTGGTCAGCTAGTTGTTTTTaa

Protein

Gene family

Family type	Membership / link
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF14560 all species →	Ubiquitin_2	Ubiquitin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR050164 all species →	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24006 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11869	USP40; ubiquitin carboxyl-terminal hydrolase 40	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.