Gene detail

Detailed information of PFX27678.1 in Stylophora pistillata

Genomic Location: Spis.scaffold98:36167...39872
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis7602_mrna

GTGAACTCAAAGTTAACATTTGTTTAGAAGGAAATCAGAGCCCTTTAGCTGTTTCTCCGTTTCTTTAGCTCTGTTGAAGcgaaaggaaataaaaaccaaaaatgcCTGCAAGGAAACGTCAGACAAGCAAAAGGAAGGCAGAAGAGCCCGCAAAGGATGCAGTTAACAAGAAGAAAGACAAGCGAGAAGCTGCAAGTGTTGACCAGAGGGAAGTTGGGCATGTCTTGACACTCGGGCAGGGTGATGTGGGGCAGTTAGGTCTGGGTGAAGATACCttggaaagaaagaaaccagCCATAGTGAAAGGACTTGATGATCTGGAAATTGTTCAAGTGGAATGTGGAGGAATGCATACTGTAGCTCTCACTGACAgtggaaagGTTTACACTTGGGGTTGTAATGATGAGGGAGCTTTAGGCCGTGTTACTTCAAGTGAGAATGGTGAAGAGTTTACTGCTGGTCCAGTGCAAGATATAGAGAGTGTAAATGTTGTCATGGTGTCAGCAGGGGATAGTCATACAATGGCCTTATCTGACCAAGGAACAGTGTATGGCTGGGGGACATACAGGGATGCAAGTGGACAAGTTGGTCTACAGGCAGATGGTGTCAAACACAAGCCCACTGTTATCCTAACACTTCAGAACAACCCCATTATTAAAATAGCATCTGGGAATGACCACACAGTAGCATTGACAAAGGATGGAAATATCTTTACCTGGGGCTGTGCAGAACAAGGCCAGTTGGGAAGAATAATGGGATGCTTTACTAGTCGTGGGGGGCGTAGGGGTTTGCAGTACATCTTAAACCCAAAACAAGTTCGCGACAAGAAAAGACTGACATTTAAAGACATTTTCTGTGGCAGCTACTCCACATTTGCTGTTTCTCAATATGGTGCAGTGTATGCATGGGGACTAAACAACTATGGGCAGCTGGGAACTGGAGATCTTGAAACTCTTTATGCTCCAACAAAGGTGGAAGCACTTACATCCTTAATCTCAGACAATAACAAGTGTGTCAGTATAGCCAGTGGTCAGCACCACACAATTGTTCTAGACTCAAGTGGCAAAGTGTATGCAATGGGAAGAGCAGAATACGGAAGACTTGGTTTAGGTGAAGATGCTAAGGAAACTACCTCTCCAGTTTTAGTTGCAGCATTAGAATGGAACCCCATTTGCAAGATTGCTTGTGGTGAAGCTGTTAGCTTGGCTGTCTCAAGTAAGGGGGATTTGTACTCGTGGGGTTTTGGAAGTTGCCTTCAGCTGGGTACAGGAGAGGATGAGGATGAATTTTCACCAGTGAAAGTGGAAGGGAAGAACTTGCAGTCTGAACTTCATGAGGTGTTGGGGGTTTCTGCTGGAGGACAGCATACAGCTTTACTAGTGAAAGACAGGAAATAATGAACTAACCATACTTCTCTGTGTAAAACATTAATTTGTATGGCAAAAGAATAAATAGCTTTCCATTCTGAGGAATGTGTCACTGAAGTGGCACAAAAAATCTACTGGTAATCGtcataattttctttgaaaacatctttttattttttttttttaaaaacaaatgatgtaAATTATTACACTTTAGACAGTGGTGACTGTCATATGTTTTGCTAAGAGTTAATAATGTTCATTATTGAACAAGCttattttgtcatttctttaattCACCCATCACAGCAAGGTAAACTTGGTTTGGATGAGAAAATActcttatttttaattgtaccgaaaaaaagaaagtcagAATATCTGCTAGACAGTCATTCAATCTGTAAcaaacagatgacatcaaaCAAGGCTCATGAATGAACCCTTAtgtattcatattttcaaataaattttgaatcAGAAGGActttaatattgtttttcactttgtaaaagagcatttgtttattttatttttctatattttcatttcttttttaagcttCTTCATTACATGTGGACTGCCAgtcaaaattttctctttgagaTGTGACTTTTAGCATTCTGGGACATATTGcagtaactttatttatccaGACATTGATTTAAGAATCAGTTTGATCACAAGTCACAAAGTAATCAGCACAAAATGTTCTGATAGCTGATGGGCTTCCACCTCTTAGTGGCTTCTAATCACAACCCTGTGCGAGAGTGACCGGGTTtagaaaaacacatttttgaATCACTTCACAGAGCTAGCATTCCTCTGCAAAGTAAATCAGCTAAGCTTGTTTTGCAAACTACTGCTGTTACTGCAAAGGGTTTCCTTCCCAGTGGTAAAATAAGAGGCATTGTGCAACATCAGCCAGCAACAGGTCTGTCGTGGGTCTAGCACTTATTAATAGTTCCCGACTTTCAGCAAGCTTCTTCCTGTCTTGGCTCAAATCTTCCCAGGGGGTGAAAAATGTGTGTCTTGCCAGTGTTGATA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00415 all species →	RCC1	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000408 all species →	Repeat	Regulator of chromosome condensation, RCC1	Interproscan
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR051553 all species →	Family	Ran GTPase-activating	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45982 all species →	REGULATOR OF CHROMOSOME CONDENSATION	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11493	RCC1; regulator of chromosome condensation	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.