Gene detail

Detailed information of PFX27902.1 in Stylophora pistillata

Genomic Location: Spis.scaffold93:741920...749370
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00075 all species →	RNase_H	RNase H	Domain	Interproscan
PF01693 all species →	Cauli_VI	Caulimovirus viroplasmin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002156 all species →	Domain	Ribonuclease H domain	Interproscan
IPR017067 all species →	Family	Ribonuclease H1, eukaryote	Interproscan
IPR050092 all species →	Family	Ribonuclease H	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR009027 all species →	Homologous_superfamily	Large ribosomal subunit protein bL9/RNase H1, N-terminal	Interproscan
IPR037056 all species →	Homologous_superfamily	Ribonuclease H1, N-terminal domain superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR011320 all species →	Domain	Ribonuclease H1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10642 all species →	RIBONUCLEASE H1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004523 all species →	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0043137 all species →	Biological Process	DNA replication, removal of RNA primer	Interproscan
GO:0090502 all species →	Biological Process	obsolete RNA phosphodiester bond hydrolysis, endonucleolytic	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03469	rnhA, RNASEH1; ribonuclease HI	EC:3.1.26.4	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.